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diamantis's library [56 articles]

最近录入 diamantis's 文献库.
  • The evolutionary genetics of adaptation: a simulation study
    Genetics Research, Vol. 74, No. 03. (2000), pp. 207-214.
    by Allen
    posted to population_genetics geometric_model fisher adaptation by diamantis on 2008-11-19 18:09:50 as ***
  • ADAPTATION AND THE COST OF COMPLEXITY
    Evolution, Vol. 54, No. 1. (2000), pp. 13-20.
    by Orr
    posted to population_genetics geometric_model fisher evolution adaptation by diamantis on 2008-11-19 17:54:41 as ***
  • The Population Genetics of Adaptation: The Distribution of Factors Fixed during Adaptive Evolution
    Evolution, Vol. 52, No. 4. (1998), pp. 935-949.
    by Allen H Orr
    posted to population_genetics geometric_model fisher adaptation by diamantis on 2008-11-19 17:50:50 as *** along with 5 people and 1 group stevanspringer ryang balicea cmm shoshin FAB-lab
  • The distribution of fitness effects among beneficial mutations in Fisher's geometric model of adaptation.
    J Theor Biol (27 June 2005)
    by H Allen A Orr
    posted to population_genetics mutation geometric_model fisher adaptation by diamantis on 2008-11-19 17:44:43 as read along with 3 people and 1 group stevanspringer ryang darbuthnott FAB-lab
  • Compensatory Nearly Neutral Mutations: Selection without Adaptation
    Journal of Theoretical Biology, Vol. 182, No. 3. (07 October 1996), pp. 303-309.
    by D Hartl
    posted to population_genetics mutation geometric_model fisher adaptation by diamantis on 2008-11-19 17:41:04 as read
  • FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments
    Nucleic Acids Research, Vol. 35, No. Web Server issue. (2007), pp. W91-W96.
    by Fátima Al-Shahrour, Pablo Minguez, Joaquín Tárraga, Ignacio Medina, Eva Alloza, David Montaner, Joaquín Dopazo
    posted to go genome gene_ontology by diamantis on 2008-11-13 19:07:31 as read
  • FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes
    Bioinformatics, Vol. 20, No. 4. (1 March 2004), pp. 578-580.
    by Fatima Al-Shahrour, Ramon Diaz-Uriarte, Joaquin Dopazo
    posted to go genome gene_ontology by diamantis on 2008-11-13 18:40:58 as read along with 6 people aalibes RMGraze macavity1g Garamonfok ellakat sgoetz
  • Ontological analysis of gene expression data: current tools, limitations, and open problems.
    Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3587-3595.
    by P Khatri, S Drăghici
    posted to go genome gene_ontology by diamantis on 2008-11-12 02:42:45 as ** along with 10 people Cortel dragonrez macavity1g Garamonfok sgoetz heliopais kristen yggdrasil ellakat marck
  • Ontologizer 2.0 - A Multifunctional Tool for GO Term Enrichment Analysis and Data Exploration.
    Bioinformatics (Oxford, England) (29 May 2008)
    by Sebastian Bauer, Steffen Grossmann, Martin Vingron, Peter N N Robinson
    posted to go gene_ontology by diamantis on 2008-11-12 02:33:45 as ** along with 5 people cmzmasek dullhunk barriot jyuh kluck
  • Evolution in four dimensions : genetic, epigenetic, behavioral, and symbolic variation in the history of life
    (2006)
    by Eva Jablonka, Marion J Lamb, Anna Zeligowski
    posted to selection levels inheritance evolution epigenetics behaviour by diamantis on 2008-11-05 19:36:42 as read
  • Alu and LINE1 Distributions in the Human Chromosomes: Evidence of Global Genomic Organization Expressed in the Form of Power Laws
    Mol Biol Evol, Vol. 24, No. 11. (1 November 2007), pp. 2385-2399.
    by Diamantis Sellis, Astero Provata, Yannis Almirantis
    posted to tes scaling scale-free retroelement power-law mechanism line genome genes gene evolution alu by diamantis on 2008-11-05 00:24:22 as read along with 2 people and 1 group dchughes cisevol BergmanLab
  • An Exponential Core in the Heart of the Yeast Protein Interaction Network
    Molecular Biology and Evolution, Vol. 22, No. 3. (March 2005), pp. 421-425.
    by Jose B Pereira-Leal, Benjamin Audit, Jose M Peregrin-Alvarez, Christos A Ouzounis
    posted to scale-free protein-protein power-law networks mechanism interactions interaction-network genome gene by diamantis on 2008-11-01 00:16:26 as ** along with 2 people and 1 group wilbur lfriedl kdl
  • Evolution of the yeast protein interaction network
    Proceedings of the National Academy of Sciences, Vol. 100, No. 22. (28 October 2003), pp. 12820-12824.
