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friendpine's library [58 articles]

最近录入 friendpine's 文献库.
  • Inference of selection from multiple species alignments.
    Curr Opin Genet Dev, Vol. 12, No. 6. (December 2002), pp. 688-694.
    by Z Yang
    posted to yangziheng by friendpine on 2008-06-28 07:28:54 as ** along with 2 people operon mingzhi
  • Rewiring the specificity of two-component signal transduction systems.
    Cell, Vol. 133, No. 6. (13 June 2008), pp. 1043-1054.
    by JM Skerker, BS Perchuk, A Siryaporn, EA Lubin, O Ashenberg, M Goulian, MT Laub
    posted to synthetic-biology by friendpine on 2008-06-20 15:20:50 as **
  • Dynamical resonance can account for seasonality of influenza epidemics.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 48. (30 November 2004), pp. 16915-16916.
    by J Dushoff, JB Plotkin, SA Levin, DJ Earn
    posted to influenza-seasonality by friendpine on 2008-06-13 01:09:55 as **
  • Codon Usage and Selection on Proteins
    Journal of Molecular Evolution, Vol. V63, No. 5. (14 November 2006), pp. 635-653.
    by Joshua B Plotkin, Jonathan Dushoff, Michael M Desai, Hunter B Fraser
    posted to estimating-selection-pressure by friendpine on 2008-06-13 01:09:21 as ** along with 1 person gpalidwor
  • Estimating Selection Pressures from Limited Comparative Data.
    Mol Biol Evol (5 June 2006)
    by Joshua B B Plotkin, Jonathan Dushoff, Michael M M Desai, Hunter B B Fraser
    posted to estimating-selection-pressure by friendpine on 2008-06-13 01:09:00 as ** along with 4 people and 1 group bnchakraborty dpollard djkt BioNica EisenLab
  • Detecting selection using a single genome sequence of M. tuberculosis and P. falciparum
    Nature, Vol. 428, No. 6986. (29 April 2004), pp. 942-945.
    by Joshua B Plotkin, Jonathan Dushoff, Hunter B Fraser
    posted to estimating-selection-pressure by friendpine on 2008-06-13 01:08:39 as ** along with 1 person BioNica
  • Evolution and topology in the yeast protein interaction network.
    Genome Res, Vol. 14, No. 7. (July 2004), pp. 1310-1314.
    by S Wuchty
    posted to evolution-of-network by friendpine on 2008-06-06 05:17:06 as ** along with 2 people carlk koller
  • Evolution of the yeast protein interaction network
    Proceedings of the National Academy of Sciences, Vol. 100, No. 22. (28 October 2003), pp. 12820-12824.
    by Hong Qin, Henry H Lu, Wei B Wu, Wen-Hsiung Li
    posted to network by friendpine on 2008-06-06 05:16:39 as **
  • Adjusting for selection on synonymous sites in estimates of evolutionary distance.
    Mol Biol Evol, Vol. 22, No. 1. (January 2005), pp. 174-177.
    by AE Hirsh, HB Fraser, DP Wall
    posted to natural-selection by friendpine on 2008-06-06 05:15:16 as ** along with 2 people michaelbarton Ema
  • Evolutionary rate in the protein interaction network.
    Science, Vol. 296, No. 5568. (26 April 2002), pp. 750-752.
    by HB Fraser, AE Hirsh, LM Steinmetz, C Scharfe, MW Feldman
    posted to network evolution and by friendpine on 2008-06-06 02:10:06 as ** along with 4 people dragonrez bjorns timflutre tale
  • Natural selection for nucleotide usage at synonymous and nonsynonymous sites in influenza A virus genes.
    Journal of virology, Vol. 82, No. 10. (May 2008), pp. 4938-4945.
    by S Kryazhimskiy, GA Bazykin, J Dushoff
    posted to usage influenza code by friendpine on 2008-06-05 16:19:12 as **
  • PLoS ONE: Global Considerations in Hierarchical Clustering Reveal Meaningful Patterns in Data
    posted to hierarchical cluster by friendpine on 2008-05-22 04:58:41 as **
  • On evolutionary conservation of thermodynamic coupling in proteins.
