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cjeans's coevolution [48 articles]

当前文献位于 cjeans's 文献库 标签分类为 coevolution. You can also see everyone's coevolution.
  • Reassessing a sparse energetic network within a single protein domain
    Proceedings of the National Academy of Sciences (13 March 2008), 0711732105.
    by Celestine N Chi, Lisa Elfstrom, Yao Shi, Tord Snall, Ake Engstrom, Per Jemth
    posted to coevolution correlated-mutation domain sca by cjeans on 2008-03-15 01:26:36 as ** along with 4 people and 1 group apaydin cactus sunhwan sobolevnrm baker-group
  • Positive selection acting on splicing motifs reflects compensatory evolution
    Genome Res. (18 January 2008), gr.070268.107.
    by Shengdong Ke, Xiang H Zhang, Lawrence A Chasin
    posted to coevolution evolution by cjeans on 2008-01-22 00:43:06 as ** along with 4 people and 1 group operon bpcusack stajich gjuggler Berkeley Mycology
  • High-confidence prediction of global interactomes based on genome-wide coevolutionary networks
    Proceedings of the National Academy of Sciences (16 January 2008), 0709671105.
    by David Juan, Florencio Pazos, Alfonso Valencia
    posted to coevolution evolution mirrortree pin ppi profile by cjeans on 2008-01-17 08:07:50 as ** along with 12 people and 1 group tmmurali brant balicea sebastien_vigneau bluto aconesa Katje roys friendpine huali mdstobbe paolomarcatili microbiology_nijmegen
  • Coevolution with viruses drives the evolution of bacterial mutation rates
    Nature (02 December 2007)
    by Csaba Pal, María D Maciá, Antonio Oliver, Ira Schachar, Angus Buckling
    posted to coevolution by cjeans on 2007-12-17 00:43:49 as ** along with 2 people dayjm cactus
  • Co-evolving residues in membrane proteins
    Bioinformatics, Vol. 23, No. 24. (15 December 2007), pp. 3312-3319.
    by Angelika Fuchs, Antonio J Martin-Galiano, Matan Kalman, Sarel Fleishman, Nir Ben-Tal, Dmitrij Frishman
    posted to coevolution correlated-mutation by cjeans on 2007-12-08 06:35:59 as ** along with 6 people and 2 groups operon breden zwang blasco_morozzo phoenixzxl Lombardo_7 SFUAntibodyResearch signal-duplication
  • A Novel Method for Detecting Intramolecular Coevolution: Adding a Further Dimension to Selective Constraints Analyses
    Genetics, Vol. 173, No. 1. (1 May 2006), pp. 9-23.
    by Mario A Fares, Simon A Travers
    posted to coevolution correlated-mutation by cjeans on 2007-12-04 00:39:43 as ** along with 5 people and 3 groups stevanspringer operon caporaso breden tale FAB-lab biomedical-nlp SFUAntibodyResearch
  • CAPS: coevolution analysis using protein sequences
    Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2821-2822.
    by Fares, A Mario, Mcnally, David
    posted to coevolution correlated-mutation by cjeans on 2007-12-03 06:22:26 as **
  • Large-scale co-evolution analysis of protein structural interlogues using the global protein structural interactome map (PSIMAP)
    Bioinformatics, Vol. 20, No. 7. (1 May 2004), pp. 1138-1150.
    by Wan K Kim, Dan M Bolser, Jong H Park
    posted to coevolution by cjeans on 2007-12-03 02:45:22 as ** along with 2 people medic0747 kintoki
  • Systematic variation of amino acid substitutions for stringent assessment of pairwise covariation.
    J Mol Biol, Vol. 328, No. 5. (16 May 2003), pp. 1061-1069.
    by S Govindarajan, JE Ness, S Kim, EC Mundorff, J Minshull, C Gustafsson
    posted to coevolution correlated-mutation by cjeans on 2007-12-03 02:39:36 as **
  • Identification of G protein-coupled receptors for Drosophila PRXamide peptides, CCAP, corazonin, and AKH supports a theory of ligand-receptor coevolution.
    Proc Natl Acad Sci U S A, Vol. 99, No. 17. (20 August 2002), pp. 11423-11428.
    by Y Park, YJ Kim, ME Adams
    posted to coevolution by cjeans on 2007-12-03 02:34:08 as **
  • Evaluation of a novel method for the identification of coevolving protein residues.
    Protein Eng, Vol. 14, No. 8. (August 2001), pp. 549-555.
    by L Pritchard, P Bladon, J M O Mitchell, M J Dufton
    posted to coevolution correlated-mutation by cjeans on 2007-12-03 02:29:38 as **
  • Reciprocal domain evolution within a transactivator in a restricted sequence space.
