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grahamc's tools [40 articles]

当前文献位于 grahamc's 文献库 标签分类为 tools. You can also see everyone's tools.
  • Mapping proteins to disease terminologies: from UniProt to MeSH.
    BMC bioinformatics, Vol. 9 Suppl 5 (2008)
    by A Mottaz, YL Yip, P Ruch, AL Veuthey
    posted to tools mesh_terms disease annotation by grahamc on 2008-05-28 02:14:25 as ** along with 2 people maralena jyuh
  • Cytoscape ESP: simple search of complex biological networks.
    Bioinformatics (Oxford, England) (28 April 2008)
    by Maital Ashkenazi, Gary D D Bader, Allan Kuchinsky, Menachem Moshelion, David J J States
    posted to tools cytoscape by grahamc on 2008-05-28 01:58:26 as ** along with 4 people renatomilani jyuh kengg maralena
  • UniProtJAPI: A remote API for accessing UniProt data.
    Bioinformatics (Oxford, England) (4 April 2008)
    by Samuel Patient, Daniela Wieser, Michael Kleen, Ernst Kretschmann, Maria Jesus J Martin, Rolf Apweiler
    posted to uniprot tools java api by grahamc on 2008-05-28 01:54:53 as ** along with 3 people wisdom_love jyuh dullhunk
  • Analyzing Protein Interaction Networks Using Structural Information
    Annual Review of Biochemistry, Vol. 77, No. 1. (2008)
    by Christina Kiel, Pedro Beltrao, Luis Serrano
    posted to tools review network_biology bioinformatics by grahamc on 2008-05-01 07:24:30 as ** along with 5 people zwang phoenixzxl paolomarcatili neils Evangelia
  • Flexible web-based integration of distributed large-scale human protein interaction maps
    Journal of Integrative Bioinformatics, Vol. 4, No. 1. (2007), pp. 51-61.
    by Gautam Chaurasia, Yasir Iqbal, Christian Hänig, Hanspeter Herzel, Erich E Wanker, Matthias E Futschik
    posted to tools protein-protein interactions human data_integration database bioinformatics by grahamc on 2008-04-23 17:13:15 as read
  • UniHI: an entry gate to the human protein interactome.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by G Chaurasia, Y Iqbal, C Hänig, H Herzel, EE Wanker, ME Futschik
    posted to tools protein-protein interactions human data_integration biological_networks bioinformatics by grahamc on 2008-04-23 17:04:53 as read along with 3 people jyuh jfr massivemayhem
  • An efficient strategy for extensive integration of diverse biological data for protein function prediction.
    Bioinformatics (28 November 2007)
    by Hon Nian N Chua, Wing-Kin K Sung, Limsoon Wong
    posted to data_integration methods scoring tools by grahamc on 2008-01-04 03:56:42 as ** along with 3 people carlk tmmurali bootsy
  • A Profile-Based Deterministic Sequential Monte Carlo Algorithm for Motif Discovery.
    Bioinformatics (17 November 2007)
    by Kuo-Ching C Liang, Xiaodong Wang, Dimitris Anastassiou
    posted to methods motifs tools by grahamc on 2008-01-04 03:45:31 as ** along with 5 people and 1 group isimpson cjeans nklee maximilianh idonaldson Motif Discovery
  • Subcellular location prediction of proteins using support vector machines with alignment of block sequences utilizing amino acid composition
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Takeyuki Tamura, Tatsuya Akutsu
    posted to algorithm algorithms co-localization prediction tools by grahamc on 2007-12-15 02:39:19 as ** along with 2 people mdstobbe neils
  • Computing topological parameters of biological networks.
    Bioinformatics (15 November 2007)
    by Yassen Assenov, Fidel Ramírez, Sven-Eric E Schelhorn, Thomas Lengauer, Mario Albrecht
    posted to cytoscape network_statistics network_topology tools by grahamc on 2007-12-14 04:18:26 as ** along with 5 people frohike jyuh jfr kengg mclarenv
  • MANTIS, a phylogenetic framework for multi-species genome comparisons.