    by Hong Qin, Henry H Lu, Wei B Wu, Wen-Hsiung Li
    posted to yeast scale-free protein-protein power-law mechanism interactions interaction-network genome gene evolution eukaryots by diamantis on 2008-11-01 00:13:52 as ** along with 2 people davidecellai friendpine
  • Preferential Attachment in the Protein Network Evolution
    Physical Review Letters, Vol. 91, No. 13. (2003), 138701.
    by Eli Eisenberg, Erez Y Levanon
    posted to scale-free protein-protein power-law mechanism interactions interaction-network genome gene by diamantis on 2008-11-01 00:11:45 as **
  • Effect of sampling on topology predictions of protein-protein interaction networks
    Nature Biotechnology, Vol. 23, No. 7. (07 July 2005), pp. 839-844.
    by Jing-Dong J Han, Denis Dupuy, Nicolas Bertin, Michael E Cusick, Marc Vidal
    posted to scaling scale-free protein-protein power-law networks molecular interaction-network genome by diamantis on 2008-10-31 20:31:49 as read along with 13 people cerca snuppepuppan kuhn rabbat gurkanbebek koller eukfn mikaelhuss grahamc cjeans iris_2001 paolomarcatili carlk
  • Evolutionary rate depends on number of protein-protein interactions independently of gene expression level.
    BMC Evol Biol, Vol. 4, No. 1. (27 May 2004)
    by HB Fraser, AE Hirsh
    posted to protein-protein interactions interaction-network genome expression by diamantis on 2008-10-29 00:12:40 as ** along with 1 person bjorns
  • Evolutionary rate depends on number of protein-protein interactions independently of gene expression level: response.
    BMC Evol Biol, Vol. 4 (1 June 2004)
    by JD Bloom, C Adami
    posted to protein-protein interactions interaction-network genome expression by diamantis on 2008-10-29 00:11:53 as ** along with 1 person bjorns
  • Unequal evolutionary conservation of human protein interactions in interologous networks
    Genome Biology, Vol. 8 (29 May 2007), R95.
    by Kevin R Brown, Igor Jurisica
    posted to protein-protein interactions interaction-network htp genome database by diamantis on 2008-10-29 00:05:48 as ** along with 3 people and 1 group grahamc zwang winterschlaefer ParkinsonLab_at_MaRS
  • Online Predicted Human Interaction Database
    Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 2076-2082.
    by Kevin R Brown, Igor Jurisica
    posted to protein-protein interactions interaction-network htp genome database by diamantis on 2008-10-29 00:04:55 as ** along with 1 person cerca
  • Network-based global inference of human disease genes
    Mol Syst Biol, Vol. 4 (6 May 2008)
    by Xuebing Wu, Rui Jiang, Michael Q Zhang, Shao Li
    posted to networks interactions interaction-network genome genes disease by diamantis on 2008-10-28 23:26:27 as read along with 9 people tmmurali jfr maralena bootsy biomcgary jyuh zwang ptrobajo Borelli
  • Evolutionary and Physiological Importance of Hub Proteins
    PLoS Computational Biology, Vol. 2, No. 7. (1 July 2006), e88.
    by Nizar N Batada, Laurence D Hurst, Mike Tyers
    posted to protein-protein lethality interactions interaction-network genome genes evolution comparative centrality by diamantis on 2008-10-28 18:10:38 as read along with 7 people davidecellai phoenixzxl aswin IbnBio lpfernandes Evangelia Ema
  • The Structure and Function of Complex Networks
    SIAM Review, Vol. 45, No. 2. (2003), pp. 167-256.
    by MEJ Newman
    posted to networks interactions interaction-network complexity by diamantis on 2008-10-28 18:07:58 as ** along with 21 people and 2 groups pcarbo matteodellamico eyliu afragop merazzle muraken lshaw jaspervoskuilen timflutre gcalda gi0rgi0ne rcrane shikin nolodie stefanoallesina eustatic skumagai ilkert rrbarb ebalp Borelli Complex_Real_Networks EntrepreneurialRisks
  • NETWORK BIOLOGY: UNDERSTANDING THE CELL'S FUNCTIONAL ORGANIZATION
    Nat Rev Genet, Vol. 5, No. 2. (February 2004), pp. 101-113.
    by Albert-Laszlo Barabasi, Zoltan N Oltvai
    posted to scaling scale-free protein-protein power-law networks modularity interactions interaction-network genome genes evolution by diamantis on 2008-10-28 17:58:55 as ** along with 10 people and 1 group okarsligil bayesian tny mmt grahamc mirzazadeh lpfernandes karfunkel vietanh0 nolodie Bioinformatics
  • Rate of protein evolution versus fitness effect of gene deletion.
