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djkt's library [462 articles]

最近录入 djkt's 文献库.
  • High-resolution mapping of meiotic crossovers and non-crossovers in yeast
    Nature (09 July 2008)
    by Eugenio Mancera, Richard Bourgon, Alessandro Brozzi, Wolfgang Huber, Lars M Steinmetz
    posted to yeast recombination by djkt on 2008-07-23 23:06:09 as **
  • Population Genomic Analysis of Strain Variation in Leptospirillum Group II Bacteria Involved in Acid Mine Drainage Formation
    PLoS Biology, Vol. 6, No. 7. (1 July 2008), e177.
    by Sheri L Simmons, Genevieve Dibartolo, Vincent J Denef, Daniela S Goltsman, Michael P Thelen, Jillian F Banfield
    posted to popgen microbes metagenomics by djkt on 2008-07-23 03:21:12 as ** along with 1 group iSEEM
  • Relationship of Pax6 Activity Levels to the Extent of Eye Development in the Mouse, Mus musculus
    Genetics, Vol. 179, No. 3. (1 July 2008), pp. 1345-1355.
    by Jack Favor, Christian J Gloeckner, Angelika Neuhauser-Klaus, Walter Pretsch, Rodica Sandulache, Simon Saule, Irmgard Zaus
    posted to pax6 development by djkt on 2008-07-22 04:34:38 as **
  • On correcting the overestimation of the permutation based false discovery rate estimator.
    Bioinformatics (Oxford, England) (23 June 2008)
    by Shuo Jiao, Shunpu Zhang
    posted to mtp by djkt on 2008-07-19 17:16:56 as ** along with 1 person shigepong
  • The Ascent of the Abundant: How Mutational Networks Constrain Evolution
    PLoS Comput Biol, Vol. 4, No. 7. (18 July 2008), e1000110.
    by Matthew C Cowperthwaite, Evan P Economo, William R Harcombe, Eric L Miller, Lauren A Meyers
    posted to rna evolution by djkt on 2008-07-19 17:15:44 as ** along with 3 people zwang friendpine Ema
  • Dynamics of Genome Rearrangement in Bacterial Populations
    PLoS Genet, Vol. 4, No. 7. (18 July 2008), e1000128.
    by Aaron E Darling, István Miklós, Mark A Ragan
    posted to microbes evolution chromosome by djkt on 2008-07-19 17:13:45 as ** along with 2 people jjray Ema
  • Coexpression of Linked Genes in Mammalian Genomes Is Generally Disadvantageous
    Mol Biol Evol, Vol. 25, No. 8. (1 August 2008), pp. 1555-1565.
    by Ben-Yang Liao, Jianzhi Zhang
    posted to expression evolution chromosome by djkt on 2008-07-18 21:09:16 as ** along with 1 person aprasad
  • DNA methylation and structural and functional bimodality of vertebrate promoters.
    Molecular biology and evolution, Vol. 25, No. 8. (August 2008), pp. 1602-1608.
    by N Elango, SV Yi
    posted to tf expression evolution epigenetics by djkt on 2008-07-18 21:07:58 as **
  • Spatial and temporal heterogeneity in nucleotide sequence evolution.
    Molecular biology and evolution, Vol. 25, No. 8. (August 2008), pp. 1683-1694.
    by S Whelan
    posted to msa molclock evolution conservation by djkt on 2008-07-18 21:05:56 as **
  • Taxonomic distribution of large DNA viruses in the sea
    Genome Biology, Vol. 9, No. 7. (2008)
    by Adam Monier, Jean M Claverie, Hiroyuki Ogata
    posted to virus microbes metagenomics by djkt on 2008-07-17 23:47:08 as ** along with 1 person and 1 group neils iSEEM
  • The Recombinational Anatomy of a Mouse Chromosome
    PLoS Genet, Vol. 4, No. 7. (11 July 2008), e1000119.
    by Kenneth Paigen, Jin P Szatkiewicz, Kathryn Sawyer, Nicole Leahy, Emil D Parvanov, Siemon H Ng, Joel H Graber, Karl W Broman, Petko M Petkov
    posted to rodents recombination by djkt on 2008-07-17 23:40:24 as **
  • Evolution of Evolvability in Gene Regulatory Networks
    PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000112.
    by Anton Crombach, Paulien Hogeweg
    posted to sysbio expression evolution by djkt on 2008-07-17 23:34:58 as ** along with 6 people and 1 group erel10 dquest Stew dlobo bootsy Ema GEB
  • Bayesian Survival Analysis in Genetic Association Studies.