    Bioinformatics (19 November 2007)
    by Raphaël Helaers, Athanasia C C Tzika, Yves Van de Peer, Michel C C Milinkovitch
    posted to comparative_genomics methods tools by grahamc on 2007-12-14 04:15:51 as **
  • BiNoM: a Cytoscape plugin for manipulating and analyzing biological networks
    Bioinformatics (16 November 2007), btm553.
    by Andrei Zinovyev, Eric Viara, Laurence Calzone, Emmanuel Barillot
    posted to cytoscape network_properties network_statistics network_topology tools by grahamc on 2007-12-14 04:12:56 as ** along with 5 people jyuh jfr dullhunk sgoetz idonaldson
  • Improved Detection of Overrepresentation of Gene-Ontology Annotations with Parent-Child Analysis.
    Bioinformatics (11 September 2007)
    by Steffen Grossmann, Sebastian Bauer, Peter N N Robinson, Martin Vingron
    posted to gene_ontology methods statistics tools by grahamc on 2007-12-14 04:07:19 as ** along with 5 people marck sgoetz RamuAnandakrishnan tmmurali heliopais
  • Mapping PDB chains to UniProtKB entries.
    Bioinformatics, Vol. 21, No. 23. (1 December 2005), pp. 4297-4301.
    by AC Martin
    posted to gene_identifiers tools by grahamc on 2007-10-10 20:57:07 as ** along with 2 people bicko lpfernandes
  • A data integration methodology for systems biology.
    Proc Natl Acad Sci U S A (21 November 2005)
    by Daehee Hwang, Alistair G G Rust, Stephen Ramsey, Jennifer J J Smith, Deena M M Leslie, Andrea D D Weston, Pedro de Atauri, John D D Aitchison, Leroy Hood, Andrew F F Siegel, Hamid Bolouri
    posted to clustering methods statistics tools by grahamc on 2007-10-10 20:05:45 as ** along with 17 people and 3 groups brian tmmurali dragonrez okarsligil jfr lfriedl Schmidtc eweaver wnpx biosv Sharpshoot noano mbeautru reidy GeeSharpMinor nedwards athleem kdl Bioinformatics JJJ
  • MaxAlign: maximizing usable data in an alignment
    BMC Bioinformatics, Vol. 8 (28 August 2007), 312.
    by Rodrigo Gouveia-Oliveira, Peter W Sackett, Anders G Pedersen
    posted to alignment comparative_genomics tools by grahamc on 2007-09-05 02:50:13 as ** along with 1 group ParkinsonLab_at_MaRS
  • Tools for Visually Exploring Biological Networks.
    Bioinformatics (25 August 2007)
    by Matthew Suderman, Michael Hallett
    posted to network_alignment protein-protein tools visualization by grahamc on 2007-09-05 02:38:19 as ** along with 12 people and 3 groups hryk AlexanderPico schuylrp jyuh icases dullhunk sebastien_vigneau sgoetz cabbagezs cerami loopback007 Pao-Yang ParkinsonLab_at_MaRS TNT Cancer_Stem_Cells
  • MeTaDoR: A comprehensive resource for membrane targeting domains and their host proteins.
    Bioinformatics (25 August 2007)
    by Nitin Bhardwaj, Robert V V Stahelin, Guijun Zhao, Wonhwa Cho, Hui Lu
    posted to methods tools transmembrane_prediction by grahamc on 2007-09-05 02:36:22 as ** along with 1 group ParkinsonLab_at_MaRS
  • A review of feature selection techniques in bioinformatics.
    Bioinformatics (24 August 2007)
    by Yvan Saeys, Iñaki Inza, Pedro Larrañaga
    posted to review tools by grahamc on 2007-09-05 02:32:52 as ** along with 12 people and 2 groups srp33 jyuh chad_davis aviad_work frohike shigepong lp2 cabbagezs ryanraaum vietanh0 eacosta aaalxy Bioinformatics ParkinsonLab_at_MaRS
  • An exploration of alternative visualisations of the basic helix-loop-helix protein interaction network
    BMC Bioinformatics, Vol. 8 (06 August 2007), 289.
