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chrisamiller's library [40 articles]

最近录入 chrisamiller's 文献库.
  • Seeding and Propagation of Untransformed Mouse Mammary Cells in the Lung
    Science (28 August 2008), 1161621.
    by Katrina Podsypanina, Yi-Chieh N Du, Martin Jechlinger, Levi J Beverly, Dolores Hambardzumyan, Harold Varmus
    posted to metastasis cancer by chrisamiller on 2008-09-26 02:29:19 as ** along with 3 people and 3 groups ajaymalik songpku Zephyrus Breast Cancer Reading Club Breast cancer Roswell Cancer Crosstalk
  • A multidimensional analysis of genes mutated in breast and colorectal cancers
    Genome Res. (10 August 2007), gr.6431107.
    by Jimmy Lin, Christine M Gan, Xiaosong Zhang, Sian Jones, Tobias Sjoblom, Laura D Wood, Williams D Parsons, Nickolas Papadopoulos, Kenneth W Kinzler, Bert Vogelstein, Giovanni Parmigiani, Victor E Velculescu
    posted to networks mutations expression cancer by chrisamiller on 2008-09-25 04:45:07 as read along with 3 people jfr cerami xingxu
  • From the Cover: Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
    PNAS, Vol. 102, No. 43. (25 October 2005), pp. 15545-15550.
    by Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander, Jill P Mesirov
    posted to networks expression algorithm by chrisamiller on 2008-09-25 04:37:30 as read along with 23 people and 4 groups ihpark dragonrez jfr balajis maryee xwbcn hpiwowar aviad_work ealloza jdiggans jeremymiller frohike hawkeyehammer schuylrp natstreet heliopais shikin waghsk roys ellakat srp33 sgoetz AbnerCYH Bioinformatics BioinfoCIPF GeschwindLab Indigene
  • Resolving Individuals Contributing Trace Amounts of DNA to Highly Complex Mixtures Using High-Density SNP Genotyping Microarrays
    PLoS Genet, Vol. 4, No. 8. (2008), e1000167.
    by Nils Homer, Szabolcs Szelinger, Margot Redman, David Duggan, Waibhav Tembe, Jill Muehling, John V Pearson, Dietrich A Stephan, Stanley F Nelson, David W Craig
    posted to snp privacy hapmap by chrisamiller on 2008-09-25 04:28:57 as read along with 5 people sometwo jasonbobe djkt rs fpattyn
  • A module map showing conditional activity of expression modules in cancer.
    Nature Genetics, Vol. 36, No. 10. (October 2004), pp. 1090-1098.
    by E Segal, N Friedman, D Koller, A Regev
    posted to no-tag by chrisamiller on 2008-09-25 04:08:57 as **
  • notes Marked Genomic Differences Characterize Primary and Secondary Glioblastoma Subtypes and Identify Two Distinct Molecular and Clinical Secondary Glioblastoma Entities
    Cancer Res, Vol. 66, No. 23. (1 December 2006), pp. 11502-11513.
    by Elizabeth A Maher, Cameron Brennan, Patrick Y Wen, Laura Durso, Keith L Ligon, Aaron Richardson, Deepak Khatry, Bin Feng, Raktim Sinha, David N Louis, John Quackenbush, Peter M Black, Lynda Chin, Ronald A Depinho
    posted to subtypes gbm cancer acgh by chrisamiller on 2008-09-25 04:01:45 as ****
  • Gene expression profiling reveals molecularly and clinically distinct subtypes of glioblastoma multiforme
    Proceedings of the National Academy of Sciences, Vol. 102, No. 16. (19 April 2005), pp. 5814-5819.
    by Yu Liang, Maximilian Diehn, Nathan Watson, Andrew W Bollen, Ken D Aldape, Kelly M Nicholas, Kathleen R Lamborn, Mitchel S Berger, David Botstein, Patrick O Brown, Mark A Israel
    posted to subtypes gbm expression cancer by chrisamiller on 2008-09-25 03:54:54 as read along with 1 person srp33
  • PTEN-deficient cancers depend on PIK3CB
    Proceedings of the National Academy of Sciences, Vol. 105, No. 35. (2008), pp. 13057-13062.
    by Susan Wee, Dmitri Wiederschain, Sauveur-Michel Maira, Alice Loo, Christine Miller, Rosalie Debeaumont, Frank Stegmeier, Yung-Mae Yao, Christoph Lengauer
    posted to colorectal cancer by chrisamiller on 2008-09-25 03:53:33 as read
  • What are decision trees?