    Bioinformatics (Oxford, England) (9 July 2008)
    by Ioanna Tachmazidou, Toby Andrew, Claudio J J Verzilli, Michael R R Johnson, Maria De D Iorio
    posted to popgen association by djkt on 2008-07-17 17:59:31 as ** along with 1 person jyuh
  • Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution
    Cell, Vol. 134, No. 1. (11 July 2008), pp. 25-36.
    by Sean B Carroll
    posted to review evolution development by djkt on 2008-07-17 17:50:16 as ** along with 3 people icq242500260 Stew dchughes
  • Confounding between recombination and selection, and the Ped/Pop method for detecting selection
    Genome Res. (10 July 2008), gr.067181.107.
    by Paul F O'Reilly, Ewan Birney, David J Balding
    posted to selection recombination popgen by djkt on 2008-07-17 17:37:04 as **
  • Tracing Sub-Structure in the European American Population with PCA-Informative Markers
    PLoS Genet, Vol. 4, No. 7. (4 July 2008), e1000114.
    by Peristera Paschou, Petros Drineas, Jamey Lewis, Caroline M Nievergelt, Deborah A Nickerson, Joshua D Smith, Paul M Ridker, Daniel I Chasman, Ronald M Krauss, Elad Ziv
    posted to popgen human evolution association by djkt on 2008-07-07 17:04:43 as **
  • Pervasive and Persistent Redundancy among Duplicated Genes in Yeast
    PLoS Genet, Vol. 4, No. 7. (4 July 2008), e1000113.
    by Jedediah E Dean, Jerel C Davis, Ronald W Davis, Dmitri A Petrov
    posted to yeast evolution duplication by djkt on 2008-07-07 17:02:05 as ** along with 1 person bpcusack
  • Phylogenetic Signal in the Eukaryotic Tree of Life
    Science, Vol. 321, No. 5885. (4 July 2008), pp. 121-123.
    by Michael J Sanderson
    posted to phylogenetics by djkt on 2008-07-06 19:00:16 as ** along with 6 people and 1 group aprasad stajich gulsacan dchughes marck caseybrown Berkeley Mycology
  • Revealing the architecture of gene regulation: the promise of eQTL studies
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Yoav Gilad, Scott A Rifkin, Jonathan K Pritchard
    posted to qtl expression by djkt on 2008-07-06 18:45:57 as **
  • Asymmetric histone modifications between the original and derived loci of human segmental duplications
    Genome Biology, Vol. 9, No. 7. (2008)
    by Deyou Zheng
    posted to human evolution epigenetics duplication by djkt on 2008-07-03 22:34:14 as ** along with 1 person bpcusack
  • Automated mapping of large-scale chromatin structure in ENCODE.
    Bioinformatics (Oxford, England) (30 June 2008)
    by Heng Lian, William A A Thompson, Robert Thurman, John A A Stamatoyannopoulos, William Stafford S Noble, Charles E E Lawrence
    posted to epigenetics annotation by djkt on 2008-07-03 22:27:20 as ** along with 1 person aprasad
  • Dissecting direct reprogramming through integrative genomic analysis
    Nature (28 May 2008)
    by Tarjei S Mikkelsen, Jacob Hanna, Xiaolan Zhang, Manching Ku, Marius Wernig, Patrick Schorderet, Bradley E Bernstein, Rudolf Jaenisch, Eric S Lander, Alexander Meissner
    posted to stemcells expression epigenetics by djkt on 2008-07-02 22:32:26 as ** along with 3 people inesdesantiago jasonflannick zwang
  • Identification and analysis of ancestral hominoid transcriptome inferred from cross-species transcript and processed pseudogene comparisons
    Genome Res., Vol. 18, No. 7. (1 July 2008), pp. 1163-1170.