    Proc Natl Acad Sci U S A, Vol. 97, No. 7. (28 March 2000), pp. 3314-3318.
    by K Juarez, H Flores, S Dávila, L Olvera, V González, E Morett
    posted to coevolution domain by cjeans on 2007-12-03 02:28:36 as ** along with 1 person gulkur
  • Networks of Coevolving Sites in Structural and Functional Domains of Serpin Proteins
    Molecular Biology and Evolution, Vol. 22, No. 7. (15 July 2005), pp. 1627-1634.
    by Michael J Buck, William R Atchley
    posted to coevolution correlated-mutation by cjeans on 2007-12-02 12:53:47 as ** along with 2 people tale friendpine
  • An Evolutionarily Conserved Network of Amino Acids Mediates Gating in Voltage-dependent Potassium Channels
    Journal of Molecular Biology, Vol. 340, No. 2. (2 July 2004), pp. 307-318.
    by Sarel J Fleishman, Ofer Yifrach, Nir Ben-Tal
    posted to coevolution correlated-mutation by cjeans on 2007-12-02 11:21:48 as ** along with 1 person mingzhi
  • A pair-to-pair amino acids substitution matrix and its applications for protein structure prediction.
    Proteins, Vol. 67, No. 1. (1 April 2007), pp. 142-153.
    by E Eyal, M Frenkel-Morgenstern, V Sobolev, S Pietrokovski
    posted to coevolution correlated-mutation evolution by cjeans on 2007-12-02 10:45:50 as ** along with 2 people bicko Lombardo_7
  • HIV-1 subtype B protease and reverse transcriptase amino acid covariation.
    PLoS Comput Biol, Vol. 3, No. 5. (11 May 2007)
    by SY Rhee, TF Liu, SP Holmes, RW Shafer
    posted to coevolution correlated-mutation hiv by cjeans on 2007-12-02 10:44:04 as ** along with 1 person kieran101
  • Inferring protein-protein interactions in viral proteins by co-evolution of conserved side chains.
    Genome Inform, Vol. 17, No. 1. (2006), pp. 23-35.
    by YE Wang, C DeLisi
    posted to coevolution by cjeans on 2007-12-02 10:29:49 as **
  • Co-evolution of ligand-receptor pairs.
    Nature, Vol. 368, No. 6468. (17 March 1994), pp. 251-255.
    by WR Moyle, RK Campbell, RV Myers, MP Bernard, Y Han, X Wang
    posted to coevolution sample by cjeans on 2007-12-01 07:37:16 as ** along with 1 person and 1 group gcaltabiano LabCompMed
  • Evolution of Two-Component Signal Transduction
    Mol Biol Evol, Vol. 17, No. 12. (1 December 2000), pp. 1956-1970.
    by Kristin K Koretke, Andrei N Lupas, Patrick V Warren, Martin Rosenberg, James R Brown
    posted to coevolution evolution by cjeans on 2007-12-01 07:29:46 as ** along with 1 person tale
  • Co-evolution of proteins with their interaction partners.
    J Mol Biol, Vol. 299, No. 2. (2 June 2000), pp. 283-293.
    by CS Goh, AA Bogan, M Joachimiak, D Walther, FE Cohen
    posted to coevolution ppi by cjeans on 2007-11-27 12:15:12 as ** along with 1 person opheliav
  • Using multiple sequence correlation analysis to characterize functionally important protein regions
    Protein Eng., Vol. 16, No. 6. (1 June 2003), pp. 397-406.
    by Manish C Saraf, Gregory L Moore, Costas D Maranas
    posted to coevolution correlated-mutation by cjeans on 2007-11-27 06:12:34 as ** along with 2 people dimka Alan
  • Exploring a Phylogenetic Approach for the Detection of Correlated Substitutions in Proteins
    Mol Biol Evol, Vol. 17, No. 11. (1 November 2000), pp. 1753-1759.
    by Pierre Tuff, Pierre Darlu
    posted to coevolution evolution sequence by cjeans on 2007-11-26 06:33:55 as ** along with 1 person tale
  • Inferring functional information from domain co-evolution.
    Bioinformatics, Vol. 22, No. 1. (1 January 2006), pp. 40-49.
    by Y Kim, M Koyutürk, U Topkara, A Grama, S Subramaniam
    posted to domain coevolution by cjeans on 2007-11-26 06:18:10 as ** along with 2 people balajis gulkur
  • Correlated mutations: Advances and limitations. A study on fusion proteins and on the Cohesin-Dockerin families.
