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gpalidwor's library [168 articles]

最近录入 gpalidwor's 文献库:按阅读优先等级排序.
  • Quantitating tissue specificity of human genes to facilitate biomarker discovery.
    Bioinformatics, Vol. 23, No. 11. (1 June 2007), pp. 1348-1355.
    by G Vasmatzis, EW Klee, DM Kube, TM Therneau, F Kosari
    posted to no-tag by gpalidwor on 2007-06-25 16:30:25 as ***** along with 2 people jyuh jdiezperezj
  • Unusual usage of AGG and TTG codons in humans and their viruses.
    Gene, Vol. 352 (6 June 2005), pp. 92-99.
    by RM Kliman, CA Bernal
    posted to bias codon zcite by gpalidwor on 2006-12-08 14:16:34 as *****
  • Codon usage bias from tRNA's point of view: redundancy, specialization, and efficient decoding for translation optimization.
    Genome Res, Vol. 14, No. 11. (November 2004), pp. 2279-2286.
    by EP Rocha
    posted to bias codon trna zcite by gpalidwor on 2006-12-08 13:58:05 as ***** along with 2 people bjorns michaelbarton
  • MotifScorer: using a compendium of microarrays to identify regulatory motifs.
    Bioinformatics (30 November 2006)
    by Matteo Brilli, Renato Fani, Pietro Lió
    posted to no-tag by gpalidwor on 2006-12-04 19:03:52 as ***** along with 2 people eckart_bindewald shigepong
  • The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells
    Nature Genetics, Vol. 38, No. 4. (05 March 2006), pp. 431-440.
    by Yuin-Han Loh, Qiang Wu, Joon-Lin Chew, Vinsensius B Vega, Weiwei Zhang, Xi Chen, Guillaume Bourque, Joshy George, Bernard Leong, Jun Liu, Kee-Yew Wong, Ken W Sung, Charlie WH Lee, Xiao-Dong Zhao, Kuo-Ping Chiu, Leonard Lipovich, Vladimir A Kuznetsov, Paul Robson, Lawrence W Stanton, Chia-Lin Wei, Yijun Ruan, Bing Lim, Huck-Hui Ng
    posted to no-tag by gpalidwor on 2006-11-24 03:33:01 as ***** along with 9 people MllePapillon jyuh cmmorel brixtonmc vega eukfn mikaelhuss idonaldson tdmckee
  • TRANSFAC: an integrated system for gene expression regulation.
    Nucleic Acids Res, Vol. 28, No. 1. (1 January 2000), pp. 316-319.
    by E Wingender, X Chen, R Hehl, H Karas, I Liebich, V Matys, T Meinhardt, M Prüss, I Reuter, F Schacherer
    posted to database factor tfbs transcription by gpalidwor on 2006-10-22 02:48:55 as ***** along with 1 person marti
  • Eurozine - Articles: blogging
    posted to no-tag by gpalidwor on 2007-01-05 15:13:31 as ****
  • Exploring genomic dark matter: A critical assessment of the performance of homology search methods on noncoding RNA.
    Genome Res (6 December 2006)
    by Eva K K Freyhult, Jonathan P P Bollback, Paul P P Gardner
    posted to no-tag by gpalidwor on 2007-01-04 17:16:08 as **** along with 9 people and 2 groups evaf jfr eckart_bindewald ppgardne dchughes aswin bjhaugen jayster4 yoanjacquemin G4ID Genetics-of-Gambling
  • The Year Russia Schooled The West
    posted to no-tag by gpalidwor on 2007-01-04 15:38:40 as ****
  • Codon Usage and Selection on Proteins
    Journal of Molecular Evolution, Vol. V63, No. 5. (14 November 2006), pp. 635-653.
    by Joshua B Plotkin, Jonathan Dushoff, Michael M Desai, Hunter B Fraser
    posted to no-tag by gpalidwor on 2006-12-15 23:16:07 as **** along with 1 person friendpine
  • tRNA properties help shape codon pair preferences in open reading frames.
    Nucleic Acids Res, Vol. 34, No. 3. (2006), pp. 1015-1027.
    by JR Buchan, LS Aucott, I Stansfield
    posted to no-tag by gpalidwor on 2006-12-14 18:12:32 as ****
  • Mutational analysis reveals two independent molecular requirements during transfer RNA selection on the ribosome.
