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dgront's library [437 articles]

最近录入 dgront's 文献库.
  • Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
    Nat Genet, Vol. 25, No. 1. (May 2000), pp. 25-29.
    by M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock
  • Creating the gene ontology resource: design and implementation.
    Genome Res, Vol. 11, No. 8. (August 2001), pp. 1425-1433.
    by
  • Continuous in Vitro Evolution of Catalytic Function
    Science, Vol. 276, No. 5312. (25 April 1997), pp. 614-617.
    by Martin C Wright, Gerald F Joyce
    posted to experimental evolution by dgront on 2008-06-24 22:45:13 as read
  • From The Origin of Species to the origin of bacterial flagella
    Nature Reviews Microbiology, Vol. 4, No. 10. (05 September 2006), pp. 784-790.
    by Mark J Pallen, Nicholas J Matzke
  • Influence of conservation on calculations of amino acid covariance in multiple sequence alignments.
    Proteins, Vol. 56, No. 2. (1 August 2004), pp. 211-221.
    by AA Fodor, RW Aldrich
  • An algorithm for progressive multiple alignment of sequences with insertions
    PNAS, Vol. 102, No. 30. (26 July 2005), pp. 10557-10562.
    by Ari Loytynoja, Nick Goldman
  • Relating protein pharmacology by ligand chemistry
    Nature Biotechnology, Vol. 25, No. 2. (07 February 2007), pp. 197-206.
    by Michael J Keiser, Bryan L Roth, Blaine N Armbruster, Paul Ernsberger, John J Irwin, Brian K Shoichet
  • Clustered sequence representation for fast homology search.
    Journal of computational biology : a journal of computational molecular cell biology, Vol. 14, No. 5. (June 2007), pp. 594-614.
    posted to sequence_alignment data_processing clustering by dgront on 2008-06-20 18:06:30 as read
  • Information theory analysis of the relationship between primary sequence structure and ligand recognition among a class of facilitated transporters
    Journal of Theoretical Biology, Vol. 174, No. 2. (21 May 1995), pp. 179-188.
    by Rufus M Williamson
    posted to residue-conservation msa-analysis by dgront on 2008-06-18 18:12:14 as read
  • The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Jonathan Manning, Emily Jefferson, Geoffrey Barton
  • Predicting functionally important residues from sequence conservation
    Bioinformatics (22 May 2007), btm270.
    by John A Capra, Mona Singh
  • Hearing silence: non-neutral evolution at synonymous sites in mammals
    Nature Reviews Genetics, Vol. 7, No. 2. (2006), pp. 98-108.
    by JV Chamary, Joanna L Parmley, Laurence D Hurst
  • SCIENCE COMMUNICATION: Public Acceptance of Evolution
    Science, Vol. 313, No. 5788. (11 August 2006), pp. 765-766.
    by Jon D Miller, Eugenie C Scott, Shinji Okamoto
  • Utility library for structural bioinformatics.
    Bioinformatics, Vol. 24, No. 4. (28 January 2008), pp. 584-585.
    by Dominik Gront, Andrzej Kolinski
    posted to my_own tools by dgront on 2008-03-27 16:11:07 as read along with 3 people chad_davis rabio Minty
  • Kullback-Leibler divergence for evaluating bioequivalence.
    Stat Med, Vol. 22, No. 6. (30 March 2003), pp. 913-930.
    posted to statistics by dgront on 2008-03-24 21:50:47 as read
  • A physically meaningful method for the comparison of potential energy functions
    Journal of Computational Chemistry, Vol. 27, No. 2. (2006), pp. 238-252.
    by José L Alonso, Pablo Echenique
    posted to force_field by dgront on 2008-03-20 22:21:05 as read along with 1 person qwermish
  • The global trace graph, a novel paradigm for searching protein sequence databases.
    Bioinformatics, Vol. 23, No. 18. (15 September 2007), pp. 2361-2367.
    by A Heger, S Mallick, C Wilton, L Holm
    posted to graph_theory sequence_alignment by dgront on 2008-03-20 22:04:15 as read
  • De Novo Computational Design of Retro-Aldol Enzymes
    Science, Vol. 319, No. 5868. (7 March 2008), pp. 1387-1391.
    by Lin Jiang, Eric A Althoff, Fernando R Clemente, Lindsey Doyle, Daniela Rothlisberger, Alexandre Zanghellini, Jasmine L Gallaher, Jamie L Betker, Fujie Tanaka, Carlos F Barbas, Donald Hilvert, Kendall N Houk, Barry L Stoddard, David Baker
  • Protein crystallography for non-crystallographers, or how to get the best (but not more) from published macromolecular structures
    FEBS Journal, Vol. 275, No. 1. (2008), pp. 1-21.
