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ghattem's library [178 articles]

最近录入 ghattem's 文献库.
  • 'Gene shaving' as a method for identifying distinct sets of genes with similar expression patterns
    Genome Biology, Vol. 1, No. 2. (2000), pp. research0003.1-research0003.21.
    by Trevor Hastie, Robert Tibshirani, Michael Eisen, Ash Alizadeh, Ronald Levy, Louis Staudt, Wing Chan, David Botstein, Patrick Brown
    posted to microarray pca svd by ghattem on 2008-03-17 15:27:46 as ***
  • Species differences in brain gene expression profiles associated with adult behavioral maturation in honey bees
    BMC Genomics, Vol. 8 (29 June 2007), 202.
    by Moushumi S Sarma, Charles W Whitfield, Gene E Robinson
    posted to cross-species microarray pca by ghattem on 2008-03-03 20:40:22 as **
  • SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing.
    Genome Res, Vol. 17, No. 11. (November 2007), pp. 1697-1706.
    by Juliane C C Dohm, Claudio Lottaz, Tatiana Borodina, Heinz Himmelbauer
    posted to solexa by ghattem on 2008-03-03 20:10:42 as ** along with 8 people and 1 group iris42 jwhitney timflutre stajich azazello GustavoLacerda niallhaslam flexer Berkeley Mycology
  • Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
    Nature (17 February 2008)
    by Shawn J Cokus, Suhua Feng, Xiaoyu Zhang, Zugen Chen, Barry Merriman, Christian D Haudenschild, Sriharsa Pradhan, Stanley F Nelson, Matteo Pellegrini, Steven E Jacobsen
    posted to solexa by ghattem on 2008-03-03 20:10:20 as ** along with 4 people djkt epigenetics mdimon slonik
  • SOAP: short oligonucleotide alignment program.
    Bioinformatics (28 January 2008)
    by Ruiqiang Li, Yingrui Li, Karsten Kristiansen, Jun Wang
    posted to solexa by ghattem on 2008-03-03 20:08:55 as ** along with 6 people urgi caseybrown jyuh GustavoLacerda niallhaslam mdimon
  • Using quality scores and longer reads improves accuracy of Solexa read mapping
    BMC Bioinformatics, Vol. 9 (28 February 2008), 128.
    by Andrew D Smith, Zhenyu Xuan, Michael Q Zhang
    posted to solexa by ghattem on 2008-03-03 20:08:14 as ** along with 5 people heliopais kmdaily farhat caseybrown mdimon
  • How to extract marker genes from microarray data sets.
    Conf Proc IEEE Eng Med Biol Soc, Vol. 1 (2007), pp. 4215-4218.
    by R Schachtner, D Lutter, FJ Theis, EW Lang, G Schmitz, AM Tome, P Vilda
    posted to ica microarray pca by ghattem on 2008-03-03 20:05:29 as ***
  • Analyzing M-CSF dependent monocyte/macrophage differentiation: expression modes and meta-modes derived from an independent component analysis
    BMC Bioinformatics, Vol. 9 (17 February 2008), 100.
    by Dominik Lutter, Peter Ugocsai, Margot Grandl, Evelyn Orso, Fabian Theis, Elmar W Lang, Gerd Schmitz
    posted to ica microarray by ghattem on 2008-03-03 20:04:12 as ***
  • Molecular diagnosis of human cancer type by gene expression profiles and independent component analysis
    European Journal of Human Genetics, Vol. aop, No. current.
    by Xue W Zhang, Yee L Yap, Dong Wei, Feng Chen, Antoine Danchin,
    posted to ica microarray by ghattem on 2008-03-03 20:03:24 as **
  • Independent component analysis reveals new and biologically significant structures in micro array data
    BMC Bioinformatics, Vol. 7 (08 June 2006), 290.
    by Attila Frigyesi, Srinivas Veerla, David Lindgren, Mattias Hoglund
    posted to ica microarray by ghattem on 2008-03-03 20:02:53 as *** along with 4 people jfr sarveshjangid gespim lp2
  • Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package annotationTools
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Alexandre Kuhn, Ruth L Carter, Mauro Delorenzi
    posted to annotation bioconductor cross-species microarray by ghattem on 2008-02-07 23:20:19 as *** along with 9 people bertelsen ablejec zhouyu jyuh jfr balicea dullhunk RamuAnandakrishnan heliopais
  • AffyTrees: Facilitating Comparative Analysis of Affymetrix Plant Microarray Chips.