    Mol Biol Evol, Vol. 20, No. 5. (May 2003), pp. 772-774.
    by J Yang, Z Gu, WH Li
    posted to protein-protein interactions interaction-network genome expression evolution by diamantis on 2008-10-28 17:54:51 as ** along with 2 people and 1 group bjorns penka Nie
  • Genomic function: Rate of evolution and gene dispensability.
    Nature, Vol. 421, No. 6922. (30 January 2003)
    by C Pál, B Papp, LD Hurst
    posted to rate protein-protein interactions interaction-network expression evolution by diamantis on 2008-10-28 17:51:41 as ** along with 1 person bjorns
  • Apparent dependence of protein evolutionary rate on number of interactions is linked to biases in protein-protein interactions data sets.
    BMC Evol Biol, Vol. 3 (2 October 2003)
    by JD Bloom, C Adami
    posted to rate protein-protein interactions interaction-network genome expression by diamantis on 2008-10-28 17:48:12 as ** along with 4 people and 1 group bjorns balajis penka rsantana Nie
  • Gene Loss, Protein Sequence Divergence, Gene Dispensability, Expression Level, and Interactivity Are Correlated in Eukaryotic Evolution -- Krylov et al. 13 (10): 2229 -- Genome Research
    Genome Research, Vol. 13 (2003), pp. 2229-2235.
    by Dmitri M Krylov, Yuri I Wolf, Igor B Rogozin, Eugene V Koonin
    posted to protein-protein loss interactivity interactions interaction-network genome gene expression eukaryots divergence dispensability by diamantis on 2008-10-28 17:44:52 as **
  • Structure and evolution of protein interaction networks: a statistical model for link dynamics and gene duplications.
    BMC Evol Biol, Vol. 4, No. 1. (27 November 2004)
    by J Berg, M Lässig, A Wagner
    posted to protein-protein networks mechanism interactions interaction-network genome by diamantis on 2008-10-28 17:34:58 as ** along with 5 people kaarsinogen phoenixzxl j3xucite timflutre iris_2001
  • Evolutionary conservation of motif constituents in the yeast protein interaction network.
    Nat Genet, Vol. 35, No. 2. (October 2003), pp. 176-179.
    by S Wuchty, ZN Oltvai, AL Barabási
    posted to yeast selection protein-protein interactions interaction-network consercation by diamantis on 2008-10-28 17:30:42 as ** along with 3 people shivaram lyongu niallhaslam
  • Protein complexes and functional modules in molecular networks.
    Proc Natl Acad Sci U S A, Vol. 100, No. 21. (14 October 2003), pp. 12123-12128.
    by V Spirin, LA Mirny
    posted to networks modularity interactions interaction-network genome by diamantis on 2008-10-28 17:29:12 as ** along with 13 people and 4 groups jiny camster kentsis ujh tmmurali dragonrez karfunkel joseph_x_zhou Evangelia grahamc biehl ellakat carlk dbk-lab biophysics HIV_DR bioNetwork_sysBio
  • Community structure in social and biological networks.
    Proc Natl Acad Sci U S A, Vol. 99, No. 12. (11 June 2002), pp. 7821-7826.
    by M Girvan, ME Newman
    posted to networks modularity interactions interaction-network betweenness by diamantis on 2008-10-28 17:28:04 as ** along with 32 people and 4 groups nolodie davidecellai qwermish pridkett korakot mrm rasca jtowle PiersYoung zqshen schaal shivaram yas lyongu herdivineshadow jirlong fwkroon adriandefroment gcalda noby andreacapocci Evangelia marcio Diego_Prada pipkin stefanoallesina verdicchio compbio ellakat ganden chibatching jpbarrette Philosophy_of_Information Blog_and_Wiki_Research GraphVis T_lab
  • A protein interaction map of Drosophila melanogaster.
