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dimka's alignment [21 articles]

当前文献位于 dimka's 文献库 标签分类为 alignment. You can also see everyone's alignment.
  • Conservation of amino acids into multiple alignments involved in pairwise interactions in three-dimensional protein structures.
    J Bioinform Comput Biol, Vol. 1, No. 3. (October 2003), pp. 505-520.
    by M Errami, C Geourjon, G Deléage
    posted to alignment structure by dimka on 2008-03-09 03:50:41 as **
  • Matt: Local Flexibility Aids Protein Multiple Structure Alignment.
    PLoS Comput Biol, Vol. 4, No. 1. (11 January 2008)
    by Matthew Menke, Bonnie Berger, Lenore Cowen
    posted to alignment multiple software structure by dimka on 2008-01-17 17:47:22 as ** along with 3 people sebk marti carlk
  • MALIDUP: A database of manually constructed structure alignments for duplicated domain pairs
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Hua Cheng, Bong-Hyun Kim, Nick V Grishin
    posted to alignment database multiple structure by dimka on 2007-10-15 19:27:18 as **
  • CAALIGN: a program for pairwise and multiple protein structure alignment
    Acta Crystallographica Section D Biological Crystallography, No. D63. (2007), pp. 514-525.
    by TJ Oldfield
    posted to alignment multiple structure by dimka on 2007-03-24 17:57:15 as **
  • A structural alignment kernel for protein structures A structural alignment kernel for protein structures.
    Bioinformatics (18 January 2007)
    by Jian Qiu, Martial Hue, Asa Ben-Hur, Jean-Philippe P Vert, William Stafford S Noble
    posted to structure mammoth alignment by dimka on 2007-01-25 12:49:08 as **
  • StructSorter: a method for continuously updating a comprehensive protein structure alignment database.
    J Chem Inf Model, Vol. 46, No. 4. (g 2006), pp. 1871-1876.
    by B Palmer, JF Danzer, K Hambly, DA Debe
    posted to alignment database pairwise structure by dimka on 2006-09-21 18:31:26 as **
  • THESEUS: maximum likelihood superpositioning and analysis of macromolecular structures
    Bioinformatics, Vol. 22, No. 17. (1 September 2006), pp. 2171-2172.
    by Douglas L Theobald, Deborah S Wuttke
    posted to alignment multiple protein structure by dimka on 2006-09-12 19:48:26 as ** along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
  • VISTAL--a new 2D visualization tool of protein 3D structural alignments
    Bioinformatics, Vol. 22, No. 17. (1 September 2006), pp. 2166-2167.
    by Rachel Kolodny, Barry Honig
    posted to alignment structure tool visualization by dimka on 2006-09-12 19:45:10 as read along with 2 people msierk choonpeng
  • Approximation of protein structure for fast similarity measures.
    J Comput Biol, Vol. 11, No. 2-3. (2004), pp. 299-317.
    by I Lotan, F Schwarzer
    posted to alignment protein structure by dimka on 2006-05-30 21:50:56 as **
  • Progressive combinatorial algorithm for multiple structural alignments: application to distantly related proteins.
    Proteins, Vol. 55, No. 2. (1 May 2004), pp. 436-454.
    by ME Ochagavía, S Wodak
    posted to alignment multiple structure by dimka on 2006-05-03 05:29:33 as **
  • Comparing programs for rigid-body multiple structural superposition of proteins.
    Proteins (27 March 2006)
    by Anthony D D Hill, Peter J J Reilly
    posted to alignment analysis multiple optimize structure by dimka on 2006-04-27 21:28:01 as ** along with 1 person papatonyhill
  • Multiple structural alignment by secondary structures: algorithm and applications.
