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grahamc's network_biology [25 articles]

当前文献位于 grahamc's 文献库 标签分类为 network_biology. You can also see everyone's network_biology.
  • Analyzing Protein Interaction Networks Using Structural Information
    Annual Review of Biochemistry, Vol. 77, No. 1. (2008)
    by Christina Kiel, Pedro Beltrao, Luis Serrano
    posted to tools review network_biology bioinformatics by grahamc on 2008-05-01 07:24:30 as ** along with 3 people paolomarcatili neils Evangelia
  • Towards a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae.
    Mol Cell Proteomics (2 January 2007)
    by Sean R R Collins, Patrick Kemmeren, Xue-Chu C Zhao, Jack F F Greenblatt, Forrest Spencer, Frank C C Holstege, Jonathan S S Weissman, Nevan J J Krogan
    posted to interactions model_organisms network_biology protein-protein yeast by grahamc on 2008-03-28 21:34:06 as ** along with 4 people and 1 group paolomarcatili csanford nickluscombe roys EBI-regulation
  • Insights into Protein-Protein Interfaces using a Bayesian Network Prediction Method
    Journal of Molecular Biology, Vol. In Press, Corrected Proof
    by James R Bradford, Chris J Needham, Andrew J Bulpitt, David R Westhead
    posted to methods network_biology prediction by grahamc on 2008-03-28 20:46:28 as ** along with 7 people and 2 groups paolomarcatili marti barry conkymacro ameetsoni massivemayhem phoenixzxl structural_bioinformatics Bioinformatics
  • Computational analysis of human protein interaction networks.
    Proteomics, Vol. 7, No. 15. (August 2007), pp. 2541-2552.
    by F Ramírez, A Schlicker, Y Assenov, T Lengauer, M Albrecht
    posted to data_integration human interactions network_biology protein-protein by grahamc on 2008-03-28 20:45:02 as ** along with 4 people carlk paolomarcatili jyuh balicea
  • Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae
    Journal of Biology, Vol. 5, No. 4. (08 June 2006), 11.
    by Teresa Reguly, Ashton Breitkreutz, Lorrie Boucher, Bobby-Joe Breitkreutz, Gary C Hon, Chad L Myers, Ainslie Parsons, Helena Friesen, Rose Oughtred, Amy Tong, Chris Stark, Yuen Ho, David Botstein, Brenda Andrews, Charles Boone, Olga G Troyanskya, Trey Ideker, Kara Dolinski, Nizar N Batada, Mike Tyers
    posted to interactions model_organisms network_biology protein-protein yeast by grahamc on 2008-03-28 20:43:03 as ** along with 17 people and 3 groups chasmand snuppepuppan tmmurali lfriedl balajis wnpx nickluscombe egralla citecat noano koller iris_2001 sgoetz shikin s041629 pmendes mtruksa kdl EBI-regulation GeneGo
  • Discovery of biological networks from diverse functional genomic data.
    Genome Biol, Vol. 6, No. 13. (2005)
    by CL Myers, D Robson, A Wible, MA Hibbs, C Chiriac, CL Theesfeld, K Dolinski, OG Troyanskaya
    posted to function_prediction genomics network_biology by grahamc on 2008-03-28 20:41:42 as ** along with 1 person carlk
  • Finding function: evaluation methods for functional genomic data
    BMC Genomics, Vol. 7 (25 July 2006), 187.
    by Chad L Myers, Daniel R Barrett, Matthew A Hibbs, Curtis Huttenhower, Olga G Troyanskaya
    posted to function_prediction genomics network_biology network_confidence statistics by grahamc on 2008-03-28 20:39:02 as ** along with 7 people and 2 groups cerca marck carlk tjimenez jfr smbaxtersf dejori ic4 generif_paper
  • Context-sensitive data integration and prediction of biological networks
    Bioinformatics, Vol. 23, No. 17. (1 September 2007), pp. 2322-2330.