    by Alexander Wlodawer, Wladek Minor, Zbigniew Dauter, Mariusz Jaskolski
    posted to experimental review xray by dgront on 2008-03-20 21:15:50 as read
  • Variable Kernel Density Estimation
    The Annals of Statistics, Vol. 20, No. 3. (1992), pp. 1236-1265.
    by George R Terrell, David W Scott
    posted to statistics by dgront on 2008-03-03 20:03:01 as **
  • Smoothing by Local Regression: Principles and Methods
    (1996), pp. 10-49.
    by WS Cleveland, CL Loader
    edited by W Haerdle, MG Schimek
    posted to regression review statistics by dgront on 2008-02-29 19:53:27 as *****
  • Data-Based Choice of Histogram Bin Width
    The American Statistician, Vol. 51, No. 1. (1997), pp. 59-64.
    by MP Wand
  • Nonparametric Density Estimation: Toward Computational Tractability
    (2003)
    by AG Gray, AW Moore
    posted to algorithms statistics by dgront on 2008-02-26 21:43:33 as read
  • Five Balltree Construction Algorithms
    (December 1989)
    by Stephen M Omohundro
    posted to algorithms by dgront on 2008-02-26 21:28:49 as read
  • Protein backbone angle prediction with machine learning approaches.
    Bioinformatics, Vol. 20, No. 10. (10 July 2004), pp. 1612-1621.
    by R Kuang, CS Leslie, AS Yang
    posted to backbone by dgront on 2008-02-08 23:00:48 as **
  • Adaptive Kernel Density Estimation
    Stata Journal, Vol. 3 (2003), pp. 148-156.
    by S Sain
  • Cyclic coordinate descent: A robotics algorithm for protein loop closure.
    Protein Sci, Vol. 12, No. 5. (May 2003), pp. 963-972.
  • Nearest-Neighbor Clutter Removal for Estimating Features in Spatial Point Processes
    Journal of the American Statistical Association, Vol. 93, No. 442. (1998), pp. 577-584.
    by Simon Byers, Adrian E Raftery
    posted to clustering statistics by dgront on 2008-01-21 02:28:23 as read
  • Model-Based Clustering, Discriminant Analysis, and Density Estimation
    pp. 611-631.
  • Bayesian Regularization for Normal Mixture Estimation and Model-Based Clustering
    Journal of Classification, Vol. 24 (2007), pp. 155-181.
    by Chris Fraley, Adrian E Raftery
    posted to clustering statistics by dgront on 2008-01-20 20:40:11 as read
  • A global geometric framework for nonlinear dimensionality reduction.
    Science, Vol. 290, No. 5500. (22 December 2000), pp. 2319-2323.
  • Nonlinear Dimensionality Reduction by Locally Linear Embedding
    Science, Vol. 290, No. 5500. (22 December 2000), pp. 2323-2326.
    by Sam T Roweis, Lawrence K Saul
  • The penultimate rotamer library
    Proteins: Structure, Function, and Genetics, Vol. 40, No. 3. (2000), pp. 389-408.
    by Simon C Lovell, Michael J Word, Jane S Richardson, David C Richardson
    posted to atom_reconstruction rotamers by dgront on 2008-01-17 19:35:29 as read along with 2 people kazemi mijam
  • "Multi-Dimensional Density Estimation"
    (2004), pp. 229-263.
    by DW Scott, SR Sain
    edited by CR Rao, EJ Wegman
    posted to statistics by dgront on 2008-01-15 16:24:55 as read
  • Bayesian statistical analysis of protein side-chain rotamer preferences.
    Protein Sci, Vol. 6, No. 8. (August 1997), pp. 1661-1681.
    by RL Dunbrack, FE Cohen
  • Evaluation of coarse grained models for hydrogen bonds in proteins.
    J Comput Chem (13 February 2007)
    by David De Sancho, Antonio Rey
    posted to force_field by dgront on 2007-12-16 17:54:50 as ***** along with 2 people choonpeng mijam
  • Structure validation by Calpha geometry: phi,psi and Cbeta deviation.
    Proteins, Vol. 50, No. 3. (15 February 2003), pp. 437-450.
    by SC Lovell, IW Davis, WB Arendall, P de Bakker, JM Word, MG Prisant, JS Richardson, DC Richardson
  • Bayesian statistical studies of the Ramachandran distribution.