    Nature Biotechnology, Vol. 26, No. 9., pp. 1011-1013.
    by Carl Kingsford, Steven L Salzberg
    posted to review algorithm by chrisamiller on 2008-09-25 03:44:53 as read along with 9 people and 1 group markusd druvus Zephyrus brianb dullhunk sjcockell zwang GeeSharpMinor neils Roswell Cancer Crosstalk
  • Integrated array-comparative genomic hybridization and expression array profiles identify clinically relevant molecular subtypes of glioblastoma.
    Cancer Res, Vol. 65, No. 5. (1 March 2005), pp. 1678-1686.
    by JM Nigro, A Misra, L Zhang, I Smirnov, H Colman, C Griffin, N Ozburn, M Chen, E Pan, D Koul, WK Yung, BG Feuerstein, KD Aldape
    posted to gbm expression clustering cancer acgh by chrisamiller on 2008-09-25 03:43:57 as ** along with 2 people jfr bioguru2000
  • R/parallel - speeding up bioinformatics analysis with R
    BMC Bioinformatics, Vol. 9 (22 September 2008), 390.
    by Gonzalo Vera, Ritsert C Jansen, Remo L Suppi
    posted to r optimization library by chrisamiller on 2008-09-25 00:07:43 as ** along with 12 people and 1 group ptrobajo pengchy shikin robertlischke cisevol druvus renatomilani rdiaz nuin GeeSharpMinor neils jandot BergmanLab
  • notes A Population Proportion approach for ranking differentially expressed genes
    BMC Bioinformatics, Vol. 9 (18 September 2008), 380.
    by Mugdha Gadgil
    posted to expression algorithm by chrisamiller on 2008-09-25 00:05:41 as **
  • Comprehensive analysis of affymetrix exon arrays using BioConductor.
    PLoS computational biology, Vol. 4, No. 2. (February 2008)
    by MJ Okoniewski, CJ Miller
    posted to r expression bioconductor by chrisamiller on 2008-09-10 03:28:36 as read along with 2 people jfr eskay
  • GO PaD: the Gene Ontology Partition Database.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by G Alterovitz, M Xiang, M Mohan, MF Ramoni
    posted to go networks by chrisamiller on 2008-08-30 00:53:09 as *** along with 2 people jfr macavity1g
  • Validation of rice genome sequence by optical mapping
    BMC Genomics, Vol. 8 (15 August 2007), 278.
    by Shiguo Zhou, Michael C Bechner, Mike Place, Chris P Churas, Louise Pape, Sally A Leong, Rod Runnheim, Dan K Forrest, Steve Goldstein, Miron Livny, David C Schwartz
    posted to assembly genomics opticalmapping by chrisamiller on 2008-07-11 18:25:30 as ***
  • Shotgun Optical Maps of the Whole Escherichia coli O157:H7 Genome
    Genome Res., Vol. 11, No. 9. (1 September 2001), pp. 1584-1593.
    by Alex Lim, Eileen T Dimalanta, Konstantinos D Potamousis, Galex Yen, Jennifer Apodoca, Chunhong Tao, Jieyi Lin, Rong Qi, John Skiadas, Arvind Ramanathan, Nicole T Perna, Guy Plunkett, Valerie Burland, Bob Mau, Jeremiah Hackett, Frederick R Blattner, Thomas S Anantharaman, Bhubaneswar Mishra, David C Schwartz
    posted to assembly gaps genomics opticalmapping by chrisamiller on 2008-07-11 18:24:05 as ***
  • The Consensus Coding Sequences of Human Breast and Colorectal Cancers
    Science (7 September 2006), 1133427.
