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gpalidwor's no-tag [78 articles]

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  • notes TreeSnatcher: coding trees from images.
    Bioinformatics, Vol. 23, No. 24. (15 December 2007), pp. 3384-3385.
    by T Laubach, A von Haeseler
    posted to no-tag by gpalidwor on 2007-12-17 14:08:38 as *** along with 1 person maximilianh
  • Knockdown of the bovine prion gene PRNP by RNA interference (RNAi) technology
    BMC Biotechnology, Vol. 7 (26 July 2007), 44.
    by Shizuyo Sutou, Miho Kunishi, Toshiyuki Kudo, Pimprapar Wongsrikeao, Makoto Miyagishi, Takeshige Otoi
    posted to no-tag by gpalidwor on 2007-12-14 02:40:39 as **
  • A TATA element is required for tRNA promoter activity and confers TATA-binding protein responsiveness in Drosophila Schneider-2 cells.
    J Biol Chem, Vol. 274, No. 16. (16 April 1999), pp. 11369-11375.
    by A Trivedi, LS Young, C Ouyang, DL Johnson, KU Sprague
    posted to no-tag by gpalidwor on 2007-12-14 02:37:23 as **
  • Transcription factor TFIIIB and transcription by RNA polymerase III.
    Biochem Soc Trans, Vol. 34, No. Pt 6. (December 2006), pp. 1082-1087.
    by GA Kassavetis, EP Geiduschek
    posted to no-tag by gpalidwor on 2007-12-14 02:31:57 as **
  • A composite upstream sequence motif potentiates tRNA gene transcription in yeast.
    J Mol Biol, Vol. 333, No. 1. (10 October 2003), pp. 1-20.
    by S Giuliodori, R Percudani, P Braglia, R Ferrari, E Guffanti, S Ottonello, G Dieci
    posted to no-tag by gpalidwor on 2007-12-14 02:28:33 as **
  • Analysis of transcription factors binding to the human 7SL RNA gene promoter.
    Biochem Cell Biol, Vol. 77, No. 5. (1999), pp. 431-438.
    by J Müller, BJ Benecke
    posted to no-tag by gpalidwor on 2007-12-14 02:19:36 as **
  • Genomic organization, chromosomal mapping and promoter analysis of the mouse selenocysteine tRNA gene transcription-activating factor (mStaf) gene.
    Biochem J, Vol. 346 Pt 1 (15 February 2000), pp. 45-51.
    by K Adachi, M Katsuyama, S Song, T Oka
    posted to no-tag by gpalidwor on 2007-12-14 02:18:01 as **
  • TFIIIC-independent in vitro transcription of yeast tRNA genes.
    J Mol Biol, Vol. 299, No. 3. (9 June 2000), pp. 601-613.
    by G Dieci, R Percudani, S Giuliodori, L Bottarelli, S Ottonello
    posted to no-tag by gpalidwor on 2007-12-14 02:12:29 as **
  • Modulation of differential transcription of tRNA genes through chromatin organization.
    Biochem J, Vol. 391, No. Pt 2. (15 October 2005), pp. 371-381.
    by A Parthasarthy, KP Gopinathan
    posted to no-tag by gpalidwor on 2007-12-14 02:04:24 as **
  • Transcriptional activation of a moderately expressed tRNA gene by a positioned nucleosome.
    Biochem J, Vol. 396, No. 3. (15 June 2006), pp. 439-447.
    by A Parthasarthy, KP Gopinathan
    posted to no-tag by gpalidwor on 2007-12-14 02:02:50 as **
  • Transcription of individual tRNA1Gly genes from within a multigene family is regulated by transcription factor TFIIIB.
    FEBS J, Vol. 272, No. 20. (October 2005), pp. 5191-5205.
    by A Parthasarthy, KP Gopinathan
    posted to no-tag by gpalidwor on 2007-12-14 02:00:18 as **
  • Folding of noncoding RNAs during transcription facilitated by pausing-induced nonnative structures
    Proceedings of the National Academy of Sciences, Vol. 104, No. 46. (13 November 2007), pp. 17995-18000.
    by Terrence N Wong, Tobin R Sosnick, Tao Pan
    posted to no-tag by gpalidwor on 2007-12-12 02:08:43 as ** along with 1 person RedmondSmyth
  • Codon bias uncovers splicing regulatory sequences
    posted to no-tag by gpalidwor on 2007-12-12 01:56:49 as **
  • Artificial intelligence techniques for bioinformatics.