    Protein Sci, Vol. 12, No. 11. (November 2003), pp. 2492-2507.
    by O Dror, H Benyamini, R Nussinov, HJ Wolfson
    posted to alignment multiple structure by dimka on 2006-03-29 23:25:50 as ** along with 2 people ziquje analogAI
  • MAMMOTH (Matching molecular models obtained from theory): An automated method for model comparison
    Protein Sci, Vol. 11, No. 11. (1 November 2002), pp. 2606-2621.
    by Angel R Ortiz, Charlie E Strauss, Osvaldo Olmea
    posted to algorithm alignment conformation databases folding mammoth models molecular protein secondary simulation software statistics structure by dimka on 2006-03-28 23:52:07 as read along with 6 people and 2 groups ana iakes jwm analogAI sebk tjimenez structural_bioinformatics Bioinformatics
  • Multiple Alignment of protein structures and sequences for VMD
    Bioinformatics, Vol. 22, No. 4. (15 February 2006), pp. 504-506.
    by John Eargle, Dan Wright, Zaida Luthey-Schulten
    posted to alignment multiple protein structure by dimka on 2006-02-18 00:24:50 as **** along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • The (beta)gamma subunits of G proteins gate a K(+) channel by pivoted bending of a transmembrane segment.
    Mol Cell, Vol. 10, No. 3. (September 2002), pp. 469-481.
    by T Jin, L Peng, T Mirshahi, T Rohacs, KW Chan, R Sanchez, DE Logothetis
    posted to alignment channel fusion glycine gtp-binding heterotrimeric mutagenesis oocyte proline protein recombinant sequence structure subunits by dimka on 2005-11-23 19:42:19 as **
  • An integrated approach to the analysis and modeling of protein sequences and structures. I. Protein structural alignment and a quantitative measure for protein structural distance.
    J Mol Biol, Vol. 301, No. 3. (18 August 2000), pp. 665-678.
    by AS Yang, B Honig
    posted to alignment protein review structure by dimka on 2005-11-16 20:29:42 as ** along with 2 people and 2 groups ana analogAI structural_bioinformatics Bioinformatics
  • A new progressive-iterative algorithm for multiple structure alignment
    Bioinformatics, Vol. 21, No. 15. (1 August 2005), pp. 3255-3263.
    by Dmitry Lupyan, Alejandra Leo-Macias, Angel R Ortiz
    posted to alignment multiple structure by dimka on 2005-09-23 20:56:08 as read along with 3 people and 2 groups ana analogAI insectopalo structural_bioinformatics Bioinformatics
  • An analysis of core deformations in protein superfamilies.
    Biophys J, Vol. 88, No. 2. (February 2005), pp. 1291-1299.
    by A Leo-Macias, P Lopez-Romero, D Lupyan, D Zerbino, AR Ortiz
    posted to alignment analysis scop structure superfamily by dimka on 2005-09-14 14:58:27 as read along with 7 people and 2 groups apaydin ana barry lna aqeel insectopalo edvin structural_bioinformatics Bioinformatics
  • Core deformations in protein families: a physical perspective.
    Biophys Chem, Vol. 115, No. 2-3. (1 April 2005), pp. 125-128.
    by A Leo-Macias, P Lopez-Romero, D Lupyan, D Zerbino, AR Ortiz
    posted to alignment analysis scop structure by dimka on 2005-08-22 23:04:29 as read along with 3 people and 2 groups ana lna edvin structural_bioinformatics Bioinformatics
  • A new progressive-iterative algorithm for multiple structure alignment.
    Bioinformatics (7 June 2005)
    by Dmitry Lupyan, Alejandra Leo-Macias, Angel R R Ortiz
    posted to alignment automatic bioinformatics classification computation fast multiple protein_structure structure by dimka on 2005-08-22 18:54:53 as read along with 4 people and 4 groups sebk ana marcius tjimenez structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • Specificity determinants in phosphoinositide dephosphorylation: crystal structure of an archetypal inositol polyphosphate 5-phosphatase
    Cell, Vol. 105, No. 3. (2001), pp. 379-389.
    by Y Tsujishita, S Guo, LE Stolz, JD York, JH Hurley
    posted to phosphorylation protein quaternary recombinant specificity structure substrate alignment binding calcium catalytic cloning conformation crystallography domain enzyme folding humans hydrolase inhibitor inositol models molecular monoester mutation nerve phosphate phosphoric by dimka on 2005-06-06 17:48:05 as **
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