    by Tobias Sjoblom, Sian Jones, Laura D Wood, Williams D Parsons, Jimmy Lin, Thomas Barber, Diana Mandelker, Rebecca J Leary, Janine Ptak, Natalie Silliman, Steve Szabo, Phillip Buckhaults, Christopher Farrell, Paul Meeh, Sanford D Markowitz, Joseph Willis, Dawn Dawson, James K Willson, Adi F Gazdar, James Hartigan, Leo Wu, Changsheng Liu, Giovanni Parmigiani, Ben H Park, Kurtis E Bachman, Nickolas Papadopoulos, Bert Vogelstein, Kenneth W Kinzler, Victor E Velculescu
    posted to breast cancer mutations sequencing tumors by chrisamiller on 2008-06-26 23:29:45 as read along with 19 people and 1 group aalibes bicko jfr tuck balajis nickluscombe rdiaz eisei jackjackjjj vicsta jtaylor emb51 ramensky massivemayhem cerami xingxu mingzhi frohike gwenknight EBI-regulation
  • High-resolution genomic and expression analyses of copy number alterations in breast tumors
    Genes, Chromosomes and Cancer, Vol. 47, No. 6. (2008), pp. 530-542.
    by Peter M Haverty, Jane Fridlyand, Li Li, Gad Getz, Rameen Beroukhim, Scott Lohr, Thomas D Wu, Guy Cavet, Zemin Zhang, John Chant
    posted to acgh algorithm breast cancer expression tumors by chrisamiller on 2008-06-26 22:48:43 as **
  • PADGE: analysis of heterogeneous patterns of differential gene expression.
    Physiol Genomics (9 October 2007)
    by Li Li, Amitabha Chaudhuri, John Chant, Zhijun Tang
    posted to algorithm expression by chrisamiller on 2008-06-26 22:46:22 as **** along with 1 person jyuh
  • Microarray data mining: A novel optimization-based approach to uncover biologically coherent structures
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Meng Tan, Erin Smith, James Broach, Christodoulos Floudas
    posted to algorithm clustering expression go networks by chrisamiller on 2008-06-26 22:43:55 as ** along with 4 people cswinburne jfr GeeSharpMinor jyuh
  • Mapping and sequencing of structural variation from eight human genomes
    Nature, Vol. 453, No. 7191., pp. 56-64.
    by Jeffrey M Kidd, Gregory M Cooper, William F Donahue, Hillary S Hayden, Nick Sampas, Tina Graves, Nancy Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, Alice N Yamada, Peter Tsang, Tera L Newman, Eray Tüzün, Ze Cheng, Heather M Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A Phelps, Molly Weaver, David Saranga, Adrianne Brand, Wei Tao, Erik Gustafson, Kevin Mckernan, Lin Chen, Maika Malig, Joshua D Smith, Joshua M Korn, Steven A Mccarroll, David A Altshuler, Daniel A Peiffer, Michael Dorschner, John Stamatoyannopoulos, David Schwartz, Deborah A Nickerson, James C Mullikin, Richard K Wilson, Laurakay Bruhn, Maynard V Olson, Rajinder Kaul, Douglas R Smith, Evan E Eichler
    posted to esp genomics structural variation by chrisamiller on 2008-06-26 22:35:10 as read along with 18 people and 2 groups matthewsuderman jfr hpaces Ema chad_davis bpb dchughes djkt balicea shikin psique kintoki kaniko aprasad vplagnol maximilianh jyuh skoch3 GeneGo Koch_Lab
  • Biclustering algorithms for biological data analysis: a survey
    IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 1, No. 1. (2004), pp. 24-45.
    by SC Madeira, AL Oliveira
    posted to algorithm biclusters clustering expression by chrisamiller on 2008-06-26 22:33:37 as * along with 7 people tvdbulck librain dps bozdagd ealloza carlk tmmurali
  • Novel patterns of genome rearrangement and their association with survival in breast cancer.