    Plant Physiol, Vol. 146, No. 2. (February 2008), pp. 377-386.
    by Tancred Frickey, Vagner Augusto A Benedito, Michael Udvardi, Georg Weiller
    posted to affymetrix microarray orthologues by ghattem on 2008-02-07 23:15:59 as ***
  • Statistical similarities between transcriptomics and quantitative shotgun proteomics data.
    Mol Cell Proteomics (19 November 2007)
    by Norman Pavelka, Marjorie L L Fournier, Selene K K Swanson, Mattia Pelizzola, Paola Ricciardi-Castagnoli, Laurence Florens, Michael P P Washburn
    posted to microarray proteomics by ghattem on 2008-02-03 22:08:05 as ***
  • Gene expression profiling by massively parallel sequencing
    Genome Res. (21 November 2007), gr.6984908.
    by Tatiana T Torres, Muralidhar Metta, Birgit Ottenwalder, Christian Schlotterer
    posted to 454seq digitalgeneexpression by ghattem on 2008-01-30 16:32:33 as *** along with 9 people gracio jyuh jfr dchughes stsaft echinotrix giovanni idonaldson ohara
  • Moderated Statistical Tests for Assessing Differences in Tag Abundance.
    Bioinformatics (19 September 2007)
    by Mark D D Robinson, Gordon K K Smyth
    posted to digitalgeneexpression by ghattem on 2008-01-30 16:15:01 as *** along with 2 people jyuh rdiaz
  • A complex oscillating network of signaling genes underlies the mouse segmentation clock.
    Science, Vol. 314, No. 5805. (8 December 2006), pp. 1595-1598.
    by ML Dequéant, E Glynn, K Gaudenz, M Wahl, J Chen, A Mushegian, O Pourquié
    posted to affymetrix cyclicgenes microarray by ghattem on 2008-01-14 19:16:36 as read along with 3 people and 1 group brant balicea maralena EisenLab
  • Faced with inequality: Chicken does not have a general dosage compensation of sex-linked genes
    BMC Biology, Vol. 5 (20 September 2007), 40.
    by Hans Ellegren, Lina Hultin-Rosenberg, Bjorn Brunstrom, Lennart Denker, Kim Kultimaa, Birger Scholz
    posted to chicken microarray by ghattem on 2007-12-12 17:16:26 as ***
  • Dosage compensation is less effective in birds than in mammals
    Journal of Biology, Vol. 6 (22 March 2007), 2.
    by Yuichiro Itoh, Esther Melamed, Xia Yang, Kathy Kampf, Susanna Wang, Nadir Yehya, Atila Van Nas, Kirstin Replogle, Mark R Band, David F Clayton, Eric E Schadt, Aldons J Lusis, Arthur P Arnold
    posted to chicken microarray by ghattem on 2007-12-12 17:11:04 as ***
  • Regional differences in dosage compensation on the chicken Z chromosome.
    Genome Biol, Vol. 8, No. 9. (27 September 2007)
    by Esther Melamed, Arthur P Arnold
    posted to chicken microarray by ghattem on 2007-12-12 17:04:11 as ***
  • TimeClust: a clustering tool for gene expression time series.
    Bioinformatics (6 December 2007)
    by Paolo Magni, Fulvia Ferrazzi, Lucia Sacchi, Riccardo Bellazzi
    posted to clustering microarray timeseries by ghattem on 2007-12-12 16:34:36 as *** along with 2 people cannin dps
  • Novel definition files for human GeneChips based on GeneAnnot
    BMC Bioinformatics, Vol. 8 (15 November 2007), 446.
    by Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, Alexandra Sirota, Marilyn Safran, Michael Shmoish, Sergio Ferrari, Doron Lancet, Gian A Danieli, Silvio Bicciato
    posted to affymetrix microarray by ghattem on 2007-11-19 22:36:25 as ** along with 1 person jfr
  • Gaining confidence in biological interpretation of the microarray data: the functional consistence of the significant GO categories.