    by Yao-Ting Huang, Feng-Chi Chen, Chiuan-Jung Chen, Hsin-Liang Chen, Trees-Juen Chuang
    posted to splicing primates expression evolution duplication by djkt on 2008-07-01 19:27:10 as ** along with 1 person dchughes
  • Two strategies for gene regulation by promoter nucleosomes
    Genome Res. (30 April 2008), gr.076059.108.
    by Itay Tirosh, Naama Barkai
    posted to yeast expression chromatin by djkt on 2008-07-01 19:20:59 as ** along with 8 people inesdesantiago dchughes aalibes fpattyn vega emptyhb roys nklee
  • Evolutionary dynamics of segmental duplications from human Y-chromosomal euchromatin/heterochromatin transition regions
    Genome Res. (12 June 2008), gr.076711.108.
    by Stefan Kirsch, Claudia Munch, Zhaoshi Jiang, Ze Cheng, Lin Chen, Christiane Batz, Evan E Eichler, Werner Schempp
    posted to evolution duplication by djkt on 2008-07-01 19:18:35 as ** along with 1 person diamantis
  • A diversity profile of the human skin microbiota.
    Genome research (23 May 2008)
    by Elizabeth A A Grice, Heidi H H Kong, Gabriel Renaud, Alice C C Young, , Gerard G G Bouffard, Robert W W Blakesley, Tyra G G Wolfsberg, Maria L L Turner, Julia A A Segre
    posted to microbes metagenomics human by djkt on 2008-07-01 19:18:08 as ** along with 3 people and 1 group sconlan caseybrown aprasad iSEEM
  • Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals
    Genome Res., Vol. 18, No. 7. (1 July 2008), pp. 1020-1029.
    by Ines Hellmann, Yuan Mang, Zhiping Gu, Peter Li, de La, Andrew G Clark, Rasmus Nielsen
    posted to sequencing popgen human by djkt on 2008-07-01 19:13:57 as ** along with 4 people serdarbozdag balicea Neeperando APRegier
  • Mouse segmental duplication and copy number variation
    Nature Genetics, Vol. 40, No. 7. (22 May 2008), pp. 909-914.
    by Xinwei She, Ze Cheng, Sebastian Zöllner, Deanna M Church, Evan E Eichler
    posted to variation rodents duplication by djkt on 2008-06-27 20:02:36 as ** along with 1 person dchughes
  • Genomic surveys by methylation-sensitive SNP analysis identify sequence-dependent allele-specific DNA methylation.
    Nature genetics (22 June 2008)
    by Kristi Kerkel, Alexandra Spadola, Eric Yuan, Jolanta Kosek, Le Jiang, Eldad Hod, Kerry Li, Vundavalli V V Murty, Nicole Schupf, Eric Vilain, Mitzi Morris, Fatemeh Haghighi, Benjamin Tycko
    posted to snps popgen epigenetics by djkt on 2008-06-27 20:01:22 as ** along with 2 people oelemento rschulz
  • Combinatorial patterns of histone acetylations and methylations in the human genome
    Nat Genet, Vol. 40, No. 7. (July 2008), pp. 897-903.
    by Zhibin Wang, Chongzhi Zang, Jeffrey A Rosenfeld, Dustin E Schones, Artem Barski, Suresh Cuddapah, Kairong Cui, Tae-Young Roh, Weiqun Peng, Michael Q Zhang, Keji Zhao
    posted to human expression epigenetics by djkt on 2008-06-27 19:58:40 as ** along with 5 people inesdesantiago bpcusack caseybrown kengg kambiz
  • Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks.