    Genome Res, Vol. 16, No. 12. (December 2006), pp. 1465-1479.
    by J Hicks, A Krasnitz, B Lakshmi, NE Navin, M Riggs, E Leibu, D Esposito, J Alexander, J Troge, V Grubor, S Yoon, M Wigler, K Ye, AL Børresen-Dale, B Naume, E Schlicting, L Norton, T Hägerström, L Skoog, G Auer, S Månér, P Lundin, A Zetterberg
    posted to acgh breast cancer firestorm by chrisamiller on 2008-06-26 22:30:49 as read along with 2 people jfr cerami
  • Breast tumor copy number aberration phenotypes and genomic instability.
    BMC Cancer, Vol. 6 (2006)
    by J Fridlyand, AM Snijders, B Ylstra, H Li, A Olshen, R Segraves, S Dairkee, T Tokuyasu, BM Ljung, AN Jain, J McLennan, J Ziegler, K Chin, S Devries, H Feiler, JW Gray, F Waldman, D Pinkel, DG Albertson
    posted to acgh breast cancer by chrisamiller on 2008-06-26 21:58:32 as *** along with 4 people jfr rdiaz Garamonfok frohike
  • Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing
    Nature Genetics, Vol. 40, No. 6. (27 April 2008), pp. 722-729.
    by Peter J Campbell, Philip J Stephens, Erin D Pleasance, Sarah O'Meara, Heng Li, Thomas Santarius, Lucy A Stebbings, Catherine Leroy, Sarah Edkins, Claire Hardy, Jon W Teague, Andrew Menzies, Ian Goodhead, Daniel J Turner, Christopher M Clee, Michael A Quail, Antony Cox, Clive Brown, Richard Durbin, Matthew E Hurles, Paul AW Edwards, Graham R Bignell, Michael R Stratton, Andrew P Futreal
    posted to breakpoints cancer esp genomics nextgen structural by chrisamiller on 2008-06-26 21:54:22 as *** along with 3 people matthewsuderman jfr caseybrown
  • Network-Based Analysis of Affected Biological Processes in Type 2 Diabetes Models
    PLoS Genetics, Vol. 3, No. 6. (1 June 2007), e96.
    by Manway Liu, Arthur Liberzon, Sek W Kong, Weil R Lai, Peter J Park, Isaac S Kohane, Simon Kasif
    posted to algorithm expression networks by chrisamiller on 2008-06-26 21:50:59 as *** along with 4 people tmmurali zwang ajgentles cabbagezs
  • Revealing targeted therapy for human cancer by gene module maps.
    Cancer research, Vol. 68, No. 2. (15 January 2008), pp. 369-378.
    by DJ Wong, DS Nuyten, A Regev, M Lin, AS Adler, E Segal, MJ van de Vijver, HY Chang
    posted to cancer expression go networks by chrisamiller on 2008-06-26 21:43:01 as **** along with 1 person ptrobajo
  • Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data.
    Nat Genet, Vol. 34, No. 2. (June 2003), pp. 166-176.
    by E Segal, M Shapira, A Regev, D Pe'er, D Botstein, D Koller, N Friedman
    posted to expression networks yeast by chrisamiller on 2008-06-26 21:41:00 as * along with 16 people ealloza orzenil tuck bayesian wnpx tabu koller olympos fishtank dimatura karfunkel roys pkm dragonrez tvdbulck aviad_work
  • Network modeling links breast cancer susceptibility and centrosome dysfunction.