    Bioinformatics (15 November 2007)
    by Da Yang, Yanhui Li, Hui Xiao, Qing Liu, Min Zhang, Jing Zhu, Wencai Ma, Chen Yao, Jing Wang, Dong Wang, Zheng Guo, Baofeng Yang
    posted to microarray by ghattem on 2007-11-19 22:30:36 as ** along with 2 people jyuh jfr
  • A power law global error model for the identification of differentially expressed genes in microarray data
    BMC Bioinformatics, Vol. 5, No. 1. (2004)
    by Norman Pavelka, Mattia Pelizzola, Caterina Vizzardelli, Monica Capozzoli, Andrea Splendiani, Francesca Granucci, Paola R Castagnoli
    posted to no-tag by ghattem on 2007-11-08 16:38:55 as read along with 1 person bertelsen
  • Developmental reprogramming after chromosome transfer into mitotic mouse zygotes
    Nature, Vol. 447, No. 7145., pp. 679-685.
    by Dieter Egli, Jacqueline Rosains, Garrett Birkhoff, Kevin Eggan
    posted to no-tag by ghattem on 2007-11-06 16:27:00 as **
  • Global analysis of positive and negative pre-mRNA splicing regulators in Drosophila.
    Genes Dev, Vol. 19, No. 11. (1 June 2005), pp. 1306-1314.
    by M Blanchette, RE Green, SE Brenner, DC Rio
    posted to no-tag by ghattem on 2007-11-01 22:13:40 as **
  • Preferential occupancy of histone variant H2AZ at inactive promoters influences local histone modifications and chromatin remodeling.
    Proc Natl Acad Sci U S A, Vol. 102, No. 51. (20 December 2005), pp. 18385-18390.
    by B Li, SG Pattenden, D Lee, J Gutiérrez, J Chen, C Seidel, J Gerton, JL Workman
    posted to no-tag by ghattem on 2007-11-01 22:10:46 as ** along with 1 person nirfriedman
  • Genome-wide analysis reveals an unexpected function for the Drosophila splicing factor U2AF50 in the nuclear export of intronless mRNAs.
    Mol Cell, Vol. 14, No. 6. (18 June 2004), pp. 775-786.
    by M Blanchette, E Labourier, RE Green, SE Brenner, DC Rio
    posted to no-tag by ghattem on 2007-11-01 22:06:16 as **
  • Extrusion and Death of DPP/BMP-Compromised Epithelial Cells in the Developing Drosophila Wing
    Science, Vol. 307, No. 5716. (18 March 2005), pp. 1785-1789.
    by Matthew C Gibson, Norbert Perrimon
    posted to no-tag by ghattem on 2007-11-01 21:53:48 as **
  • Tcof1/Treacle is required for neural crest cell formation and proliferation deficiencies that cause craniofacial abnormalities
    Proceedings of the National Academy of Sciences, Vol. 103, No. 36. (5 September 2006), pp. 13403-13408.
    by Jill Dixon, Natalie C Jones, Lisa L Sandell, Sachintha M Jayasinghe, Jennifer Crane, Jean-Philippe Rey, Michael J Dixon, Paul A Trainor
    posted to no-tag by ghattem on 2007-11-01 21:50:01 as **
  • Reprogramming metastatic melanoma cells to assume a neural crest cell-like phenotype in an embryonic microenvironment
    Proceedings of the National Academy of Sciences, Vol. 103, No. 10. (7 March 2006), pp. 3752-3757.
    by Paul M Kulesa, Jennifer C Kasemeier-Kulesa, Jessica M Teddy, Naira V Margaryan, Elisabeth A Seftor, Richard E Seftor, Mary J Hendrix
    posted to no-tag by ghattem on 2007-11-01 21:43:20 as **
  • Identification and Characterization of a Schizosaccharomyces pombe RNA Polymerase II Elongation Factor with Similarity to the Metazoan Transcription Factor ELL.