    Stat Appl Genet Mol Biol, Vol. 4 (2005)
    posted to bayesian force_field by dgront on 2007-12-14 22:38:42 as read
  • The Impact of Structural Genomics: Expectations and Outcomes
    Science, Vol. 311, No. 5759. (20 January 2006), pp. 347-351.
    by John-Marc Chandonia, Steven E Brenner
  • Evaluating Regularizers for Estimating Distributions of Amino Acids
    (1995)
    by K Karplus
    posted to sequence_alignment by dgront on 2007-11-26 19:45:18 as read
  • Speeding-Up Hierarchical Agglomerative Clustering in Presence of Expensive Metrics
    Advances in Knowledge Discovery and Data Mining (2005), pp. 378-387.
    by Mirco Nanni
    posted to algorithms clustering by dgront on 2007-11-19 21:14:08 as read
  • Fast hierarchical clustering and other applications of dynamic closest pairs
    J. Exp. Algorithmics, Vol. 5 (2000)
    by David Eppstein
    posted to algorithms clustering by dgront on 2007-11-19 20:53:52 as **
  • A multidimensional version of the Kolmogorov-Smirnov test
    Monthly Notices of the Royal Astronomical Society, Vol. 225 (1987), pp. 155-170.
    posted to statistics by dgront on 2007-11-17 01:26:30 as ***** along with 687 people and 131 groups fernand0 dperkel egh jyuh samth sora florine ladygoat hopm hellige parmentierf ssn mortimer tinkha V plaugg ansobol mjaz berthelemy eldan pdlug zephoria carloscabanillas Janos bkliethermes nazareno elsantosneto januadiaboli yaroslavvb jurijmlotman geomblog srl bigga treycausey CSG mcphee chandrashekar denns matzke sherrivokey sona cassj lijil hlovise coolger incites bigmagpie alicetiara yorgos johannsen cavlec smbrower viller jenmy mlzafron tymmail sedging davidr macowell eimaj42jdp Flit BenWillems agallet hawesie sngourlay jolilius rmagf acer ville garyfeng danifazzio willwade gantlord melanieramage mgregg cwb neteler carneym crispinb rdlong lillekatt davemack agarza carsonr imcdnzl tjimenez Tolik lna dmikurube szityu michmill P2324548 jpbenda Vaccine tadm mkwalker anar grzegorz japple planetoid okarsligil stormybriggs UWerplab nbr inbetweener pafmon stina pgastrein xiruela kutabar jfr xamde kliether mleis jshahin cmunson lfriedl sharonhoward ccots terraces czlamer brent_lance subhradeep jjray Jellyfish cmmorel bayesian benavides ghsalazar manuelpq sekulerlab jmaryott kristina chad_davis Ayest thens RMGraze e2holmes JAShapiro contradictoryben lrodero jamesfournie nybon hawkestein diegolino_veneziano rvosa Schmidtc lyongu ricmilne KarinaFigueroa jfmenudet cdmilligan great_apes brthz juliajumeau gloinf billwolff mrkrause halsnalle pintman yish mkcerusky cyph3r idm smithco ruudvanleeuwen BarrosH aelva harshpshah earnoux princessbritty Laki kupopo ryang eustatic daqing balicea stain matts ram frankgrimes Pfaff9 locatellimp seawidget ianli kate_waxlyrical rherring ThomasEtEckert cliona shaun gregnishihara harmonjt Happybene jklugman mwyarbro rburnett prabakaran nperrin tystl gugek NicolasNeubauer gytisc Nele pedagogicapprentice dlouzeck phillipkent emerson rafamayo arichar6 pasion sadsackmac gbae redcourgette sunilbajpai JJNonesuch heintz BuckeyePhysicist bretblosser charlesijones term duckysherwood madhadron ypeter cmm agraham yijisoo jberro peaksun balabu djsaab crumj garypearce rinelk plashkes PaulB charlescearl malkav30 p2p-sec langec tuaba os252 JonathanFeinberg jingliu dvoigt hywel tshr isorhiza foistudy jenine donade kmcolo fisherp voiklis insilico fitzgeraldsteele junoda sumeetonweb familydoc craigtalbert dmitri83 dmboyer martint RalphPutnam atsu-kan hlwoodcock reta gogabr smmurphy rafabravo dabhishe JennaW hisashim cjones chuggins Sulpicus ranb alikocho hiromark gane5h l-alex rdiaz pilho danzinde ueberweise wangsd echinotrix ak Odi bezbozhnik todchambers