    Nat Genet (7 October 2007)
    by Miguel Angel A Pujana, Jing-Dong J D Han, Lea M M Starita, Kristen N N Stevens, Muneesh Tewari, Jin Sook S Ahn, Gad Rennert, Víctor Moreno, Tomas Kirchhoff, Bert Gold, Volker Assmann, Wael M M Elshamy, Jean-François F Rual, Douglas Levine, Laura S S Rozek, Rebecca S S Gelman, Kristin C C Gunsalus, Roger A A Greenberg, Bijan Sobhian, Nicolas Bertin, Kavitha Venkatesan, Nono Ayivi-Guedehoussou, Xavier Solé, Pilar Hernández, Conxi Lázaro, Katherine L L Nathanson, Barbara L L Weber, Michael E E Cusick, David E E Hill, Kenneth Offit, David M M Livingston, Stephen B B Gruber, Jeffrey D D Parvin, Marc Vidal
    posted to algorithm breast cancer expression networks by chrisamiller on 2008-06-26 21:38:59 as ***** along with 6 people and 1 group jfr ealloza cjeans nedwards jdiezperezj phoenixzxl BioinfoCIPF
  • notes High resolution genomic analysis of sporadic breast cancer using array-based comparative genomic hybridization
    Breast Cancer Research, Vol. 7, No. 6. (2005), pp. R1186-R1198.
    by Tara Naylor, Joel Greshock, Yan Wang, Theresa Colligon, QC Yu, Virginia Clemmer, Tal Zaks, Barbara Weber
    posted to acgh breast cancer celllines tumors by chrisamiller on 2008-06-26 21:36:49 as ***
  • Feedback Circuit among INK4 Tumor Suppressors Constrains Human Glioblastoma Development
    Cancer Cell, Vol. 13, No. 4. (8 April 2008), pp. 355-364.
    by Ruprecht Wiedemeyer, Cameron Brennan, Timothy P Heffernan, Yonghong Xiao, John Mahoney, Alexei Protopopov, Hongwu Zheng, Graham Bignell, Frank Furnari, Webster K Cavenee, William C Hahn, Koichi Ichimura, Peter V Collins, Gerald C Chu, Michael R Stratton, Keith L Ligon, Andrew P Futreal, Lynda Chin
    posted to acgh algorithm cancer expression by chrisamiller on 2008-06-26 21:34:47 as **** along with 1 person crmlab
  • An integrative genomics approach to infer causal associations between gene expression and disease
    Nature Genetics, Vol. 37, No. 7. (19 June 2005), pp. 710-717.
    by Eric E Schadt, John Lamb, Xia Yang, Jun Zhu, Steve Edwards, Debraj Guhathakurta, Solveig K Sieberts, Stephanie Monks, Marc Reitman, Chunsheng Zhang, Pek Y Lum, Amy Leonardson, Rolf Thieringer, Joseph M Metzger, Liming Yang, John Castle, Haoyuan Zhu, Shera F Kash, Thomas A Drake, Alan Sachs, Aldons J Lusis
    posted to expression networks by chrisamiller on 2008-06-26 21:29:16 as ** along with 12 people and 1 group pcahan1 tuck brant ckehl koller giovanni lp2 dejori natstreet jo_davies caseybrown mitko GeschwindLab
  • High expression of lymphocyte-associated genes in node-negative HER2+ breast cancers correlates with lower recurrence rates.
    Cancer Res, Vol. 67, No. 22. (15 November 2007), pp. 10669-10676.
    by G Alexe, GS Dalgin, D Scanfeld, P Tamayo, JP Mesirov, C DeLisi, L Harris, N Barnard, M Martel, AJ Levine, S Ganesan, G Bhanot
    posted to breast cancer clustering expression pca by chrisamiller on 2008-06-26 21:26:59 as **** along with 2 people jfr aviad_work
  • Merging microarray data from separate breast cancer studies provides a robust prognostic test
    BMC Bioinformatics, Vol. 9 (27 February 2008), 125.