    Science, Vol. 302, No. 5651. (5 December 2003), pp. 1727-1736.
    by L Giot, JS Bader, C Brouwer, A Chaudhuri, B Kuang, Y Li, YL Hao, CE Ooi, B Godwin, E Vitols, G Vijayadamodar, P Pochart, H Machineni, M Welsh, Y Kong, B Zerhusen, R Malcolm, Z Varrone, A Collis, M Minto, S Burgess, L McDaniel, E Stimpson, F Spriggs, J Williams, K Neurath, N Ioime, M Agee, E Voss, K Furtak, R Renzulli, N Aanensen, S Carrolla, E Bickelhaupt, Y Lazovatsky, A DaSilva, J Zhong, CA Stanyon, RL Finley, KP White, M Braverman, T Jarvie, S Gold, M Leach, J Knight, RA Shimkets, MP McKenna, J Chant, JM Rothberg
    posted to protein-protein modularity melanogaster interactions interaction-network drosophila by diamantis on 2008-10-28 17:26:27 as ** along with 14 people and 2 groups dragonrez shivaram lfriedl nuke2005 lyongu sesejun maryee xico memming eukfn csanford antonkratz carlk cerca kdl WetBiology
  • Modular organization of cellular networks
    Proceedings of the National Academy of Sciences, Vol. 100, No. 3. (4 February 2003), pp. 1128-1133.
    by Alexander W Rives, Timothy Galitski
    posted to protein-protein modularity interactions interaction-network genome by diamantis on 2008-10-28 17:21:32 as ** along with 7 people jiny karfunkel Evangelia stefanoallesina ellakat carlk roys
  • Evidence for dynamically organized modularity in the yeast protein-protein interaction network
    Nature, Vol. 430, No. 6995. (01 July 2004), pp. 88-93.
    by Jing-Dong J Han, Nicolas Bertin, Tong Hao, Debra S Goldberg, Gabriel F Berriz, Lan V Zhang, Denis Dupuy, Albertha JM Walhout, Michael E Cusick, Frederick P Roth, Marc Vidal
    posted to yeast protein-protein modularity interactions interaction-network genome genes by diamantis on 2008-10-28 17:19:55 as ** along with 26 people and 2 groups lawraga davidecellai dragonrez lfriedl balajis yoh j3xucite kintoki koller mikaelhuss ruvido gcalda grahamc iris_2001 lpfernandes winterschlaefer Evangelia cdeane shung phoenixzxl stefanoallesina ellakat frohike shikin ksiek carlk kdl GeneGo
  • The small world inside large metabolic networks.
    Proc R Soc Lond B Biol Sci, Vol. 268, No. 1478. (7 September 2001), pp. 1803-1810.
    by A Wagner, DA Fell
    posted to selection rate protein-protein networks interactions interaction-network evolution connectivity by diamantis on 2008-10-28 17:16:50 as ** along with 6 people and 1 group mague yoh Evangelia athleem pmendes mdstobbe JJJ
  • Molecular evolution in large genetic networks: does connectivity equal constraint?
    J Mol Evol, Vol. 58, No. 2. (February 2004), pp. 203-211.
    by MW Hahn, GC Conant, A Wagner
    posted to selection rate protein-protein interactions interaction-network genome genes evolution constraint connectivity by diamantis on 2008-10-28 17:13:58 as ** along with 2 people and 1 group penka cjeans Nie
  • Global network analysis of phenotypic effects: protein networks and toxicity modulation in Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A, Vol. 101, No. 52. (28 December 2004), pp. 18006-18011.
    by MR Said, TJ Begley, AV Oppenheim, DA Lauffenburger, LD Samson
    posted to toxicity protein-protein networks interactions interaction-network genome genes centrality by diamantis on 2008-10-28 17:09:36 as ** along with 2 people and 1 group opheliav cdppublications CDP
  • Statistical mechanics of complex networks
    Reviews of Modern Physics, Vol. 74, No. 1. (2002)
    by Reka Albert, Albert L Barabasi
    posted to statistical networks mechanism mechanics interaction-network by diamantis on 2008-10-28 17:03:07 as ** along with 30 people AnneB phreeza jmenche bruno alexphys eegilbert mullonc orahcio cmmorel itmeson mbliemel eyliu fukken cristinaalp merazzle kevina muraken babyone somasanyal jaspervoskuilen timflutre ransombriggs nolodie kikiblue7 e1000ian stefanoallesina jotwin ebalp spool jmchauvet
  • Emergence of Scaling in Random Networks
    Science, Vol. 286, No. 5439. (15 October 1999), pp. 509-512.
    by Albert-László Barabási, Réka Albert
    posted to scaling scale-free random protein-protein networks by diamantis on 2008-10-28 16:58:22 as ** along with 27 people czeller alanyang kaarsinogen pgastrein nolodie qwermish dragonrez shivaram tolosoft balicea ddahlem merazzle Borelli muraken lshaw gurkanbebek jaspervoskuilen rcrane ransombriggs idreams2 nkishan justforscraps Evangelia kb Diego_Prada subhacom ethkim
  • Asymmetric Functional Divergence of Duplicate Genes in Yeast
    Mol Biol Evol, Vol. 19, No. 10. (1 October 2002), pp. 1760-1768.