perceptron wasteland93 yizheng stephane-jean mahlow mbaric mtr anon_pl dir289 lanubile fcalefato dpeeler QFRMC xwenlong johncumbers kgronemyer keitokita hkl pervane mpennell kedmond mfisk brusilovsky gregflanders hgamboa pgeymueller last5laps jbrown nathanielvirgo rwm101 ChristianGraf marohn davetown101 barbz79it naturecure edgarbc muellerkind fugitive joshuashen kndiaye aviad_work crusher lucbelanger lauragonzalez Manhal gagliol ashandanj lns cblock trungdong lechristophe ealloza s-adachi rsabouni dhingra corcoted Shii vrv fmiyamae livingthingdan kaz229 Haggan knowlengr aniak krzywy tg Rootfruit ricklillie gracev lrsantos babyone eenauk long pereicoco lieselot yeqiwei amcmorl redelings nojhan mkharito rocarvaj stoev tdpessem briansludwig ttsutsumi wenniehu elsiatcase perhapstoopink atbrew fsteeg digitaldust CDivin whshen andersok fpalm gkvas brembs ragha mgran thomaswuebben justaubrey macfreek lilalia azygmunt ddineen miguelbezerra jdiggans sjgaller huminfly thjt shenshei erikwdavis jsvoboda ceegrs2 jared jijkoun slafont mdifranc GregorSuhr jmurdoch mattlee Repton jvrantwijk ible fruminator mamadoudiao mkowa fellow tzmtzm samjlord abbyworld aozkan giorgis fluomouse Tellima RiccardoAlbertoni annmarie37 ciriol sstoerge gengh goingsomewhere ruddyconsult MichaelGaebler nco71 Vezhnick fabianhemmert shangnan Fahland lossius adriancooke baikanamako elisaformist jsanpedro oceanflynn imaginaryunit bobturner grahamc nascardaughter shariffdinah ibschwartz srfairclough joepickrell bouchard islandrru hohkhkh1 alchemyst mlewcio irwink henriksdal cychang padraic trshepherd tarjeiha josemblazquez pitzelberger hukkinen toppi sjc garancher_gougeon_reyotero nmaisonneuve powell digamberjuwekar cmcleod grieth isys1186 aartaki polyparadigm rodney portalqm tkravitz bangb cdm jeanfou CareyNadell teh zwang shivakmr prerona michaelmampaey mick39 dagmar gi0rgi0ne bellia akom kevin7 friveroll khm zetetic karipuf leechuck freddan hp2oo1 jenda_z ngrandy andreacapocci ghunter Maderlock shizhao dayadvham monientiedt rebeccamancy calamar c-gobert baniel wongmld jborn dmschneid tale chrisatcite mloewer hanxiansheng rlai jasonbobe ggorjan zeppe AlisonBabeu eprzekwa J_Raff fornstar yodha Akimasa technical oilpalm spacely j0nes IanBrown TCgroup RalfMitschke ingedwar Oktoplus stonest kaniko cwr jladell rbmoura Leize adjih carpi omidf2 msampson olaf markusd paulschlesinger qwermish librain pkrrules thehajime PeterRabbit paulvb cvq peefeeyatko kinestetika lynleypage truongducthang metaspencer dodger042 jpassoth krokicki tibbitts brianlimyl vogmae doylem nkishan joni2am hayko gjhuang ashko buggle bemike cvarnam umurthy21 andregermanoregert Katje midshipman tgyork ivanois toivotuo jnz snyder84 idonaldson dandaman awc psique Thaverkamp mtugrul buchgeher fairy mebiel lectorespa bennettn waszak forestier claudiotubertini acastaner hkreysa AnneB christiankissig GimpyBee sgclendenon paj prdrieze cortex rschulz aklassen kenneth1ny nschaeff japarejo andreacastelletti schocol scarcelan hillarpoldmaa kcrawlik ipora yavanna Grobi s-fujii kdesmond bjbecerra LTrottier ziggy talkingpoints linxiang mllee monkare scottkb pantxorama petergun6666 iantunbridge farzanehs murb christian_librarian jago jsenn mpisarenco blackm0k applebyb bluecricket mrosenki carterb rsimitev BrianTomasik mfloris adamsi yungyuc schulz iup massimocencini natasjadenouden nickpitman genericg dmmarinlo nikko kericson makbot squirmelia adenkabe ThomasKluge pdessus Neeperando hrwiltse vrich ranger amydash taenneken gvandyk1 giolakat sarahmccrum melody Corbasson skumagai nlauzier mirweis Stepstep abdulpur heiko_reese jeanbean Axis CGREL CMU-HCII NU-PRL UoY-CS-AIG Blog_and_Wiki_Research CompetitionLawAndPolicy