    Appl Bioinformatics, Vol. 1, No. 4. (2002), pp. 191-222.
    by A Narayanan, EC Keedwell, B Olsson
    posted to no-tag by gpalidwor on 2007-10-05 21:55:38 as **
  • Human RNase P: a tRNA-processing enzyme and transcription factor.
    Nucleic Acids Res, Vol. 35, No. 11. (2007), pp. 3519-3524.
    by N Jarrous, R Reiner
    posted to no-tag by gpalidwor on 2007-08-22 17:05:21 as **
  • An Introduction to Support Vector Machines | BioinformaticsOnline
    posted to no-tag by gpalidwor on 2007-07-17 20:37:57 as **
  • Intronic microRNA precursors that bypass Drosha processing
    Nature (24 June 2007)
    by Graham J Ruby, Calvin H Jan, David P Bartel
    posted to no-tag by gpalidwor on 2007-07-06 18:29:49 as ** along with 5 people and 4 groups ale dpollard andersbj stajich Garamonfok Bioinformatics EisenLab microRNA Berkeley Mycology
  • A comprehensive evaluation of SAM, the SAM R-package and a simple modification to improve its performance
    BMC Bioinformatics, Vol. 8 (29 June 2007), 230.
    by Shunpu Zhang
    posted to no-tag by gpalidwor on 2007-07-05 15:06:49 as ** along with 4 people jfr shigepong ghattem GeeSharpMinor
  • Structure of pyrrolysyl-tRNA synthetase, an archaeal enzyme for genetic code innovation.
    Proc Natl Acad Sci U S A (25 June 2007)
    by Jennifer M M Kavran, Sarath Gundllapalli, Patrick O'donoghue, Markus Englert, Dieter Söll, Thomas A A Steitz
    posted to no-tag by gpalidwor on 2007-06-29 00:01:37 as **
  • Interpretation of multiple probe sets mapping to the same gene in Affymetrix GeneChips
    BMC Bioinformatics, Vol. 8 (15 January 2007), 13.
    by Maria A Stalteri, Andrew P Harrison
    posted to no-tag by gpalidwor on 2007-06-27 21:49:31 as ** along with 7 people jyuh jfr hpiwowar frohike ghattem bertelsen heliopais
  • Improved precision and accuracy for microarrays using updated probe set definitions
    BMC Bioinformatics, Vol. 8 (08 February 2007), 48.
    by Rickard Sandberg, Ola Larsson
    posted to no-tag by gpalidwor on 2007-06-27 21:49:15 as ** along with 5 people bertelsen jfr shigepong ghattem heliopais
  • Explaining differences in saturation levels for Affymetrix GeneChip(R) arrays.
    Nucleic Acids Res (12 June 2007)
    by Dmitriy Skvortsov, Diana Abdueva, Christina Curtis, Betty Schaub, Simon Tavaré
    posted to no-tag by gpalidwor on 2007-06-27 21:26:09 as ** along with 6 people bertelsen jfr sebastien_vigneau ghattem waszak ptrobajo
  • Isochore patterns and gene distributions in fish genomes.
    Genomics (20 June 2007)
    by Maria Costantini, Fabio Auletta, Giorgio Bernardi
    posted to no-tag by gpalidwor on 2007-06-27 21:22:57 as **
  • Genome multiplication as adaptation to tissue survival: evidence from gene expression in mammalian heart and liver.
    Genomics, Vol. 89, No. 1. (January 2007), pp. 70-80.
    by OV Anatskaya, AE Vinogradov
    posted to no-tag by gpalidwor on 2007-06-27 21:22:51 as **
  • Combining experiments with multi-cell agent-based modeling to study biological tissue patterning.
