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carmaus's library [71 articles]

最近录入 carmaus's 文献库.
  • Ab initio RNA folding by discrete molecular dynamics: From structure prediction to folding mechanisms
    RNA, Vol. 14, No. 6. (1 June 2008), pp. 1164-1173.
    by Feng Ding, Shantanu Sharma, Poornima Chalasani, Vadim V Demidov, Natalia E Broude, Nikolay V Dokholyan
    posted to rna moleculardynamics folding by carmaus on 2008-06-07 16:16:54 as ** along with 1 person Hosna
  • Parallel DEVS: a parallel, hierarchical, modular, modeling formalism
    (1994), pp. 716-722.
    by Alex C Chow, Bernard P Zeigler
    posted to devs discrete modeling simulation by carmaus on 2008-03-05 10:36:48 as **
  • Theory of Modeling and Simulation
    (10 January 2000)
    by Bernard P Zeigler, Herbert Praehofer, Tag G Kim
    posted to devs discrete modeling simulation by carmaus on 2008-03-04 08:30:28 as ** along with 5 people and 3 groups lop cedricboidin harald dagmar mingguo dIEMoSIRIS SIG compneur
  • Towards DEVS Meta Language
    (2006), pp. 69-73.
    by Vladimír Janoušek, Petr Polášek, Pavel Slavíček
    posted to devs devsml xml by carmaus on 2008-02-27 10:38:12 as ** along with 1 person dagmar
  • DFG Research Training Group 1387/1: dIEM oSiRiS - Integrative Development of Modelling and Simulation Methods for Regenerative Systems
    it - Information Technology, Vol. 49, No. 6. (2007), pp. 388-395.
    by Adelinde M Uhrmacher, Arndt Rolfs, Jana Frahm
    posted to diemosiris grk by carmaus on 2008-02-27 10:31:03 as ** along with 1 person dagmar
  • O'Reillys Kochbuch für Geeks
    by Mela Eckenfels, Petra Hildebrandt
    posted to fun non-scientific by carmaus on 2007-11-05 07:18:58 as **
  • Discrete event modelling and simulation in systems biology
    Journal of Simulation, Vol. 1 (2007), pp. 81-96.
    by Roland Ewald, Carsten Maus, Arndt Rolfs, Adelinde Uhrmacher
    posted to discrete gillespie modeling simulation systems_biology by carmaus on 2007-10-20 09:48:46 as read along with 1 person and 2 groups dagmar dIEMoSIRIS compneur
  • Introducing variable ports and multi-couplings for cell biological modeling in DEVS
    (2006), pp. 832-840.
    by Adelinde M Uhrmacher, Jan Himmelspach, Mathias Röhl, Roland Ewald
    posted to devs wsc by carmaus on 2007-10-20 09:41:46 as read
  • UML vs. classical vs. rhapsody statecharts: not all models are created equal
    Software and Systems Modeling, Vol. 6 (2007)
    by Michelle L Crane, Juergen Dingel
    posted to statecharts uml by carmaus on 2007-10-18 08:49:03 as ** along with 1 person leonardo
  • A composability lexicon
    Proceedings of the Spring 2003 Simulation Interoperability Workshop (2003), pp. 181-187.
    by MD Petty, EW Weisel
    posted to composability composition interoperability by carmaus on 2007-08-29 16:05:54 as **** along with 2 groups dIEMoSIRIS MoSi-Rostock
  • Towards Reusing Model Components in Systems Biology
    Computational Methods in Systems Biology (2005), pp. 192-206.
    by Adelinde M Uhrmacher, Daniela Degenring, Jens Lemcke, Mario Krahmer
    posted to composition systems_biology xml by carmaus on 2007-08-27 13:44:43 as read along with 2 people and 3 groups dagmar csgillespie dIEMoSIRIS MoSi-Rostock compneur
  • A Specification Language and a Framework for the Execution of Composite Models in Systems Biology
    Lecture Notes In Computer Science:Transactions on Computational Systems Biology VII, Vol. 4230 (2006), pp. 163-184.
    by Ofer Margoninski, Peter Saffrey, James Hetherington, Anthony Finkelstein, Anne Warner
    posted to composition modeling modularity systems_biology xml by carmaus on 2007-08-03 08:46:51 as read along with 3 people and 3 groups wnpx krissp dagmar dIEMoSIRIS MoSi-Rostock compneur
  • A Multi-Formalism Modeling Composability Framework: Agent and Discrete-Event Models
    (2005), pp. 249-256.
    by Hessam Sarjoughian, Dongping Huang
    posted to agents composition modeling modularity multi-formalism by carmaus on 2007-08-02 08:31:14 as read along with 1 person and 2 groups krissp dIEMoSIRIS MoSi-Rostock
  • Addressing the challenges of multiscale model management in systems biology
    Computers & Chemical Engineering, Vol. 31, No. 8. (15 August 2007), pp. 962-979.
    by J Hetherington, IDL Bogle, P Saffrey, O Margoninski, L Li, Varela M Rey, S Yamaji, S Baigent, J Ashmore, K Page, RM Seymour, A Finkelstein, A Warner
    posted to model model_management multi-scale by carmaus on 2007-08-01 10:43:48 as ** along with 1 person and 3 groups dagmar dIEMoSIRIS MoSi-Rostock compneur
  • Alternative signaling pathways: When, where and why?