Tectonics_and_geomorphology NeuronDynamics Context-driven-testers ReadingLab political_science_students kdl distance remote TUCS-ES_Lab Quantum_physics_Education WAND sims_phd_cohort_2005 ASR digital_youth Librarians biodiversity_conservation Global_biodiversity_model InformationRetrieval Wikipedia AssistiveTechnology Bioinformatics mathgamespatterns MACLab folksonomy Neuroscience VisionLab Personal-Information-Management CMS Stoc_Proc_Ecology_WG LanguageAndBrain BrainTheory dtl hdm id vds-arg ALF DPR EvolutionaryComputation STS infovis 2ndFloor fammed-publichealth AI eni Biofluid FAB-lab DSS NeuralNetworks mobilecomputing tmig_psycho RETA SITCRC CDG cliamte_change folk_epistemology instaar_graduate_students Projet_ENSIMAG climate_change BUiGEM social_navigation Macroelectronics ARC04 The_Truants QFRMC_ConsumerCredit Plant-Tissue-Simulation METRIK Metaheuristics Boydian_Society eLearning BioinfoCIPF Nutritional_Polymorphisms CaltechCMP SEGAL Optimization location SNE kickOffTUG-Robocup NanoMechanicsofMetals_MPIMF Georouting Child_Support Software-Architecture ParkinsonLab_at_MaRS moernerlab ilps livingthing HUCO-627-W07 elearning_research PLE-TEL-project Femtochemistry_LMU ediadem ENSSIBVeille memoir ILK ColDyn ImatiGESemantic AGH-IISG PRC_SEA TCD-NDS102-Project CAOS Adaptive-Web Microbial-Ecology Flexible_ICT-supported_learning Social_Software_ws_07-08 DialogueResearchGroup AM-VideoGames-Gender dIEMoSIRIS microbiology_nijmegen Europe_GPE ZnO_project ADMiRes Health_Sciences_Librarians feminist_technoscience Desgin-by-Contract MITCCI Kopelman_Group DarkMarkGroup VivesMinions PostureMobility compneur Philosophy of physics PsychStatsBanter Video based Animation for People Knowledge_Economy_Reform Global_patent_pools Social Informatics @ IU
  • A Simple Algorithm for Unique Representation of Chemical Structures-Cyclic/Acyclic Functionalized Achiral Molecules
    J. Chem. Inf. Model., Vol. 46, No. 1. (23 January 2006), pp. 52-56.
    posted to chemoinformatics molecule_mining by dgront on 2007-11-16 22:40:01 as read
  • 3D domain swapping: As domains continue to swap
    Protein Sci, Vol. 11, No. 6. (1 June 2002), pp. 1285-1299.
    by Yanshun Liu, David Eisenberg
    posted to domain_swapping review by dgront on 2007-11-16 22:22:59 as ** along with 2 people tny skhadar
  • One sequence, two folds: a metastable structure of CD2.
    Proc Natl Acad Sci U S A, Vol. 92, No. 16. (1 August 1995), pp. 7337-7341.
    by AJ Murray, SJ Lewis, AN Barclay, RL Brady
    posted to domain_swapping by dgront on 2007-11-16 22:15:50 as read
  • Assigning Unique Keys to Chemical Compounds for Data Integration: Some Interesting Counter Examples
    Data Integration in the Life Sciences (2005), pp. 145-157.
    by Greeshma Neglur, Robert L Grossman, Bing Liu
    posted to chemoinformatics molecule_mining by dgront on 2007-11-14 22:00:31 as *****
  • The Resultant Electric Moment of Complex Molecules
    Physical Review, Vol. 39, No. 4. (15 February 1932), 746.
    by Henry Eyring
    posted to internal_coordinates by dgront on 2007-11-13 22:58:57 as read
  • An Empirical Backbone-Backbone Hydrogen-Bonding Potential in Proteins and Its Applications to NMR Structure Refinement and Validation
    J. Am. Chem. Soc., Vol. 126, No. 23. (16 June 2004), pp. 7281-7292.
    by A Grishaev, A Bax
    posted to force_field by dgront on 2007-11-11 00:14:43 as read
  • Prediction of protein conformational freedom from distance constraints
    Proteins: Structure, Function, and Genetics, Vol. 29, No. 2. (7 December 1998), pp. 240-251.
    by BL de Groot, DMF van Aalten, RM Scheek, A Amadei, G Vriend, HJC Berendsen
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