    J Biol Chem, Vol. 279, No. 18. (30 April 2004), pp. 19046-19050.
    by AA Fodor, RW Aldrich
    posted to mcbasc by friendpine on 2008-05-17 02:59:25 as ** along with 6 people and 2 groups ca3295 ana barry gbart cjeans tale structural_bioinformatics Bioinformatics
  • Analysis of the residue-residue coevolution network and the functionally important residues in proteins
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Byung-Chul Lee, Keunwan Park, Dongsup Kim
    posted to network coevolution aa-aa by friendpine on 2008-05-16 09:54:40 as ** along with 7 people and 2 groups wilbur barry neils sobolevnrm mingzhi penpen926 scienbox structural_bioinformatics baker-group
  • Estimating the size of the human interactome
    Proceedings of the National Academy of Sciences (12 May 2008), 0708078105.
    by Michael P Stumpf, Thomas Thorne, Eric de Silva, Ronald Stewart, Hyeong J An, Michael Lappe, Carsten Wiuf
    posted to interactome human by friendpine on 2008-05-15 01:48:43 as ** along with 18 people chad_davis Evangelia balicea marck paolomarcatili sanchezbuelna cabbagesofdoom xingxu mjoach jyuh chrissp100 zwang roys brianb Ema neils tmmurali phoenixzxl
  • Hemagglutinin sequence clusters and the antigenic evolution of influenza A virus.
    Proc Natl Acad Sci U S A, Vol. 99, No. 9. (30 April 2002), pp. 6263-6268.
    by JB Plotkin, J Dushoff, SA Levin
    posted to ha by friendpine on 2008-05-09 09:58:50 as ** along with 1 person bpb
  • TreeViewJ: An application for viewing and analyzing phylogenetic trees.
    Source code for biology and medicine, Vol. 2 (2007)
    by MW Peterson, ME Colosimo
    posted to viewtreej by friendpine on 2008-05-07 15:35:09 as **
  • Bootstrap confidence levels for phylogenetic trees.
    Proc Natl Acad Sci U S A, Vol. 93, No. 23. (12 November 1996), pp. 13429-13434.
    by B Efron, E Halloran, S Holmes
    posted to bootstrap by friendpine on 2008-05-03 16:07:58 as ** along with 1 person ghattem
  • Solving the protein sequence metric problem.
    Proc Natl Acad Sci U S A, Vol. 102, No. 18. (3 May 2005), pp. 6395-6400.
    by WR Atchley, J Zhao, AD Fernandes, T Drüke
    posted to to number aa by friendpine on 2008-05-03 10:16:17 as ** along with 2 people and 2 groups ana barry structural_bioinformatics Bioinformatics
  • Networks of Coevolving Sites in Structural and Functional Domains of Serpin Proteins
    Molecular Biology and Evolution, Vol. 22, No. 7. (15 July 2005), pp. 1627-1634.
    by Michael J Buck, William R Atchley
    posted to no-tag by friendpine on 2008-05-03 10:10:21 as ** along with 2 people cjeans tale
  • Separation of phylogenetic and functional associations in biological sequences by using the parametric bootstrap.
    Proc Natl Acad Sci U S A, Vol. 97, No. 7. (28 March 2000), pp. 3288-3291.
    by KR Wollenberg, WR Atchley
    posted to mutation correlated by friendpine on 2008-05-03 03:52:16 as ** along with 1 person and 2 groups barry structural_bioinformatics Bioinformatics
  • Correlations among amino acid sites in bHLH protein domains: an information theoretic analysis.
    Mol Biol Evol, Vol. 17, No. 1. (January 2000), pp. 164-178.
    by WR Atchley, KR Wollenberg, WM Fitch, W Terhalle, AW Dress
    posted to mutation correlation by friendpine on 2008-05-03 03:52:04 as ** along with 1 person and 2 groups barry structural_bioinformatics Bioinformatics
  • Cancer as an evolutionary and ecological process
    Nature Reviews Cancer, Vol. 6, No. 12. (16 November 2006), pp. 924-935.
    by Lauren MF Merlo, John W Pepper, Brian J Reid, Carlo C Maley
    posted to evolution ecology cancer and by friendpine on 2008-04-26 16:39:37 as ** along with 3 people jyuh laurabailey Petersarkies
  • Mutation Pressure and the Evolution of Organelle Genomic Architecture
    Science, Vol. 311, No. 5768. (24 March 2006), pp. 1727-1730.