    by Andreas Wagner
    posted to protein-protein networks interactions interaction-network genome genes duplications by diamantis on 2008-10-28 16:52:43 as **
  • Birth of scale-free molecular networks and the number of distinct DNA and protein domains per genome
    Bioinformatics, Vol. 17, No. 10. (1 October 2001), pp. 988-996.
    by Andrey Rzhetsky, Shawn M Gomez
    posted to scale-free power-law mechanism interactions interaction-network by diamantis on 2008-10-28 16:50:40 as ** along with 1 person dylanwalker
  • Lethality and centrality in protein networks
    Nature, Vol. 411, No. 6833. (3 May 2001), pp. 41-42.
    by H Jeong, SP Mason, AL Barabasi, ZN Oltvai
    posted to protein-protein lethality interactions interaction-network genes centrality by diamantis on 2008-10-28 16:47:27 as ** along with 16 people and 3 groups dylanwalker jiny kuhn cmmorel nickluscombe gurkanbebek jeremymiller timflutre ruvido gcalda grahamc lpfernandes Evangelia iris_2001 cerca ethkim EBI-regulation GeschwindLab ParkinsonLab_at_MaRS
  • Hierarchical Organization of Modularity in Metabolic Networks
    Science, Vol. 297, No. 5586. (30 August 2002), pp. 1551-1555.
    by E Ravasz, AL Somera, DA Mongru, ZN Oltvai, AL Barabasi
    posted to power-law networks metabolic by diamantis on 2008-10-28 16:45:18 as ** along with 15 people and 9 groups shivaram alexg yish wnpx ddahlem neveaire bigbossman griota jeremymiller natstreet karfunkel Evangelia stefanoallesina ellakat iris_2001 Biostatistics Computational-Genomics Bioinformatics mathgamespatterns Neuroscience dtl vds-arg eni GeschwindLab
  • Using protein complexes to predict phenotypic effects of gene mutation
    Genome Biology, Vol. 8 (27 November 2007), R252.
    by Hunter B Fraser, Joshua B Plotkin
    posted to protein-protein prediction interactions interaction-network disease by diamantis on 2008-10-28 16:41:00 as read along with 5 people winterschlaefer grahamc ramensky jiny bpcusack
  • Discovering disease-genes by topological features in human proteinprotein interaction network
    Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2800-2805.
    by Xu, Jianzhen, Li, Yongjin
    posted to protein-protein prediction interactions interaction-network disease by diamantis on 2008-10-28 16:39:12 as read along with 3 people and 2 groups marcius skhadar ealloza BioinfoCIPF SGU-CIPF
  • Predicting disease genes using protein-protein interactions.
    J Med Genet, Vol. 43, No. 8. (August 2006), pp. 691-698.
    by M Oti, B Snel, MA Huynen, HG Brunner
    posted to protein-protein prediction interactions interaction-network genes disease by diamantis on 2008-10-28 16:35:30 as read along with 6 people winterschlaefer bicko jiny svdate xingxu balicea
  • Protein Polymorphism as a Phase of Molecular Evolution
    Nature, Vol. 229, No. 5285. (12 February 1971), pp. 467-469.
    by Motoo Kimura, Tomoko Ohta
    posted to theory population neutral molecular genetics evolution by diamantis on 2008-10-12 19:59:12 as read along with 1 person and 1 group stevanspringer FAB-lab
  • Power-law distributions in empirical data
    (7 Jun 2007)
    by Aaron Clauset, Cosma R Shalizi, MEJ Newman
    posted to estimation power-law statistics by diamantis on 2008-06-22 05:04:54 as read along with 31 people and 1 group yonyoni laurobeltrao mmcgloho galyardt gconaldi egh ansobol lfriedl jjray itmeson dumpa madhadron sdvillal bigbossman merazzle xpontus muraken sugarexpletive jaspervoskuilen tomhebbron gi0rgi0ne amoebe jasonn pprett AbnerCYH halukbingol anhlc stringertheory deanmalmgren jyew nazareno EntrepreneurialRisks
  • Parameter estimation for power-law tail distributions by maximum likelihood methods
    (14 Apr 2007)
    by Heiko Bauke
    posted to estimation power-law statistics by diamantis on 2008-06-22 05:02:42 as read along with 1 person tuttle
  • Assembly rules for protein networks derived from phylogenetic-statistical analysis of whole genomes
    BMC Evolutionary Biology, Vol. 7, No. Suppl 1. (8 February 2007), S16.
    by M Pagel, A Meade, D Scott
    posted to interaction-network power-law by diamantis on 2008-06-20 00:46:26 as ***
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