    Proteins (28 February 2006)
    by Inbal Halperin, Haim Wolfson, Ruth Nussinov
    posted to coevolution correlated-mutation ppi sequence by cjeans on 2007-11-26 00:46:48 as ** along with 7 people bicko gbart ramensky tale mingzhi friendpine Lombardo_7
  • Predicting protein domain interactions from coevolution of conserved regions.
    Proteins, Vol. 67, No. 4. (1 June 2007), pp. 811-820.
    by MG Kann, R Jothi, PF Cherukuri, TM Przytycka
    posted to coevolution mirrortree by cjeans on 2007-11-25 10:46:29 as **
  • Detection and reduction of evolutionary noise in correlated mutation analysis
    Protein Engineering, Design and Selection, Vol. 18, No. 5. (1 May 2005), pp. 247-253.
    by Orly Noivirt, Miriam Eisenstein, Amnon Horovitz
    posted to coevolution correlated-mutation sequence by cjeans on 2007-11-25 10:45:00 as ** along with 2 people and 2 groups barry gbart structural_bioinformatics Bioinformatics
  • Prediction of distant residue contacts with the use of evolutionary information.
    Proteins, Vol. 58, No. 4. (1 March 2005), pp. 935-949.
    by S Vicatos, BV Reddy, Y Kaznessis
    posted to coevolution correlated-mutation sequence structure by cjeans on 2007-11-25 10:44:34 as **
  • Coevolutionary networks of splicing cis-regulatory elements
    Proceedings of the National Academy of Sciences (12 November 2007), 0707349104.
    by Xinshu Xiao, Zefeng Wang, Minyoung Jang, Christopher B Burge
    posted to coevolution network regulation by cjeans on 2007-11-13 07:22:52 as ** along with 2 people oelemento roys
  • PLoS ONE: Epistatic Interactions Alter Dynamics of Multilocus Gene-for-Gene Coevolution
    posted to coevolution by cjeans on 2007-11-09 01:01:18 as **
  • Detecting Coevolution in and among Protein Domains
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e211.
    by Chen-Hsiang Yeang, David Haussler
    posted to coevolution sequence by cjeans on 2007-11-05 07:47:46 as ** along with 1 person zwang
  • Characterization of Compensated Mutations in Terms of Structural and Physico-Chemical Properties.
    J Mol Biol (26 September 2006)
    by Carles Ferrer-Costa, Modesto Orozco, Xavier de la D Cruz
    posted to coevolution residues by cjeans on 2007-06-27 13:50:03 as *** along with 3 people and 2 groups caporaso ramensky cat_worth structural_bioinformatics biomedical-nlp
  • Co-evolution of transcriptional and post-translational cell-cycle regulation
    Nature (27 September 2006)
    by Lars J Jensen, Thomas S Jensen, Ulrik de Lichtenberg, Søren Brunak, Peer Bork
    posted to cell-cycle coevolution integrative system-biology transcription by cjeans on 2007-06-27 08:22:23 as **** along with 7 people and 1 group JAShapiro adepace koller olympos ccr kluck larsjuhljensen EisenLab
  • An empirical test of the concomitantly variable codon hypothesis
    PNAS (19 June 2007), 0701900104.
    by Lauren M Merlo, Mark Lunzer, Antony M Dean
    posted to coevolution evolution hypothesis by cjeans on 2007-06-22 03:33:24 as **** along with 2 people Retchless sebastien_vigneau
  • Co-evolution of transcription factors and their targets depends on mode of regulation
    Genome Biology, Vol. 7 (19 July 2006), R62.
    by Ruth Hershberg, Hanah Margalit
    posted to coevolution evolution network regulation transcription trn by cjeans on 2007-06-19 13:03:37 as ***** along with 4 people and 2 groups indigoviolet dpollard cisevol PetrovLab EisenLab cis-regulatory-evolution
  • Specificity in protein interactions and its relationship with sequence diversity and coevolution.
    Proc Natl Acad Sci U S A (27 April 2007)
    by Luke Hakes, Simon C C Lovell, Stephen G G Oliver, David L L Robertson
    posted to coevolution expression interaction mirrortree phylogenetic by cjeans on 2007-06-11 14:40:31 as read along with 9 people and 2 groups stevanspringer bjorns zwang Garamonfok cursonivel1 tale winterschlaefer phoenixzxl chrys FAB-lab cursonivel1
  • Functional redundancy of worm spliceosomal proteins U1A and U2B”.
    Proc Natl Acad Sci U S A, Vol. 104, No. 23. (5 June 2007), pp. 9753-9757.
    by T Saldi, C Wilusz, M Macmorris, T Blumenthal
    posted to coevolution evolution function by cjeans on 2007-06-10 10:15:02 as *** along with 1 person and 1 group tharris C. elegans / WormBase
  • Correlated mutations contain information about protein-protein interaction.