    by Brian J Holden, John W Pinney, Simon C Lovell, Grigoris D Amoutzias, David L Robertson
    posted to interactions protein-protein tools visualization by grahamc on 2007-08-13 17:00:49 as ** along with 2 people and 2 groups zwang Tatelie ParkinsonLab_at_MaRS workshop
  • CLUSS: Clustering of protein sequences based on a new similarity measure
    BMC Bioinformatics, Vol. 8 (04 August 2007), 286.
    by Abdellali Kelil, Shengrui Wang, Ryszard Brzezinski, Alain Fleury
    posted to clustering_methods tools by grahamc on 2007-08-13 16:55:55 as ** along with 3 people and 1 group bobychan nklee ninch ParkinsonLab_at_MaRS
  • BLISS 2.0: a web-based tool for predicting conserved regulatory modules in distantly-related orthologous sequences.
    Bioinformatics (27 July 2007)
    by Hailong Meng, Arunava Banerjee, Lei Zhou
    posted to comparative_genomics tools by grahamc on 2007-08-13 16:47:29 as ** along with 2 people and 1 group GustavoLacerda maximilianh ParkinsonLab_at_MaRS
  • Protein-Protein Interaction Hotspots Carved into Sequences.
    PLoS Comput Biol, Vol. 3, No. 7. (13 July 2007)
    by Yanay Ofran, Burkhard Rost
    posted to domains interactions methods protein-protein tools by grahamc on 2007-07-25 20:44:10 as ** along with 7 people and 3 groups higueruelo bicko dchughes cjeans zwang Jporci Pao-Yang G4ID ParkinsonLab_at_MaRS Genetics-of-Gambling
  • APID2NET: unified interactome graphic analyzer.
    Bioinformatics (21 July 2007)
    by Juan Hernandez H Toro, Carlos Prieto, Javier De Las D Rivas
    posted to cytoscape tools by grahamc on 2007-07-25 18:04:58 as ** along with 1 person and 1 group jyuh ParkinsonLab_at_MaRS
  • High-throughput identification of Interacting Protein-Protein Binding Sites
    BMC Bioinformatics, Vol. 8 (27 June 2007), 223.
    by Jo-Lan Chung, Wei Wang, Philip E Bourne
    posted to domains interactions methods protein-protein tools by grahamc on 2007-07-09 23:18:48 as ** along with 3 people and 1 group bicko zwang Evangelia ParkinsonLab_at_MaRS
  • A statistical approach using network structure in the prediction of protein characteristics
    Bioinformatics (28 June 2007), btm342.
    by Pao-Yang Chen, Charlotte M Deane, Gesine Reinert
    posted to interactions protein-protein tools by grahamc on 2007-07-09 22:57:16 as *** along with 5 people and 1 group iris_2001 zwang cabbagezs cdeane Pao-Yang ParkinsonLab_at_MaRS
  • QPRIMER: A Quick Web-based Application for Designing Conserved PCR Primers from Multigenome Alignments.
    Bioinformatics (28 June 2007)
    by Namshin Kim, Christopher Lee
    posted to methods tools by grahamc on 2007-07-09 22:54:00 as ** along with 4 people and 1 group jyuh sebastien_vigneau ryanraaum asddd ParkinsonLab_at_MaRS
  • A domain-based approach to predict protein-protein interactions
    BMC Bioinformatics, Vol. 8 (13 June 2007), 199.
    by Mudita Singhal, Haluk Resat
    posted to domains interactions methods protein-protein tools by grahamc on 2007-06-18 17:03:27 as ** along with 3 people and 2 groups carlk yas phoenixzxl T_lab ParkinsonLab_at_MaRS
  • The MiSink Plugin: Cytoscape as a graphical interface to the Database of Interacting Proteins.
    Bioinformatics (6 June 2007)
    by Lukasz Salwinski, David Eisenberg
    posted to tools by grahamc on 2007-06-18 16:21:14 as ** along with 2 people and 1 group chasmand jyuh ParkinsonLab_at_MaRS
  • SQUINT: A Multiple Alignment Program and Editor.