    Brief Bioinform (21 June 2007)
    by Bryan C C Thorne, Alexander M M Bailey, Shayn M M Peirce
    posted to no-tag by gpalidwor on 2007-06-27 21:22:26 as **
  • Tissue-specific transcriptional regulation has diverged significantly between human and mouse
    Nature Genetics, Vol. 39, No. 6. (21 May 2007), pp. 730-732.
    by Duncan T Odom, Robin D Dowell, Elizabeth S Jacobsen, William Gordon, Timothy W Danford, Kenzie D Macisaac, Alexander P Rolfe, Caitlin M Conboy, David K Gifford, Ernest Fraenkel
    posted to no-tag by gpalidwor on 2007-06-27 21:22:01 as ** along with 9 people and 4 groups dpollard dchughes cwbrown djkt cjeans maximilianh fpattyn caseybrown yevishere EisenLab G4ID Genetics-of-Gambling cis-regulatory-evolution
  • An environmental signature for 323 microbial genomes based on codon adaptation indices
    Genome Biology, Vol. 7 (07 December 2006), R114.
    by Hanni Willenbrock, Carsten Friis, Agnieszka S Juncker, David W Ussery
    posted to no-tag by gpalidwor on 2007-06-27 21:21:43 as ** along with 3 people Retchless aswin marenzelleria
  • Celsius: a community resource for Affymetrix microarray data
    Genome Biology, Vol. 8 (14 June 2007), R112.
    by Allen Day, Marc RJ Carlson, Jun Dong, Brian D O'Connor, Stanley F Nelson
    posted to no-tag by gpalidwor on 2007-06-27 21:20:45 as ** along with 2 people jfr ghattem
  • Adaptation or biased gene conversion? Extending the null hypothesis of molecular evolution.
    Trends Genet (4 April 2007)
    by Nicolas Galtier, Laurent Duret
    posted to no-tag by gpalidwor on 2007-06-27 21:19:20 as ** along with 6 people and 1 group bpcusack devin lusk cjeans Garamonfok gjuggler EisenLab
  • The selection of acceptable protein mutations
    PNAS (31 May 2007), 0703737104.
    by Rajkumar Sasidharan, Cyrus Chothia
    posted to no-tag by gpalidwor on 2007-06-27 21:19:00 as ** along with 2 people aalibes zwang
  • The neoselectionist theory of genome evolution
    PNAS, Vol. 104, No. 20. (15 May 2007), pp. 8385-8390.
    by Giorgio Bernardi
    posted to no-tag by gpalidwor on 2007-06-27 21:18:36 as ** along with 3 people and 2 groups mattjb zwang Garamonfok ComplexAdaptiveSystems DSTO-CAS
  • Tissue-driven hypothesis of genomic evolution and sequence-expression correlations.
    Proc Natl Acad Sci U S A (14 February 2007)
    by Xun Gu, Zhixi Su
    posted to no-tag by gpalidwor on 2007-06-27 21:18:20 as ** along with 4 people xwbcn shigepong cjeans ghattem
  • From the Cover: Transient climate-carbon simulations of planetary geoengineering
    PNAS, Vol. 104, No. 24. (12 June 2007), pp. 9949-9954.
    by Damon H Matthews, Ken Caldeira
    posted to no-tag by gpalidwor on 2007-06-27 21:12:54 as ** along with 1 person nurban
  • Evaluating a technological fix for climate.
    Proc Natl Acad Sci U S A, Vol. 104, No. 24. (12 June 2007), pp. 9915-9916.
    by PG Brewer
    posted to no-tag by gpalidwor on 2007-06-27 21:10:59 as **
  • Quantitating tissue specificity of human genes to facilitate biomarker discovery.
    Bioinformatics, Vol. 23, No. 11. (1 June 2007), pp. 1348-1355.
    by G Vasmatzis, EW Klee, DM Kube, TM Therneau, F Kosari
    posted to no-tag by gpalidwor on 2007-06-25 16:30:25 as ***** along with 2 people jyuh jdiezperezj
  • Tissue Specific Differences in Human Transfer RNA Expression
    PLoS Genetics, Vol. preprint, No. 2006. (1 November 2006), e221.eor.
    by Kimberly A Dittmar, Jeffrey M Goodenbour, Tao Pan
    posted to no-tag by gpalidwor on 2007-06-22 20:42:09 as **
  • Posttranscriptional Expression Regulation: What Determines Translation Rates?