    J Mol Biol, Vol. 271, No. 4. (29 August 1997), pp. 511-523.
    by F Pazos, M Helmer-Citterich, G Ausiello, A Valencia
    posted to residues critical coevolution by cjeans on 2007-02-05 08:05:15 as ***** along with 3 people gurkanbebek tale Lombardo_7
  • A mathematical framework for the study of coevolution
    (2003)
    by A Bucci, J Pollack
    posted to coevolution by cjeans on 2007-02-05 07:51:13 as ** along with 3 people pchiusano chrys pradiptaray
  • Evolutionary diversification of TTX-resistant sodium channels in a predator-prey interaction
    Nature, Vol. 434, No. 7034. (07 April 2005), pp. 759-763.
    by Shana L Geffeney, Esther Fujimoto, Edmund Brodie, Edmund Brodie, Peter C Ruben
    posted to coevolution by cjeans on 2007-02-05 07:50:45 as *** along with 1 person and 1 group stevanspringer FAB-lab
  • A Comparison of Evolutionary and Coevolutionary Search
    (July 2001), pp. 20-25.
    by Ludo Pagie, Melanie Mitchell
    edited by Richard K Belew, Hugues Juillè
    posted to coevolution by cjeans on 2007-02-05 07:50:11 as ** along with 1 person mthomure
  • A Model-Based Approach for Detecting Co-evolving Positions in a Molecule.
    Mol Biol Evol (8 June 2005)
    by Julien Dutheil, Tal Pupko, Alain Jean-Marie, Nicolas Galtier
    posted to residues critical coevolution by cjeans on 2007-02-05 06:59:58 as ***** along with 2 people and 1 group stevanspringer RMGraze FAB-lab
  • Automatic Methods for Predicting Functionally Important Residues
    Journal of Molecular Biology, Vol. 326, No. 4. (28 February 2003), pp. 1289-1302.
    by A Del, Florencio Pazos, Alfonso Valencia
    posted to residues critical coevolution by cjeans on 2007-02-05 06:59:32 as ***** along with 2 people and 1 group mdimmic sriram_s TNT
  • Correlated Evolutionary Pressure at Interacting Transcription Factors and DNA Response Elements Can Guide the Rational Engineering of DNA Binding Specificity
    Journal of Molecular Biology, Vol. 350, No. 3. (15 July 2005), pp. 402-415.
    by Michele Raviscioni, Peili Gu, Minawar Sattar, Austin J Cooney, Olivier Lichtarge
    posted to coevolution by cjeans on 2007-02-05 06:58:14 as **** along with 4 people mdimmic kaarsinogen chrn lulab
  • Evolutionary Consequences of Coevolving Targets
    Evolutionary Computation, Vol. 5, No. 4. (1997), pp. 401-418.
    by Ludo Pagie, Paulien Hogeweg
    posted to coevolution by cjeans on 2007-02-05 06:57:19 as **** along with 2 people mthomure cwr
  • Using information theory to search for co-evolving residues in proteins.
    Bioinformatics, Vol. 21, No. 22. (15 November 2005), pp. 4116-4124.
    by LC Martin, GB Gloor, SD Dunn, LM Wahl
    posted to coevolution by cjeans on 2007-02-05 06:43:19 as **** along with 4 people and 1 group bioinfo caporaso rabio rsantana biomedical-nlp
  • Assessing Protein Co-evolution in the Context of the Tree of Life Assists in the Prediction of the Interactome
    Journal of Molecular Biology, Vol. 352, No. 4. (30 September 2005), pp. 1002-1015.
    by Florencio Pazos, Juan A Ranea, David Juan, Michael J Sternberg
    posted to profile phylogenetic coevolution by cjeans on 2007-02-04 13:47:00 as **** along with 1 person balajis
  • The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships
    Bioinformatics, Vol. 21, No. 17. (1 September 2005), pp. 3482-3489.
    by Tetsuya Sato, Yoshihiro Yamanishi, Minoru Kanehisa, Hiroyuki Toh
    posted to profile phylogenetic coevolution by cjeans on 2007-02-04 13:46:25 as ****
  • The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships.
    Bioinformatics, Vol. 21, No. 17. (1 September 2005), pp. 3482-3489.
    by T Sato, Y Yamanishi, M Kanehisa, H Toh
    posted to profile phylogenetic coevolution by cjeans on 2007-02-04 13:41:40 as **** along with 2 people bioinfo bilab
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