    by Michael Lynch, Britt Koskella, Sarah Schaack
    posted to the pressure organelle of mutation genomic evolution architecture and by friendpine on 2008-04-26 16:38:24 as ** along with 3 people and 1 group stevanspringer cmm gerry FAB-lab
  • 20 Questions on Adaptive Dynamics
    Journal of Evolutionary Biology, Vol. 18, No. 5. (September 2005), pp. 1139-1154.
    by D Waxman, S Gavrilets
    posted to questions on dynamics adaptive 20 by friendpine on 2008-04-26 16:33:55 as ** along with 4 people and 2 groups stevanspringer ryang nathanielvirgo Koh FAB-lab ikeg-lab
  • Influenza drift and epidemic size: the race between generating and escaping immunity.
    Theoretical population biology, Vol. 65, No. 2. (March 2004), pp. 179-191.
    by MF Boni, JR Gog, V Andreasen, FB Christiansen
    posted to influenza by friendpine on 2008-04-26 16:24:32 as **
  • Diffusion model of intergroup selection, with special reference to evolution of an altruistic character.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 80, No. 20. (October 1983), pp. 6317-6321.
    by Motoo Kimura
    posted to neutral evolution by friendpine on 2008-04-26 16:19:41 as **
  • Genetic variability and effective population size when local extinction and recolonization of subpopulations are frequent.
    Proc Natl Acad Sci U S A, Vol. 77, No. 11. (November 1980), pp. 6710-6714.
    by Takeo Maruyama, Motoo Kimura
    posted to neutral evolution by friendpine on 2008-04-26 16:19:38 as ** along with 1 person ryanraaum
  • Average time until fixation of a mutant allele in a finite population under continued mutation pressure: Studies by analytical, numerical, and pseudo-sampling methods.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 77, No. 1. (January 1980), pp. 522-526.
    by Motoo Kimura
    posted to neutral evolution by friendpine on 2008-04-26 16:19:34 as **
  • Genetic variability maintained in a finite population under mutation and autocorrelated random fluctuation of selection intensity.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 76, No. 11. (November 1979), pp. 5813-5817.
    by Naoyuki Takahata, Motoo Kimura
    posted to neutral evolution by friendpine on 2008-04-26 16:19:31 as **
  • Efficiency of truncation selection.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 76, No. 1. (January 1979), pp. 396-399.
    by James F F Crow, Motoo Kimura
    posted to neutral evolution by friendpine on 2008-04-26 16:19:04 as **
  • The genomic and epidemiological dynamics of human influenza A virus
    Nature (16 April 2008)
    by Andrew Rambaut, Oliver G Pybus, Martha I Nelson, Cecile Viboud, Jeffery K Taubenberger, Edward C Holmes
    posted to evolution influenza by friendpine on 2008-04-19 10:00:46 as ** along with 2 people emptyhb smbe2008
  • Codon bias and frequency-dependent selection on the hemagglutinin epitopes of influenza A virus
    PNAS, Vol. 100, No. 12. (10 June 2003), pp. 7152-7157.
    by Joshua B Plotkin, Jonathan Dushoff
    posted to and bias code influenza by friendpine on 2008-04-17 10:19:37 as ** along with 1 person BioNica
  • The generation of influenza outbreaks by a network of host immune responses against a limited set of antigenic types
    Proceedings of the National Academy of Sciences, Vol. 104, No. 18. (1 May 2007), pp. 7711-7716.
    by Mario Recker, Oliver G Pybus, Sean Nee, Sunetra Gupta
    posted to adaption influenza by friendpine on 2008-04-15 16:24:27 as **
  • [duplicate] Long term trends in the evolution of H(3) HA1 human influenza type A.
    Proc Natl Acad Sci U S A, Vol. 94, No. 15. (22 July 1997), pp. 7712-7718.
    by WM Fitch, RM Bush, CA Bender, NJ Cox
    posted to ha1 evolution by friendpine on 2008-04-15 14:01:44 as **
  • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions.
    Mol Biol Evol, Vol. 3, No. 5. (September 1986), pp. 418-426.
    by M Nei, T Gojobori
    posted to and detecting for method nonsynonymous substitution synonymous by friendpine on 2008-04-15 13:59:19 as ** along with 5 people and 1 group CharlesM jmeppley hdopazo usagi-kirin ankur_iitg BioinfoCIPF
  • Long term trends in the evolution of H(3) HA1 human influenza type A.