    Bioinformatics (7 May 2007)
    by Matthew G G Goode, Allen G G Rodrigo
    posted to alignment tools by grahamc on 2007-06-06 20:08:01 as ** along with 1 person and 1 group Bevan_Weir ParkinsonLab_at_MaRS
  • Tree Gibbs Sampler: Identifying Conserved Motifs without Aligning Orthologous Sequences.
    Bioinformatics (31 May 2007)
    by Xiaohui Cai, Haiyan Hu, Xiaoman Shawn S Li
    posted to methods motifs tools by grahamc on 2007-06-05 17:13:14 as ** along with 2 people and 1 group cjeans GustavoLacerda ParkinsonLab_at_MaRS
  • Glycan classification with tree kernels.
    Bioinformatics (7 March 2007)
    by Yoshihiro Yamanishi, Francis Bach, Jean-Philippe P Vert
    posted to algorithm ecm tools by grahamc on 2007-03-14 20:48:25 as ** along with 1 person and 1 group shigepong ParkinsonLab_at_MaRS
  • Quantifying similarity between motifs
    Genome Biology, Vol. 8 (26 February 2007), R24.
    by Shobhit Gupta, John A Stamatoyannopoulos, Timothy L Bailey, William S Noble
    posted to motifs statistics tools by grahamc on 2007-03-09 21:26:16 as ** along with 3 people and 2 groups cwbrown nklee gracio EisenLab ParkinsonLab_at_MaRS
  • PLAN: A web platform for automating high-throughput BLAST searches and for managing and mining results
    BMC Bioinformatics, Vol. 8 (09 February 2007), 53.
    by Ji He, Xinbin Dai, Xuechun Zhao
    posted to tools by grahamc on 2007-03-09 20:55:13 as ** along with 1 person and 1 group jyuh ParkinsonLab_at_MaRS
  • GAPWM: A Genetic Algorithm Method for Optimizing a Position Weight Matrix.
    Bioinformatics (6 March 2007)
    by Leping Li, Yu Liang, Robert L L Bass
    posted to algorithm domain motifs tools by grahamc on 2007-03-09 20:46:47 as ** along with 3 people and 2 groups dpollard cjeans ghattem EisenLab ParkinsonLab_at_MaRS
  • Revealing posttranscriptional regulatory elements through network-level conservation.
    PLoS Comput Biol, Vol. 1, No. 7. (December 2005)
    by CS Chan, O Elemento, S Tavazoie
    posted to algorithm domain motifs tools by grahamc on 2007-02-22 20:54:27 as ** along with 3 people and 1 group balicea koller Garamonfok ParkinsonLab_at_MaRS
  • Fast and systematic genome-wide discovery of conserved regulatory elements using a non-alignment based approach.
    Genome Biol, Vol. 6, No. 2. (2005)
    by O Elemento, S Tavazoie
    posted to algorithm domain tools by grahamc on 2007-02-22 20:50:20 as ** along with 2 people and 2 groups nklee indigoviolet EisenLab ParkinsonLab_at_MaRS
  • Computing exact p-values for DNA motifs (Part I).
    Bioinformatics (19 January 2007)
    by Jing Zhang, Bo Jiang, Ming Li, John Tromp, Xuegong Zhang, Michael Q Q Zhang
    posted to tools pattern_recognition motifs by grahamc on 2007-02-04 20:33:38 as ** along with 1 person and 2 groups allPowerde The_Festival_of_Doubt ParkinsonLab_at_MaRS
  • Sungear: interactive visualization and functional analysis of genomic datasets.
    Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. 259-261.
    by CS Poultney, RA Gutiérrez, MS Katari, ML Gifford, WB Paley, GM Coruzzi, DE Shasha
    posted to visualization tools software by grahamc on 2007-02-04 20:16:23 as ** along with 1 person and 1 group jyuh ParkinsonLab_at_MaRS
  • IDconverter and IDClight: Conversion and annotation of gene and protein IDs
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Andreu Alibes, Patricio Yankilevich, Andres Canada, Ramon D Uriarte
    posted to tools gene_identifiers by grahamc on 2007-01-20 20:51:56 as ** along with 6 people and 1 group mdstobbe srp33 cerami jyuh aalibes jfr ParkinsonLab_at_MaRS
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