TreeSnatcher: coding trees from images.

by: T Laubach, A von Haeseler

Bioinformatics, Vol. 23, No. 24. (15 December 2007), pp. 3384-3385.

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gpalidwor (公开注释 ) - 2007-12-17 14:08:38

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摘要

TreeSnatcher is a GUI-driven JAVA application for the semi-automatic recognition of multifurcating phylogenetic trees in pixel images. The program accepts an image file as input and analyzes the topology and the metrics of a tree depicted. The analysis is carried out in a multiple-stage process using algorithms from image analysis. In the end, TreeSnatcher produces a Newick tree code that represents the tree structure optionally including branch lengths. TreeSnatcher can process trees with 100 leaves or more in a few seconds. AVAILABILITY: TreeSnatcher was developed in JAVA under Mac OS X and is executable on UNIX/Linux, Windows and Mac OS X systems. The application and its documentation can be freely downloaded from http://www.cibiv.at/software/treesnatcher.

@article{citeulike:2136624, abstract = {TreeSnatcher is a GUI-driven JAVA application for the semi-automatic recognition of multifurcating phylogenetic trees in pixel images. The program accepts an image file as input and analyzes the topology and the metrics of a tree depicted. The analysis is carried out in a multiple-stage process using algorithms from image analysis. In the end, TreeSnatcher produces a Newick tree code that represents the tree structure optionally including branch lengths. TreeSnatcher can process trees with 100 leaves or more in a few seconds. AVAILABILITY: TreeSnatcher was developed in JAVA under Mac OS X and is executable on UNIX/Linux, Windows and Mac OS X systems. The application and its documentation can be freely downloaded from http://www.cibiv.at/software/treesnatcher.}, address = {Center for Integrative Bioinformatics Vienna, Max F. Perutz Laboratories, Dr-Bohr-Gasse 9/6, A-1030 Vienna, Austria.}, author = {Laubach, T. and von Haeseler, A. }, citeulike-article-id = {2136624}, comment = {nifty}, issn = {1460-2059}, journal = {Bioinformatics}, month = {December}, number = {24}, pages = {3384--3385}, posted-at = {2007-12-17 14:08:38}, priority = {3}, title = {TreeSnatcher: coding trees from images.}, url = {http://view.ncbi.nlm.nih.gov/pubmed/17893085}, volume = {23}, year = {2007} }

RIS record

TY - JOUR ID - citeulike:2136624 L3 - citeulike-article-id:2136624 TI - TreeSnatcher: coding trees from images. JF - Bioinformatics VL - 23 IS - 24 SP - 3384 EP - 3385 AD - Center for Integrative Bioinformatics Vienna, Max F. Perutz Laboratories, Dr-Bohr-Gasse 9/6, A-1030 Vienna, Austria. SN - 1460-2059 N2 - TreeSnatcher is a GUI-driven JAVA application for the semi-automatic recognition of multifurcating phylogenetic trees in pixel images. The program accepts an image file as input and analyzes the topology and the metrics of a tree depicted. The analysis is carried out in a multiple-stage process using algorithms from image analysis. In the end, TreeSnatcher produces a Newick tree code that represents the tree structure optionally including branch lengths. TreeSnatcher can process trees with 100 leaves or more in a few seconds. AVAILABILITY: TreeSnatcher was developed in JAVA under Mac OS X and is executable on UNIX/Linux, Windows and Mac OS X systems. The application and its documentation can be freely downloaded from http://www.cibiv.at/software/treesnatcher. N1 - nifty AU - Laubach, T AU - von Haeseler, A PY - 2007/12/15/ UR - http://view.ncbi.nlm.nih.gov/pubmed/17893085 ER -

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