    Nature genetics (15 June 2008)
    by Jun Zhu, Bin Zhang, Erin N N Smith, Becky Drees, Rachel B B Brem, Leonid Kruglyak, Roger E E Bumgarner, Eric E E Schadt
    posted to yeast sysbio by djkt on 2008-06-27 19:56:53 as ** along with 9 people caseybrown marck roys jyuh realzhang kengg tmmurali ptrobajo maralena
  • Estimating coverage and power for genetic association studies using near-complete variation data
    Nat Genet, Vol. 40, No. 7. (July 2008), pp. 841-843.
    by Tushar R Bhangale, Mark J Rieder, Deborah A Nickerson
    posted to snps power popgen association by djkt on 2008-06-27 19:53:12 as ** along with 2 people jyuh caseybrown
  • Global Mapping of DNA Methylation in Mouse Promoters Reveals Epigenetic Reprogramming of Pluripotency Genes
    PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000116.
    by Cassandra R Farthing, Gabriella Ficz, Ray K Ng, Chun-Fung Chan, Simon Andrews, Wendy Dean, Myriam Hemberger, Wolf Reik
    posted to stemcells epigenetics by djkt on 2008-06-27 19:50:49 as ** along with 2 people inesdesantiago Schmidtc
  • Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation
    PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000106.
    by Emily E Hare, Brant K Peterson, Venky N Iyer, Rudolf Meier, Michael B Eisen
    posted to tf fly expression evolution by djkt on 2008-06-27 19:47:07 as ** along with 5 people and 2 groups emptyhb pradiptaray cisevol caseybrown stajich cis-regulatory-evolution Berkeley Mycology
  • Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
    Nature (18 May 2008)
    by Brian T Wilhelm, Samuel Marguerat, Stephen Watt, Falk Schubert, Valerie Wood, Ian Goodhead, Christopher J Penkett, Jane Rogers, Jürg Bähler
    posted to yeast sequencing expression by djkt on 2008-06-25 22:00:06 as ** along with 5 people and 1 group myourshaw jyuh caseybrown GeeSharpMinor jonathanjacobs Molecular Biology
  • Tuning in to the signals: noncoding sequence conservation in vertebrate genomes
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Greg Elgar, Tanya Vavouri
    posted to conservation by djkt on 2008-06-22 18:10:45 as ** along with 2 people dchughes nklee
  • An Evolutionarily Conserved Sexual Signature in the Primate Brain
    PLoS Genet, Vol. 4, No. 6. (20 June 2008), e1000100.
    by Björn Reinius, Peter Saetre, Jennifer A Leonard, Ran Blekhman, Roxana Merino-Martinez, Yoav Gilad, Elena Jazin
    posted to primates expression divergence by djkt on 2008-06-21 01:17:33 as ** along with 1 person kambiz
  • A Drastic Reduction in the Life Span of Cystatin C L68Q Carriers Due to Life-Style Changes during the Last Two Centuries
    PLoS Genet, Vol. 4, No. 6. (20 June 2008), e1000099.
    by Astridur Palsdottir, Agnar Helgason, Snaebjorn Palsson, Hans T Bjornsson, Birkir T Bragason, Solveig Gretarsdottir, Unnur Thorsteinsdottir, Elias Olafsson, Kari Stefansson
    posted to popgen evolution ecology by djkt on 2008-06-21 01:14:54 as ** along with 1 person Schmidtc
  • Evaluating Statistical Methods Using Plasmode Data Sets in the Age of Massive Public Databases: An Illustration Using False Discovery Rates
    PLoS Genet, Vol. 4, No. 6. (20 June 2008), e1000098.
    by Gary L Gadbury, Qinfang Xiang, Lin Yang, Stephen Barnes, Grier P Page, David B Allison
    posted to mtp by djkt on 2008-06-21 01:13:25 as ** along with 1 person jyuh
  • Evolution of Mammals and Their Gut Microbes
    Science, Vol. 320, No. 5883. (20 June 2008), pp. 1647-1651.