    J Biol Chem, Vol. 282, No. 8. (23 February 2007), pp. 5761-5769.
    by CA Banks, SE Kong, H Spahr, L Florens, S Martin-Brown, MP Washburn, JW Conaway, A Mushegian, RC Conaway
    posted to no-tag by ghattem on 2007-11-01 21:38:46 as **
  • RDH10 is essential for synthesis of embryonic retinoic acid and is required for limb, craniofacial, and organ development
    Genes Dev., Vol. 21, No. 9. (1 May 2007), pp. 1113-1124.
    by Lisa L Sandell, Brian W Sanderson, Gennadiy Moiseyev, Teri Johnson, Arcady Mushegian, Kendra Young, Jean-Philippe Rey, Jian-Xing Ma, Karen Staehling-Hampton, Paul A Trainor
    posted to no-tag by ghattem on 2007-11-01 21:35:42 as **
  • Expression of Hoxa2 in rhombomere 4 is regulated by a conserved cross-regulatory mechanism dependent upon Hoxb1.
    Dev Biol, Vol. 302, No. 2. (15 February 2007), pp. 646-660.
    by S Tümpel, F Cambronero, E Ferretti, F Blasi, LM Wiedemann, R Krumlauf
    posted to no-tag by ghattem on 2007-11-01 21:27:13 as **
  • Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo.
    Genes Dev, Vol. 21, No. 4. (15 February 2007), pp. 385-390.
    by J Zeitlinger, RP Zinzen, A Stark, M Kellis, H Zhang, RA Young, M Levine
    posted to chiponchip microarray by ghattem on 2007-11-01 21:21:13 as ** along with 6 people and 2 groups dpollard kengg johncumbers gsrats jtomasch Stew EisenLab Plantandetc
  • Combined analysis reveals a core set of cycling genes
    Genome Biology, Vol. 8 (24 July 2007), R146.
    by Yong Lu, Shaun Mahony, Panayiotis V Benos, Roni Rosenfeld, Itamar Simon, Linda L Breeden, Ziv Bar-Joseph
    posted to cyclicgenes microarray by ghattem on 2007-11-01 21:04:16 as **
  • Comparative analysis of microarray normalization procedures: effects on reverse engineering gene networks.
    Bioinformatics, Vol. 23, No. 13. (1 July 2007)
    by WK Lim, K Wang, C Lefebvre, A Califano
    posted to genenetworks microarray normalization by ghattem on 2007-11-01 21:01:18 as ** along with 2 people shigepong heliopais
  • Clustering Microarray-Derived Gene Lists through Implicit Literature Relationships.
    Bioinformatics (30 May 2007)
    by Mark F F Burkart, Jonathan D D Wren, Jason I I Herschkowitz, Charles M M Perou, Harold R R Garner
    posted to clustering literaturemining microarray by ghattem on 2007-11-01 20:58:01 as ** along with 5 people and 1 group jyuh jfr yas dullhunk Barend T_lab
  • Literature mining for the biologist: from information retrieval to biological discovery
    Nature Reviews Genetics, Vol. 7, No. 2., pp. 119-129.
    by Lars J Jensen, Jasmin Saric, Peer Bork
    posted to literaturemining by ghattem on 2007-11-01 20:53:19 as ** along with 23 people and 3 groups skumagai TheresaNiederberger Enro jyuh kuhn yas dullhunk hpiwowar dgront caporaso zlu jacky957 lynnefox jdiggans cjeans michaelmampaey ibuch dejori jandot mircea farzanehs larsjuhljensen adoms T_lab biomedical-nlp ADMiRes
  • Bootstrapping cluster analysis: assessing the reliability of conclusions from microarray experiments.
    Proc Natl Acad Sci U S A, Vol. 98, No. 16. (31 July 2001), pp. 8961-8965.
    by MK Kerr, GA Churchill
    posted to bootstrap clustering microarray by ghattem on 2007-11-01 20:22:47 as ** along with 1 person textoris
  • Pvclust: an R package for assessing the uncertainty in hierarchical clustering.
    Bioinformatics, Vol. 22, No. 12. (15 June 2006), pp. 1540-1542.
    by R Suzuki, H Shimodaira
    posted to bootstrap clustering microarray by ghattem on 2007-11-01 20:18:26 as ** along with 6 people quianominorleo jfr maryee wnpx josepe elfar
  • Bootstrap confidence levels for phylogenetic trees.