    Nat Struct Mol Biol (10 December 2006)
    by Luisa Cochella, Julie L L Brunelle, Rachel Green
    posted to no-tag by gpalidwor on 2006-12-14 18:10:49 as ****
  • Hearing silence: non-neutral evolution at synonymous sites in mammals
    Nature Reviews Genetics, Vol. 7, No. 2., pp. 98-108.
    by JV Chamary, Joanna L Parmley, Laurence D Hurst
    posted to no-tag by gpalidwor on 2006-12-13 00:41:32 as **** along with 5 people and 1 group BioNica dgront ejeffery i000 massivemayhem YY1
  • Mammalian Mutation Pressure, Synonymous Codon Choice, and mRNA Degradation
    Journal of Molecular Evolution, Vol. 57, No. 6. (December 2003), pp. 694-701.
    by Jubao Duan, Marcosa Antezana
    posted to no-tag by gpalidwor on 2006-12-13 00:38:42 as **** along with 1 person djkt
  • Reconstructing the Genomic Architecture of Ancestral Mammals: Lessons From Human, Mouse, and Rat Genomes
    Genome Res., Vol. 14, No. 4. (1 April 2004), pp. 507-516.
    by Guillaume Bourque, Pavel A Pevzner, Glenn Tesler
    posted to divergence mouse rat by gpalidwor on 2006-12-10 02:57:00 as **** along with 4 people Neeperando Ayest balajis AaronDarling
  • Shannon information theoretic computation of synonymous codon usage biases in coding regions of human and mouse genomes.
    Genome Res, Vol. 12, No. 6. (June 2002), pp. 944-955.
    by B Zeeberg
    posted to bias codon by gpalidwor on 2006-12-10 02:07:01 as ****
  • Integrating transcription factor binding site information with gene expression datasets.
    Bioinformatics (24 November 2006)
    by Ian B B Jeffery, Stephen F F Madden, Paul A A McGettigan, Guy Perrière, Aedín C C Culhane, Desmond G G Higgins
    posted to expression motif tfbs by gpalidwor on 2006-11-29 13:10:38 as **** along with 4 people and 1 group jyuh dpollard wnpx SeungjoonOh EisenLab
  • Targeting the human genome.
    Curr Opin Biotechnol, Vol. 17, No. 6. (December 2006), pp. 659-665.
    by K Tachikawa, SP Briggs
    posted to artificial tfbs by gpalidwor on 2006-11-28 21:15:01 as ****
  • Evolving research trends in bioinformatics.
    Brief Bioinform (31 October 2006)
    by Carolina Perez-Iratxeta, Miguel A A Andrade-Navarro, Jonathan D D Wren
    posted to no-tag by gpalidwor on 2006-11-21 19:38:21 as **** along with 3 people zwang jdiezperezj waraz
  • Applied bioinformatics for the identification of regulatory elements.
    Nat Rev Genet, Vol. 5, No. 4. (April 2004), pp. 276-287.
    by WW Wasserman, A Sandelin
    posted to regulatory by gpalidwor on 2006-10-23 15:45:31 as **** along with 15 people and 8 groups mariakmejia icases ana chad_davis moborg dchughes nickluscombe johncumbers giovanni xiaobeizhao bertelsen Stew nklee jdiezperezj ArtemPankin structural_bioinformatics Bioinformatics EisenLab G4ID EBI-regulation GeschwindLab TNT Genetics-of-Gambling
  • Rapid and asymmetric divergence of duplicate genes in the human gene coexpression network.
    BMC Bioinformatics, Vol. 7 (2006)
    by WY Chung, R Albert, I Albert, A Nekrutenko, KD Makova
    posted to coexpression by gpalidwor on 2006-10-23 02:05:29 as **** along with 1 person and 1 group dpollard EisenLab
  • Coexpression analysis of human genes across many microarray data sets.
    Genome Res, Vol. 14, No. 6. (June 2004), pp. 1085-1094.
    by HK Lee, AK Hsu, J Sajdak, J Qin, P Pavlidis
    posted to coexpression microarray by gpalidwor on 2006-10-23 01:59:28 as **** along with 11 people and 2 groups nedwards jo_davies maryee giovanni jeremymiller hawkeyehammer grahamc macavity1g raylim sgoetz wilbur GeschwindLab Indigene
  • A simple method for assessing sample sizes in microarray experiments.