    PLoS Comput Biol, Vol. 3, No. 3. (23 March 2007)
    by Regina Brockmann, Andreas Beyer, Jürgen J J Heinisch, Thomas Wilhelm
    posted to no-tag by gpalidwor on 2007-06-22 20:22:26 as ** along with 3 people and 1 group aswin oelemento roys Bioinformatics
  • P450 CODON USAGE RESULTS
    posted to no-tag by gpalidwor on 2007-06-14 23:57:17 as **
  • Regions of extreme synonymous codon selection in mammalian genes
    posted to no-tag by gpalidwor on 2007-06-14 23:20:20 as **
  • notes Housekeeping and tissue-specific genes in mouse tissues
    BMC Genomics, Vol. 8 (22 May 2007), 127.
    by Kouame E Kouadjo, Yuichiro Nishida, Jean F Cadrin-Girard, Mayumi Yoshioka, Jonny St-Amand
    posted to no-tag by gpalidwor on 2007-05-25 20:30:46 as ** along with 1 person jyuh
  • Threatening a rubber hand that you feel is yours elicits a cortical anxiety response
    PNAS (21 May 2007), 0610011104.
    by Henrik H Ehrsson, Katja Wiech, Nikolaus Weiskopf, Raymond J Dolan, Richard E Passingham
    posted to no-tag by gpalidwor on 2007-05-25 18:56:29 as ** along with 1 person pelikano
  • Posttranscriptional Expression Regulation: What Determines Translation Rates?
    PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e57.
    by Regina Brockmann, Andreas Beyer, Jürgen J Heinisch, Thomas Wilhelm
    posted to no-tag by gpalidwor on 2007-04-17 21:52:25 as ** along with 2 people and 1 group dayjm dpollard EisenLab
  • Predicting Gene Expression Level From Codon Usage Bias.
    Mol Biol Evol (12 October 2006)
    by Ian Henry, Paul M M Sharp
    posted to no-tag by gpalidwor on 2007-04-17 21:21:32 as **
  • A combined empirical and mechanistic codon model.
    Mol Biol Evol, Vol. 24, No. 2. (February 2007), pp. 388-397.
    by A Doron-Faigenboim, T Pupko
    posted to no-tag by gpalidwor on 2007-04-17 21:20:43 as **
  • Codon Usage Domains over Bacterial Chromosomes
    PLoS Computational Biology, Vol. 2, No. 4. (1 April 2006), e37.
    by Marc Bailly-Bechet, Antoine Danchin, Mudassar Iqbal, Matteo Marsili, Massimo Vergassola
    posted to no-tag by gpalidwor on 2007-04-15 00:17:54 as **
  • Studies on the Relationships between the Synonymous Codon Usage and Protein Secondary Structural Units
    Biochemical and Biophysical Research Communications, Vol. 269, No. 3. (24 March 2000), pp. 692-696.
    by SK Gupta, S Majumdar, TK Bhattacharya, TC Ghosh
    posted to no-tag by gpalidwor on 2007-04-11 02:25:11 as **
  • Non-random usage of 'degenerate' codons is related to protein three-dimensional structure.
    FEBS Lett, Vol. 399, No. 1-2. (9 December 1996), pp. 78-82.
    by AA Adzhubei, IA Adzhubei, IA Krasheninnikov, S Neidle
    posted to no-tag by gpalidwor on 2007-04-11 02:22:53 as ** along with 1 person saunders
  • Folding type specific secondary structure propensities of synonymous codons.
    IEEE Trans Nanobioscience, Vol. 2, No. 3. (September 2003), pp. 150-157.
    by W Gu, T Zhou, J Ma, X Sun, Z Lu
    posted to no-tag by gpalidwor on 2007-04-11 02:18:44 as ** along with 1 person saunders
  • The informational context of the third base in amino acid codons.
    Biosystems, Vol. 33, No. 2. (1994), pp. 139-148.
    by IZ Siemion, PJ Siemion
    posted to no-tag by gpalidwor on 2007-04-11 02:12:56 as **
  • A "Silent" Polymorphism in the MDR1 Gene Changes Substrate Specificity.
    Science (21 December 2006)
    by Chava Kimchi-Sarfaty, Jung Mi M Oh, In-Wha W Kim, Zuben E E Sauna, Anna Maria M Calcagno, Suresh V V Ambudkar, Michael M M Gottesman
    posted to no-tag by gpalidwor on 2007-04-10 20:55:29 as ** along with 7 people and 3 groups bicko dpollard dchughes cwbrown massivemayhem shawnh msafi EisenLab G4ID Genetics-of-Gambling
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