    Proc Natl Acad Sci U S A, Vol. 93, No. 23. (12 November 1996), pp. 13429-13434.
    by B Efron, E Halloran, S Holmes
    posted to bootstrap phylogeny by ghattem on 2007-11-01 20:15:37 as ** along with 1 person friendpine
  • Conservation of Regional Gene Expression in Mouse and Human Brain
    PLoS Genetics, Vol. 3, No. 4. (1 April 2007), e59.
    by Andrew D Strand, Aaron K Aragaki, Zachary C Baquet, Angela Hodges, Philip Cunningham, Peter Holmans, Kevin R Jones, Lesley Jones, Charles Kooperberg, James M Olson
    posted to cross-species microarray by ghattem on 2007-11-01 19:07:21 as ** along with 5 people and 1 group nickluscombe Iden-J_GluR cjeans suizan ppark EBI-regulation
  • Discovering gene expression patterns in Time Course Microarray Experiments by ANOVA-SCA.
    Bioinformatics (22 May 2007)
    by María José J Nueda, Ana Conesa, Johan A A Westerhuis, Huub C J C Hoefsloot, Age K K Smilde, Manuel Talón, Alberto Ferrer
    posted to microarray timeseries by ghattem on 2007-11-01 16:58:17 as ** along with 4 people rvosa shigepong ugengma sgoetz
  • Multivariate curve resolution of time course microarray data
    BMC Bioinformatics, Vol. 7 (13 July 2006), 343.
    by Peter D Wentzell, Tobias K Karakach, Sushmita Roy, Juanita Martinez, Christopher P Allen, Margaret Werner-Washburne
    posted to microarray timeseries by ghattem on 2007-11-01 16:54:54 as ** along with 1 person ptrobajo
  • Interpretation of ANOVA models for microarray data using PCA.
    Bioinformatics (14 November 2006)
    by J R R de Haan, R Wehrens, S Bauerschmidt, E Piek, R C C van Schaik, L M C M Buydens
    posted to anova microarray pca by ghattem on 2007-11-01 16:51:25 as ** along with 2 people maldi shigepong
  • Relational patterns of gene expression via non-metric multidimensional scaling analysis.
    Bioinformatics, Vol. 21, No. 6. (March 2005), pp. 730-740.
    by YH Taguchi, Y Oono
    posted to mds microarray by ghattem on 2007-11-01 16:46:49 as ** along with 1 person hito
  • Elucidating the Altered Transcriptional Programs in Breast Cancer using Independent Component Analysis
    PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e161.
    by Andrew E Teschendorff, Michel Journée, Pierre A Absil, Rodolphe Sepulchre, Carlos Caldas
    posted to ica microarray pca by ghattem on 2007-11-01 16:42:53 as ** along with 2 people jfr krokicki
  • Mining gene expression data by interpreting principal components.
    BMC Bioinformatics, Vol. 7 (2006)
    by JC Roden, BW King, D Trout, A Mortazavi, BJ Wold, CE Hart
    posted to microarray pca by ghattem on 2007-11-01 16:37:49 as ** along with 4 people and 1 group isimpson jyuh dps aubinhon Integrative_biology_behavior
  • PhylArray: phylogenetic probe design algorithm for microarray.
    Bioinformatics, Vol. 23, No. 19. (1 October 2007), pp. 2550-2557.
    by C Militon, S Rimour, M Missaoui, C Biderre, V Barra, D Hill, A Moné, G Gagne, H Meier, E Peyretaillade, P Peyret
    posted to microarray by ghattem on 2007-11-01 16:10:12 as **
  • 4DXpress: a database for cross-species expression pattern comparisons.
    Nucleic Acids Res (4 October 2007)
    by Yannick Haudry, Hugo Berube, Ivica Letunic, Paul-Daniel D Weeber, Julien Gagneur, Charles Girardot, Misha Kapushesky, Detlev Arendt, Peer Bork, Alvis Brazma, Eileen Furlong, Joachim Wittbrodt, Thorsten Henrich
    posted to cross-species microarray by ghattem on 2007-10-31 14:01:59 as ** along with 2 people ptrobajo jyuh
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