    FEBS Letters, Vol. 579, No. 24. (10 October 2005), pp. 5265-5274.
    by Yunchen Gong, Zhaolei Zhang
    posted to signaling specificity by carmaus on 2007-07-31 08:08:05 as ** along with 1 person and 2 groups arne dIEMoSIRIS MoSi-Rostock
  • Model composability: formulating a research thrust: composable simulations
    (2000), pp. 1577-1584.
    by Stephen Kasputis, Henry C Ng
    posted to composition modeling modularity simulation by carmaus on 2007-07-30 09:09:33 as ** along with 2 people and 2 groups krissp Scis0000002 dIEMoSIRIS MoSi-Rostock
  • Architectural mismatch or why it's hard to build systems out of existing parts
    (1995), pp. 179-185.
    by David Garlan, Robert Allen, John Ockerbloom
    posted to composition engineering modularity by carmaus on 2007-07-30 09:03:07 as ** along with 11 people and 3 groups ingstrup hamish lfk jolilius fachri bfraser ddahlem krissp RalfMitschke buchgeher gvdh TUCS-ES_Lab dIEMoSIRIS MoSi-Rostock
  • Stochastic simulation of chemical kinetics.
    Annu Rev Phys Chem, Vol. 58 (2007), pp. 35-55.
    by DT Gillespie
    posted to langevin_equation master_equation stiff_systems tau-leaping by carmaus on 2007-07-30 08:29:59 as ** along with 3 people and 3 groups jjray dbikard pmendes Centre de Recherches Interdisciplinaires dIEMoSIRIS MoSi-Rostock
  • Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell.
    Curr Opin Cell Biol, Vol. 15, No. 2. (April 2003), pp. 221-231.
    by JJ Tyson, KC Chen, B Novak
    posted to dynamic modularity ode pathways by carmaus on 2007-07-30 07:44:18 as ** along with 5 people and 5 groups camster rklancer monod rhem1224 bayesian dbk-lab TCR_Signaling SysbioMPI-TCells dIEMoSIRIS MoSi-Rostock
  • notes little b - a language for modular, shareable models of biological systems
    (2004)
    by A Mallavarapu, J Gunawardena
    posted to littleb modularity virtual_cell by carmaus on 2007-07-25 16:42:13 as read along with 2 groups dIEMoSIRIS MoSi-Rostock
  • notes Systems biology: its practice and challenges.
    Cell, Vol. 121, No. 4. (20 May 2005), pp. 511-513.
    by A Aderem
    posted to commentary modularity systems_biology by carmaus on 2007-07-25 12:46:13 as read along with 3 people and 2 groups LeightonP wnpx biosv dIEMoSIRIS MoSi-Rostock
  • A multi-algorithm, multi-timescale method for cell simulation.
    Bioinformatics, Vol. 20, No. 4. (1 March 2004), pp. 538-546.
    by K Takahashi, K Kaizu, B Hu, M Tomita
    posted to hybrid modeling multi-algorithm multi-level multi-timescale simulation by carmaus on 2007-07-19 10:10:17 as **** along with 4 people and 3 groups csanford chrn dagmar lenov dIEMoSIRIS MoSi-Rostock compneur
  • Applying Petri Nets to Systems Biology using XML Technologies
    (March 2004)
    by Oliver Shaw, Albert Koelmans, Jason Steggles, Anil Wipat
    posted to bioinformatics petrinets pnml sbml sysbio xml by carmaus on 2007-07-18 15:50:41 as ** along with 1 person and 3 groups dagmar dIEMoSIRIS MoSi-Rostock compneur
  • Noise-Induced Min Phenotypes in E. coli
    PLoS Computational Biology, Vol. 2, No. 6. (1 June 2006), e80.
    by David Fange, Johan Elf
    posted to example model nsm by carmaus on 2007-07-17 15:11:58 as ** along with 2 groups dIEMoSIRIS MoSi-Rostock
  • FluxAnalyzer: exploring structure, pathways, and flux distributions in metabolic networks on interactive flux maps.
    Bioinformatics, Vol. 19, No. 2. (22 January 2003), pp. 261-269.
    by S Klamt, J Stelling, M Ginkel, ED Gilles
    posted to stoichiometry sysbio by carmaus on 2007-07-13 10:03:25 as ** along with 2 people and 2 groups alexg balicea dIEMoSIRIS MoSi-Rostock
  • cPath: open source software for collecting, storing, and querying biological pathways
    BMC Bioinformatics, Vol. 7 (13 November 2006), 497.
    by Ethan G Cerami, Gary D Bader, Benjamin Gross, Chris Sander
    posted to data pathways by carmaus on 2007-07-10 14:59:30 as ** along with 5 people and 2 groups AlexanderPico jfr dquest bootsy cerami dIEMoSIRIS MoSi-Rostock
  • UML as a cell and biochemistry modeling language.