    BMC Bioinformatics, Vol. 7 (2006)
    by R Tibshirani
    posted to microarray sam samplesize by gpalidwor on 2006-10-23 01:50:57 as **** along with 3 people and 1 group bertelsen jen_drake ugengma Bioinformatics
  • Analysis of promoter regions of co-expressed genes identified by microarray analysis
    BMC Bioinformatics, Vol. 7 (17 August 2006), 384.
    by Srinivas Veerla, Mattias Hoglund
    posted to analysis cluster microarray tfbs by gpalidwor on 2006-10-22 03:06:16 as **** along with 5 people and 1 group nuin heliopais jfr giovanni SeungjoonOh GeschwindLab
  • Eukaryotic Regulatory Element Conservation Analysis and Identification Using Comparative Genomics
    Genome Res., Vol. 14, No. 3. (1 March 2004), pp. 451-458.
    by Yueyi Liu, Shirley X Liu, Liping Wei, Russ B Altman, Serafim Batzoglou
    posted to gibbs tfbs by gpalidwor on 2006-10-22 02:52:46 as **** along with 3 people lyongu dquest nklee
  • Claude Shannon: biologist. The founder of information theory used biology to formulate the channel capacity.
    IEEE Eng Med Biol Mag, Vol. 25, No. 1. (b 2006), pp. 30-33.
    by TD Schneider
    posted to genome information shannon theory by gpalidwor on 2006-09-25 01:41:48 as ****
  • What is genetic information, and why is it significant? A contextual, contrastive, approach.
    J Appl Philos, Vol. 23, No. 1. (2006), pp. 1-16.
    by NC Manson
    posted to genome information philosophical by gpalidwor on 2006-09-25 01:33:43 as ****
  • DBD: a transcription factor prediction database.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by SK Kummerfeld, SA Teichmann
    posted to factor transcription by gpalidwor on 2006-09-19 01:32:16 as **** along with 5 people and 1 group natstreet mariakmejia troels_marstrand nickluscombe nklee EBI-regulation
  • notes TreeSnatcher: coding trees from images.
    Bioinformatics, Vol. 23, No. 24. (15 December 2007), pp. 3384-3385.
    by T Laubach, A von Haeseler
    posted to no-tag by gpalidwor on 2007-12-17 14:08:38 as *** along with 1 person maximilianh
  • Indications that "codon boundaries" are physico-chemically defined and that protein-folding information is contained in the redundant exon bases
    Theoretical Biology and Medical Modelling, Vol. 3 (07 August 2006), 28.
    by Jan C Biro
    posted to slowcodon by gpalidwor on 2007-11-07 15:21:15 as ***
  • Protein secondary structural types are differentially coded on messenger RNA
    Protein Sci, Vol. 5, No. 10. (1 October 1996), pp. 1973-1983.
    by TA Thanaraj, P Argos
    posted to slowcodon by gpalidwor on 2007-11-07 15:18:54 as *** along with 2 people raylim msafi
  • The genetic code is nearly optimal for allowing additional information within protein-coding sequences.
    Genome Res (9 February 2007)
    by Shalev Itzkovitz, Uri Alon
    posted to no-tag by gpalidwor on 2007-02-14 21:17:05 as *** along with 7 people and 3 groups madhadron msierk raiyar grahamc raylim Minty gwenknight Bioinformatics ParkinsonLab_at_MaRS steinmetzlab
  • Isochores and tissue-specificity.
    Nucleic Acids Res, Vol. 31, No. 17. (1 September 2003), pp. 5212-5220.
    by AE Vinogradov
    posted to no-tag by gpalidwor on 2006-12-12 23:51:21 as ***
  • Quantifying the relationship between co-expression, co-regulation and gene function.
    BMC Bioinformatics, Vol. 5 (25 February 2004)
    by DJ Allocco, IS Kohane, AJ Butte
    posted to co-expression co-regulation microarray by gpalidwor on 2006-10-23 02:13:31 as *** along with 1 person maryee
  • Linking disease-associated genes to regulatory networks via promoter organization.
    Nucleic Acids Res, Vol. 33, No. 3. (2005), pp. 864-872.
    by S Döhr, A Klingenhoff, H Maier, M Hrabé de Angelis, T Werner, R Schneider
    posted to expression promoter tfbs by gpalidwor on 2006-10-22 03:34:20 as ***
  • oPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes.
    Nucleic Acids Res, Vol. 33, No. 10. (2005), pp. 3154-3164.
    by SJ Ho Sui, JR Mortimer, DJ Arenillas, J Brumm, CJ Walsh, BP Kennedy, WW Wasserman
    posted to no-tag by gpalidwor on 2006-10-22 03:13:52 as *** along with 1 person tmmurali
  • Limitations and potentials of current motif discovery algorithms
    Nucleic Acids Research, Vol. 33, No. 15. (2005), pp. 4899-4913.
    by Jianjun Hu, Bin Li, Daisuke Kihara
    posted to motif tfbs by gpalidwor on 2006-10-22 03:13:27 as *** along with 1 person dquest
  • Identification of regulatory regions which confer muscle-specific gene expression
    Journal of Molecular Biology, Vol. 278, No. 1. (24 April 1998), pp. 167-181.