    by Chad L Myers, Olga G Troyanskaya
    posted to data_integration network_biology by grahamc on 2008-03-28 20:37:21 as ** along with 7 people carlk jyuh tmmurali rdiaz iris_2001 nedwards shung
  • Effect of sampling on topology predictions of protein-protein interaction networks
    Nature Biotechnology, Vol. 23, No. 7. (07 July 2005), pp. 839-844.
    by Jing-Dong J Han, Denis Dupuy, Nicolas Bertin, Michael E Cusick, Marc Vidal
    posted to interactions network_biology network_topology protein-protein by grahamc on 2008-03-28 20:30:40 as ** along with 11 people carlk paolomarcatili snuppepuppan kuhn rabbat gurkanbebek koller eukfn mikaelhuss cjeans iris_2001
  • Genomic analysis of essentiality within protein networks.
    Trends Genet, Vol. 20, No. 6. (June 2004), pp. 227-231.
    by H Yu, D Greenbaum, H Xin Lu, X Zhu, M Gerstein
    posted to genomics interactions network_biology protein-protein by grahamc on 2008-03-28 20:28:34 as ** along with 3 people and 1 group shikin niolis nickluscombe EBI-regulation
  • Analyzing protein function on a genomic scale: the importance of gold-standard positives and negatives for network prediction.
    Curr Opin Microbiol, Vol. 7, No. 5. (October 2004), pp. 535-545.
    by R Jansen, M Gerstein
    posted to function_prediction genomics network_biology network_confidence standards by grahamc on 2008-03-28 20:26:40 as ** along with 5 people and 2 groups carlk okarsligil lfriedl wnpx neils kdl Bioinformatics
  • Integrating 'omic' information: a bridge between genomics and systems biology.
    Trends Genet, Vol. 19, No. 10. (October 2003), pp. 551-560.
    by H Ge, AJ Walhout, M Vidal
    posted to data_integration genomics network_biology by grahamc on 2008-03-28 20:23:38 as ** along with 5 people and 1 group sanchezbuelna lfriedl wnpx biosv reidy kdl
  • Integrating interactome, phenome, and transcriptome mapping data for the C. elegans germline.
    Curr Biol, Vol. 12, No. 22. (19 November 2002), pp. 1952-1958.
    by AJ Walhout, J Reboul, O Shtanko, N Bertin, P Vaglio, H Ge, H Lee, L Doucette-Stamm, KC Gunsalus, AJ Schetter, DG Morton, KJ Kemphues, V Reinke, SK Kim, F Piano, M Vidal
    posted to data_integration interactions network_biology by grahamc on 2008-03-28 20:21:59 as **
  • Interrelating different types of genomic data, from proteome to secretome: 'oming in on function.
    Genome Res., Vol. 11, No. 9. (September 2001), pp. 1463-1468.
    by D Greenbaum, NM Luscombe, R Jansen, J Qian, M Gerstein
    posted to data_integration interactions network_biology protein-protein by grahamc on 2008-03-28 20:18:17 as **
  • NETWORK BIOLOGY: UNDERSTANDING THE CELL'S FUNCTIONAL ORGANIZATION
    Nat Rev Genet, Vol. 5, No. 2. (February 2004), pp. 101-113.
    by Albert-Laszlo Barabasi, Zoltan N Oltvai
    posted to evolution function_prediction network_biology protein_evolution by grahamc on 2008-03-28 20:08:04 as ** along with 9 people and 1 group okarsligil bayesian tny mmt mirzazadeh lpfernandes karfunkel vietanh0 nolodie Bioinformatics
  • The Importance of Bottlenecks in Protein Networks: Correlation with Gene Essentiality and Expression Dynamics
    PLoS Computational Biology, Vol. preprint, No. 2007. (1 February 2007), e59.eor.
    by Haiyuan Yu, Philip M Kim, Emmett Sprecher, Valery Trifinov, Mark Gerstein
    posted to evolution interactions network_biology network_topology protein-protein by grahamc on 2008-03-28 20:06:47 as ** along with 3 people zwang Pao-Yang taiei688
  • Positive selection at the protein network periphery: Evaluation in terms of structural constraints and cellular context
    Proceedings of the National Academy of Sciences (12 December 2007), 0710183104.
    by Philip M Kim, Jan O Korbel, Mark B Gerstein
    posted to evolution network_biology selection by grahamc on 2008-03-28 20:05:37 as ** along with 6 people wilbur jyuh tmmurali cjeans mingzhi minostro
  • Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae.
