GRASP2: visualization, surface properties, and electrostatics of macromolecular structures and sequences.

by: D Petrey, B Honig

Methods in enzymology, Vol. 374 (2003), pp. 492-509.

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摘要

The widespread use of the original version of GRASP revealed the importance of the visualization of physicochemical and structural properties on the molecular surface. This chapter describes a new version of GRASP that contains many new capabilities. In terms of analysis tools, the most notable new features are sequence and structure analysis and alignment tools and the graphical integration of sequence and structural information. Not all the new GRASP2 could be described here and more capabilities are continually being added. An on-line manual, details on obtaining the software, and technical notes about the program and the Troll software library can be found at the Honig laboratory Web site (http://trantor.bioc.columbia.edu).

@article{citeulike:3365392, abstract = {The widespread use of the original version of GRASP revealed the importance of the visualization of physicochemical and structural properties on the molecular surface. This chapter describes a new version of GRASP that contains many new capabilities. In terms of analysis tools, the most notable new features are sequence and structure analysis and alignment tools and the graphical integration of sequence and structural information. Not all the new GRASP2 could be described here and more capabilities are continually being added. An on-line manual, details on obtaining the software, and technical notes about the program and the Troll software library can be found at the Honig laboratory Web site (http://trantor.bioc.columbia.edu).}, author = {Petrey, D. and Honig, B. }, citeulike-article-id = {3365392}, doi = {http://dx.doi.org/10.1016/S0076-6879(03)74021-X}, issn = {0076-6879}, journal = {Methods in enzymology}, keywords = {electrostatic, grasp, pb, poisson-bolzmann}, pages = {492--509}, posted-at = {2008-10-02 07:01:00}, priority = {2}, title = {GRASP2: visualization, surface properties, and electrostatics of macromolecular structures and sequences.}, url = {http://dx.doi.org/10.1016/S0076-6879(03)74021-X}, volume = {374}, year = {2003} }

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TY - JOUR ID - citeulike:3365392 L3 - citeulike-article-id:3365392 N2 - The widespread use of the original version of GRASP revealed the importance of the visualization of physicochemical and structural properties on the molecular surface. This chapter describes a new version of GRASP that contains many new capabilities. In terms of analysis tools, the most notable new features are sequence and structure analysis and alignment tools and the graphical integration of sequence and structural information. Not all the new GRASP2 could be described here and more capabilities are continually being added. An on-line manual, details on obtaining the software, and technical notes about the program and the Troll software library can be found at the Honig laboratory Web site (http://trantor.bioc.columbia.edu). JF - Methods in enzymology SN - 0076-6879 EP - 509 TI - GRASP2: visualization, surface properties, and electrostatics of macromolecular structures and sequences. VL - 374 SP - 492 KW - electrostatic KW - grasp KW - pb KW - poisson-bolzmann AU - Petrey, D AU - Honig, B PY - 2003/// UR - http://dx.doi.org/10.1016/S0076-6879(03)74021-X ER -

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