    by Ruth E Ley, Micah Hamady, Catherine Lozupone, Peter J Turnbaugh, Rob R Ramey, Stephen J Bircher, Michael L Schlegel, Tammy A Tucker, Mark D Schrenzel, Rob Knight, Jeffrey I Gordon
    posted to microbes metagenomics mammals evolution by djkt on 2008-06-20 16:34:54 as ** along with 3 people and 1 group lp2 dchughes dinnes iSEEM
  • Proliferating Cells Express mRNAs with Shortened 3' Untranslated Regions and Fewer MicroRNA Target Sites
    Science, Vol. 320, No. 5883. (20 June 2008), pp. 1643-1647.
    by Rickard Sandberg, Joel R Neilson, Arup Sarma, Phillip A Sharp, Christopher B Burge
    posted to rna expression by djkt on 2008-06-20 16:34:08 as ** along with 5 people faion dchughes emptyhb bootsy lisa1
  • Natural Selection Shapes Genome-Wide Patterns of Copy-Number Polymorphism in Drosophila melanogaster
    Science, Vol. 320, No. 5883. (20 June 2008), pp. 1629-1631.
    by JJ Emerson, Margarida Cardoso-Moreira, Justin O Borevitz, Manyuan Long
    posted to sv selection popgen fly evolution by djkt on 2008-06-20 16:21:25 as ** along with 7 people popgen emptyhb Neeperando balicea APRegier skumagai dinnes
  • Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis
    Science, Vol. 320, No. 5883. (20 June 2008), pp. 1632-1635.
    by Ari Loytynoja, Nick Goldman
    posted to phylogenetics msa evolution alignment by djkt on 2008-06-20 16:18:18 as ** along with 16 people and 1 group bpcusack bmaust gulsacan Schmidtc bpb zwang aprasad imtechnology marck ArtemPankin gjuggler hpaces dinnes chad_davis jago phoenixzxl Khavkin's lab
  • Pervasive positive selection on duplicated and non duplicated vertebrate protein coding genes
    Genome Res. (18 June 2008), gr.076992.108.
    by Romain Studer, Laurent Duret, Simon Penel, Marc Robinson-Rechavi
    posted to selection proteins duplication by djkt on 2008-06-19 17:39:03 as **
  • From genes to functional classes in the study of biological systems
    BMC Bioinformatics, Vol. 8 (03 April 2007), 114.
    by Fatima Al-Shahrour, Leonardo Arbiza, Hernan Dopazo, Jaime Huerta-Cepas, Pablo Minguez, David Montaner, Joaquin Dopazo
    posted to selection go by djkt on 2008-06-19 17:27:56 as ** along with 5 people and 1 group jfr Sharpshoot ealloza ajw Garamonfok BioinfoCIPF
  • A simple method for calculating the statistical power for detecting a QTL located in a marker interval
    Heredity, Vol. aop, No. current.
    by Z Hu, S Xu
    posted to qtl power by djkt on 2008-06-18 19:04:25 as **
  • Use and misuse of the gene ontology annotations.
    Nature reviews. Genetics (13 May 2008)
    by Seung Yon Rhee, Valerie Wood, Kara Dolinski, Sorin Draghici
    posted to go annotation by djkt on 2008-06-18 19:03:28 as ** along with 18 people and 1 group marck capitall realzhang gjuggler A_Olympia fpattyn cmzmasek renatomilani giovenko tmmurali cabbagesofdoom ptrobajo RamuAnandakrishnan roys carlk mariakmejia aheilbut jyuh logics of knowledge
  • Recracking the nucleosome positioning code
    by Mark Segal
    posted to epigenetics by djkt on 2008-06-18 19:01:59 as **
  • Recurrent Deletion and Gene Presence/Absence Polymorphism: Telomere Dynamics Dominate Evolution at the Tip of 3L in Drosophila melanogaster and D. simulans
    Genetics, Vol. 179, No. 2. (1 June 2008), pp. 1021-1027.
    by Andrew D Kern, David J Begun
    posted to snps recombination indel fly by djkt on 2008-06-18 18:53:42 as **
  • Levels of Selection on Threshold Characters
    Genetics, Vol. 179, No. 2. (1 June 2008), pp. 899-905.
    by Jacob A Moorad, Timothy A Linksvayer
    posted to selection ptmass by djkt on 2008-06-18 18:50:03 as **
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