    Proc Natl Acad Sci U S A, Vol. 94, No. 15. (22 July 1997), pp. 7712-7718.
    by WM Fitch, RM Bush, CA Bender, NJ Cox
    posted to evolution ha1 by friendpine on 2008-04-14 01:55:19 as ** along with 1 person bpb
  • Rapid Evolution of a Homeodomain: Evidence for Positive Selection
    Journal of Molecular Evolution, Vol. 45, No. 6. (24 December 1997), pp. 579-588.
    by Keith A Sutton, Miles F Wilkinson
    posted to positive selection by friendpine on 2008-04-14 01:54:31 as **
  • Positive and negative selection on the human genome.
    Genetics, Vol. 158, No. 3. (July 2001), pp. 1227-1234.
    by JC Fay, GJ Wyckoff, CI Wu
    posted to and netative positive selection by friendpine on 2008-04-14 01:52:33 as ** along with 5 people and 1 group shoshin skumagai stevanspringer ramensky ankur_iitg FAB-lab
  • Positive and Negative Selection in the DAZ Gene Family
    Mol Biol Evol, Vol. 18, No. 4. (1 April 2001), pp. 523-529.
    by Joseph P Bielawski, Ziheng Yang
    posted to and negative positive selection by friendpine on 2008-04-14 01:51:30 as **
  • Simulating DNA coding sequence evolution with EvolveAGene 3
    Mol Biol Evol (12 January 2008), msn008.
    by Barry G Hall
    posted to evolution gene predicting by friendpine on 2008-04-09 13:27:27 as ** along with 4 people adacier operon aprasad zwang
  • Quantifying influenza vaccine efficacy and antigenic distance.
    Vaccine, Vol. 24, No. 18. (1 May 2006), pp. 3881-3888.
    by V Gupta, DJ Earl, MW Deem
    posted to a antig distance for measure new by friendpine on 2008-04-07 16:20:45 as **
  • Bioinformatics models for predicting antigenic variants of influenza A/H3N2 virus
    Bioinformatics, Vol. 24, No. 4. (15 February 2008), pp. 505-512.
    by Yu-Chieh Liao, Min-Shi Lee, Chin-Yu Ko, Chao A Hsiung
    posted to h3n2 predicting variants by friendpine on 2008-04-06 13:49:09 as **
  • Hepatitis C virus NS5A anchor peptide disrupts human immunodeficiency virus
    posted to hiv by friendpine on 2008-04-02 02:14:42 as **
  • Predicting the evolution of human influenza A.
    Science, Vol. 286, No. 5446. (3 December 1999), pp. 1921-1925.
    by RM Bush, CA Bender, K Subbarao, NJ Cox, WM Fitch
    posted to evolution ha predicting by friendpine on 2008-03-31 16:41:47 as **
  • A Space-Time Process Model for the Evolution of DNA Sequences
    Genetics, Vol. 139, No. 2. (1 February 1995), pp. 993-1005.
    by Z Yang
    posted to ctmp by friendpine on 2008-03-30 14:18:25 as ** along with 3 people pradiptaray bpb tale
  • N&bond;H?O, O&bond;H?O, and C&bond;H?O hydrogen bonds in protein-ligand complexes: Strong and weak interactions in molecular recognition
    Proteins: Structure, Function, and Bioinformatics, Vol. 54, No. 2. (2004), pp. 247-259.
    by Sanjay Sarkhel, Gautam R Desiraju
    posted to bonding hydrogen by friendpine on 2008-03-27 03:16:50 as ** along with 1 person blackbart
  • Strong and weak hydrogen bonds in the protein-ligand interface.
    Proteins (5 January 2007)
    by Sunil K K Panigrahi, Gautam R R Desiraju
    posted to bond hydrogen by friendpine on 2008-03-27 03:16:27 as ** along with 2 people and 1 group BragilMassoud cat_worth structural_bioinformatics
  • Untitled
    posted to influenza prediction by friendpine on 2008-03-27 02:51:37 as **
  • Effectiveness of correlation analysis in identifying protein residues undergoing correlated evolution.
    Protein Eng, Vol. 10, No. 6. (June 1997), pp. 647-657.
    by DD Pollock, WR Taylor
    posted to correlated mutation by friendpine on 2008-03-24 11:10:27 as ** along with 1 person and 1 group caporaso biomedical-nlp
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