    Nat Genet, Vol. 29, No. 4. (December 2001), pp. 482-486.
    by H Ge, Z Liu, GM Church, M Vidal
    posted to data_integration interactions model_organisms network_biology translation yeast by grahamc on 2008-03-28 19:59:46 as ** along with 10 people and 1 group paolomarcatili roys BioGeek lfriedl wnpx mmt gespim bluto ruvido kintoki kdl
  • Getting connected: analysis and principles of biological networks.
    Genes Dev, Vol. 21, No. 9. (1 May 2007), pp. 1010-1024.
    by X Zhu, M Gerstein, M Snyder
    posted to interactions net network_biology network_statistics protein-protein by grahamc on 2008-03-28 19:57:55 as ** along with 9 people renatomilani carlk jfr balajis fishtank nedwards naegele Evangelia kristen
  • Understanding Network Concepts in Modules
    BMC Systems Biology, Vol. 1, No. 1. (2007)
    by Jun Dong, Steve Horvath
    posted to network_biology network_properties network_statistics network_topology by grahamc on 2008-03-28 17:42:09 as ** along with 3 people and 1 group jfr kengg natstreet Bioinformatics
  • The human disease network
    PNAS, Vol. 104, No. 21. (22 May 2007), pp. 8685-8690.
    by Kwang-Il Goh, Michael E Cusick, David Valle, Barton Childs, Marc Vidal, Albert-Laszlo Barabasi
    posted to disease human network_biology by grahamc on 2008-03-28 17:21:27 as ** along with 23 people and 8 groups shoshin carlk mingzhi Yanno jyuh aalibes cannin kuhn jfr yas balicea neveaire bundschu raiyar joepickrell leSyl henning dejori xingxu winterschlaefer naegele shikin nolodie GomezLab Biostatistics Computational-Genomics Bioinformatics Neuroscience steinmetzlab ic4 generif_paper
  • Integrating physical and genetic maps: from genomes to interaction networks
    Nature Reviews Genetics, Vol. 8, No. 9., pp. 699-710.
    by Andreas Beyer, Sourav Bandyopadhyay, Trey Ideker
    posted to data_integration network_biology by grahamc on 2008-03-28 17:09:51 as ** along with 10 people and 3 groups carlk cdeane jyuh balicea dchughes sebastien_vigneau joepickrell zwang shikin lh1 Bioinformatics G4ID Genetics-of-Gambling
  • Graph-based methods for analysing networks in cell biology.
    Brief Bioinform, Vol. 7, No. 3. (September 2006), pp. 243-255.
    by T Aittokallio, B Schwikowski
    posted to network_biology network_properties network_statistics network_topology review by grahamc on 2008-03-28 17:07:29 as ** along with 5 people and 2 groups iris_2001 barry tmmurali aswin jmarcelino structural_bioinformatics Bioinformatics
  • The large-scale organization of metabolic networks.
    Nature, Vol. 407, No. 6804. (5 October 2000), pp. 651-654.
    by H Jeong, B Tombor, R Albert, ZN Oltvai, AL Barabási
    posted to metabolism network_biology by grahamc on 2008-03-28 16:18:29 as ** along with 21 people and 2 groups shikin camster snuppepuppan jpmague mague alexisgallagher bjorns Borelli shivaram lfriedl cmmorel alexg Shirakawa ddahlem gcalda jrbanga karfunkel Evangelia shung pmendes stefanoallesina dbk-lab kdl
  • The Edinburgh human metabolic network reconstruction and its functional analysis.
    Mol Syst Biol, Vol. 3 (2007)
    by H Ma, A Sorokin, A Mazein, A Selkov, E Selkov, O Demin, I Goryanin
    posted to human metabolism network_biology by grahamc on 2008-03-28 16:17:39 as ** along with 4 people mdstobbe fishtank cjeans shung
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