    by Wyeth W Wasserman, James W Fickett
    posted to tfbs by gpalidwor on 2006-10-22 02:51:07 as *** along with 2 people and 1 group isimpson indigoviolet EisenLab
  • NCBI GEO: mining millions of expression profiles--database and tools.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by T Barrett, TO Suzek, DB Troup, SE Wilhite, WC Ngau, P Ledoux, D Rudnev, AE Lash, W Fujibuchi, R Edgar
    posted to no-tag by gpalidwor on 2005-12-26 15:45:47 as *** along with 3 people balajis xwbcn frohike
  • Knockdown of the bovine prion gene PRNP by RNA interference (RNAi) technology
    BMC Biotechnology, Vol. 7 (26 July 2007), 44.
    by Shizuyo Sutou, Miho Kunishi, Toshiyuki Kudo, Pimprapar Wongsrikeao, Makoto Miyagishi, Takeshige Otoi
    posted to no-tag by gpalidwor on 2007-12-14 02:40:39 as **
  • A TATA element is required for tRNA promoter activity and confers TATA-binding protein responsiveness in Drosophila Schneider-2 cells.
    J Biol Chem, Vol. 274, No. 16. (16 April 1999), pp. 11369-11375.
    by A Trivedi, LS Young, C Ouyang, DL Johnson, KU Sprague
    posted to no-tag by gpalidwor on 2007-12-14 02:37:23 as **
  • Transcription factor TFIIIB and transcription by RNA polymerase III.
    Biochem Soc Trans, Vol. 34, No. Pt 6. (December 2006), pp. 1082-1087.
    by GA Kassavetis, EP Geiduschek
    posted to no-tag by gpalidwor on 2007-12-14 02:31:57 as **
  • A composite upstream sequence motif potentiates tRNA gene transcription in yeast.
    J Mol Biol, Vol. 333, No. 1. (10 October 2003), pp. 1-20.
    by S Giuliodori, R Percudani, P Braglia, R Ferrari, E Guffanti, S Ottonello, G Dieci
    posted to no-tag by gpalidwor on 2007-12-14 02:28:33 as **
  • Analysis of transcription factors binding to the human 7SL RNA gene promoter.
    Biochem Cell Biol, Vol. 77, No. 5. (1999), pp. 431-438.
    by J Müller, BJ Benecke
    posted to no-tag by gpalidwor on 2007-12-14 02:19:36 as **
  • Genomic organization, chromosomal mapping and promoter analysis of the mouse selenocysteine tRNA gene transcription-activating factor (mStaf) gene.
    Biochem J, Vol. 346 Pt 1 (15 February 2000), pp. 45-51.
    by K Adachi, M Katsuyama, S Song, T Oka
    posted to no-tag by gpalidwor on 2007-12-14 02:18:01 as **
  • TFIIIC-independent in vitro transcription of yeast tRNA genes.
    J Mol Biol, Vol. 299, No. 3. (9 June 2000), pp. 601-613.
    by G Dieci, R Percudani, S Giuliodori, L Bottarelli, S Ottonello
    posted to no-tag by gpalidwor on 2007-12-14 02:12:29 as **
  • Modulation of differential transcription of tRNA genes through chromatin organization.
    Biochem J, Vol. 391, No. Pt 2. (15 October 2005), pp. 371-381.
    by A Parthasarthy, KP Gopinathan
    posted to no-tag by gpalidwor on 2007-12-14 02:04:24 as **
  • Transcriptional activation of a moderately expressed tRNA gene by a positioned nucleosome.
    Biochem J, Vol. 396, No. 3. (15 June 2006), pp. 439-447.
    by A Parthasarthy, KP Gopinathan
    posted to no-tag by gpalidwor on 2007-12-14 02:02:50 as **
  • Transcription of individual tRNA1Gly genes from within a multigene family is regulated by transcription factor TFIIIB.
    FEBS J, Vol. 272, No. 20. (October 2005), pp. 5191-5205.
    by A Parthasarthy, KP Gopinathan
    posted to no-tag by gpalidwor on 2007-12-14 02:00:18 as **
  • Folding of noncoding RNAs during transcription facilitated by pausing-induced nonnative structures
    Proceedings of the National Academy of Sciences, Vol. 104, No. 46. (13 November 2007), pp. 17995-18000.
    by Terrence N Wong, Tobin R Sosnick, Tao Pan
    posted to no-tag by gpalidwor on 2007-12-12 02:08:43 as ** along with 1 person RedmondSmyth
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