    by Lei Xu, Aik C Tan, Raimond L Winslow, Donald Geman
    posted to breast cancer expression genesignature by chrisamiller on 2008-06-26 21:24:27 as *** along with 5 people Zephyrus laral frohike jfr shigepong
  • Variations in DNA elucidate molecular networks that cause disease
    Nature (16 March 2008)
    by Yanqing Chen, Jun Zhu, Pek Y Lum, Xia Yang, Shirly Pinto, Douglas J Macneil, Chunsheng Zhang, John Lamb, Stephen Edwards, Solveig K Sieberts, Amy Leonardson, Lawrence W Castellini, Susanna Wang, Marie-France Champy, Bin Zhang, Valur Emilsson, Sudheer Doss, Anatole Ghazalpour, Steve Horvath, Thomas A Drake, Aldons J Lusis, Eric E Schadt
    posted to expression networks obesity by chrisamiller on 2008-06-26 21:22:53 as ** along with 14 people and 1 group brianb jbsaltz djkt raiyar lp2 jo_davies shikin caseybrown ptrobajo jyuh echinotrix natstreet sanchezbuelna jfr GeneGo
  • Assessing the significance of chromosomal aberrations in cancer: Methodology and application to glioma
    Proceedings of the National Academy of Sciences (6 December 2007), 0710052104.
    by Rameen Beroukhim, Gad Getz, Leia Nghiemphu, Jordi Barretina, Teli Hsueh, David Linhart, Igor Vivanco, Jeffrey C Lee, Julie H Huang, Sethu Alexander, Jinyan Du, Tweeny Kau, Roman K Thomas, Kinjal Shah, Horacio Soto, Sven Perner, John Prensner, Ralph M Debiasi, Francesca Demichelis, Charlie Hatton, Mark A Rubin, Levi A Garraway, Stan F Nelson, Linda Liau, Mischel, Tim F Cloughesy, Matthew Meyerson, Todd A Golub, Eric S Lander, Ingo K Mellinghoff, William R Sellers
    posted to acgh algorithm cancer recurrence by chrisamiller on 2008-06-26 21:12:17 as read along with 5 people and 2 groups srp33 jfr oelemento cerami loopback007 Cancer_Stem_Cells Glioma Reviews
  • High-resolution array-CGH and expression profiling identifies a novel genomic subtype of ER negative breast cancer
    Genome Biology, Vol. 8 (09 October 2007), R215.
    by Suet F Chin, Andrew E Teschendorff, John C Marioni, Yanzhong Wang, Nuno L Barbosa-Morais, Natalie P Thorne, Jose L Costa, Sarah E Pinder, Mark A van de Wiel, Andrew R Green, Ian O Ellis, Peggy L Porter, Simon Tavare, James D Brenton, Bauke Ylstra, Carlos Caldas
    posted to acgh breast cancer subtypes tumors by chrisamiller on 2008-06-26 21:10:19 as read along with 2 people jfr rdiaz
  • A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes
    Cancer Cell, Vol. 10, No. 6. (December 2006), pp. 515-527.
    by Richard M Neve, Koei Chin, Jane Fridlyand, Jennifer Yeh, Frederick L Baehner, Tea Fevr, Laura Clark, Nora Bayani, Jean-Philippe Coppe, Frances Tong
    posted to acgh breast cancer celllines clustering expression subtypes by chrisamiller on 2008-06-26 21:08:43 as read along with 4 people jfr lhonigberg jayster4 jdiezperezj
  • Genomic and transcriptional aberrations linked to breast cancer pathophysiologies.
    Cancer Cell, Vol. 10, No. 6. (December 2006), pp. 529-541.
    by K Chin, S DeVries, J Fridlyand, PT Spellman, R Roydasgupta, WL Kuo, A Lapuk, RM Neve, Z Qian, T Ryder, F Chen, H Feiler, T Tokuyasu, C Kingsley, S Dairkee, Z Meng, K Chew, D Pinkel, A Jain, BM Ljung, L Esserman, DG Albertson, FM Waldman, JW Gray
    posted to acgh breast cancer clustering expression subtypes tumors by chrisamiller on 2008-06-26 21:07:44 as read along with 2 people jfr frohike
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