    Biosystems, Vol. 80, No. 3. (June 2005), pp. 283-302.
    by K Webb, T White
    posted to biochemical modeling uml by carmaus on 2007-07-10 14:57:47 as ** along with 3 people and 6 groups wigelius dalloliogm angelika12 HCI-IHTE-TUT Web2 splicing yeast dIEMoSIRIS MoSi-Rostock
  • Dynamic Models in Biology
    (27 March 2006)
    by Stephen P Ellner, John Guckenheimer
    posted to dynamic modeling sysbio by carmaus on 2007-07-06 10:58:30 as ** along with 2 groups dIEMoSIRIS MoSi-Rostock
  • Individual-based Modeling and Ecology (Princeton Series in Theoretical and Computational Biology)
    (05 July 2005)
    by Volker Grimm, Steven F Railsback
    posted to agents modeling by carmaus on 2007-07-06 10:47:05 as ** along with 2 people and 3 groups spirit_of_numenor larios ComplexAdaptiveSystems dIEMoSIRIS MoSi-Rostock
  • Predictive Modeling of Signaling Crosstalk during C. elegans Vulval Development
    PLoS Computational Biology, Vol. 3, No. 5. (1 May 2007), e92.
    by Jasmin Fisher, Nir Piterman, Alex Hajnal, Thomas A Henzinger
    posted to crosstalk modeling signaling by carmaus on 2007-06-20 08:50:32 as read along with 3 people and 2 groups kristgy roland_ewald ajgentles dIEMoSIRIS MoSi-Rostock
  • The role of composition and aggregation in modeling macromolecular regulatory networks
    (2006), pp. 1628-1636.
    by Clifford A Shaffer, Ranjit Randhawa, John J Tyson
    posted to aggregation composition model by carmaus on 2007-06-08 15:14:36 as ** along with 1 person and 2 groups krissp dIEMoSIRIS MoSi-Rostock
  • Ten top reasons for systems biology to get into model-driven engineering
    (2006), pp. 55-58.
    by Magali Roux-Rouquié, Debora S da Rosa
    posted to mde sysbio by carmaus on 2007-06-08 15:09:20 as read along with 1 person and 2 groups wnpx dIEMoSIRIS MoSi-Rostock
  • Mathematical models of protein kinase signal transduction.
    Mol Cell, Vol. 9, No. 5. (May 2002), pp. 957-970.
    by R Heinrich, BG Neel, TA Rapoport
    posted to kinase mathematical model signaling by carmaus on 2007-06-06 09:42:58 as ** along with 2 groups dIEMoSIRIS MoSi-Rostock
  • Amplification and adaptation in regulatory and sensory systems.
    Science, Vol. 217, No. 4556. (16 July 1982), pp. 220-225.
    by DE Koshland, A Goldbeter, JB Stock
    posted to amplification regulating signaling by carmaus on 2007-06-06 09:32:57 as ** along with 1 person and 2 groups balicea dIEMoSIRIS MoSi-Rostock
  • Modeling and simulation of mobile agents
    Future Generation Computer Systems, Vol. 17, No. 2. (October 2000), pp. 107-118.
    by Adelinde M Uhrmacher, Petra Tyschler, Dirk Tyschler
    posted to agents modeling simulation by carmaus on 2007-06-01 07:59:10 as ** along with 1 person and 2 groups roland_ewald dIEMoSIRIS MoSi-Rostock
  • Computational Systems Biology
    (25 October 2005)
    by Andres Kriete, Roland Eils
    posted to book sysbio by carmaus on 2007-05-24 09:31:58 as ** along with 1 person and 2 groups fishtank dIEMoSIRIS MoSi-Rostock
  • Biomolecular Agents as Multi-behavioural Concurrent Objects
    Electronic Notes in Theoretical Computer Science, Vol. 150, No. 1. (9 March 2006), pp. 31-49.
    by Denys Duchier, Celine Kuttler
    posted to agents modeling pi-calculus sysbio by carmaus on 2007-05-24 09:20:32 as **** along with 1 person and 2 groups roland_ewald dIEMoSIRIS MoSi-Rostock
  • Building functional modules from molecular interactions
    Trends in Biochemical Sciences, Vol. 31, No. 9. (September 2006), pp. 497-508.
    by Klaus P Hofmann, Christian M Spahn, Reinhart Heinrich, Udo Heinemann
    posted to modularity sysbio by carmaus on 2007-05-24 09:04:48 as read along with 1 person and 2 groups karfunkel dIEMoSIRIS MoSi-Rostock
  • Beta-binders for Biological Quantitative Experiments
    Electronic Notes in Theoretical Computer Science, Vol. 164, No. 3. (26 October 2006), pp. 101-117.
    by P Degano, D Prandi, C Priami, P Quaglia
    posted to beta-binders modeling quantitative by carmaus on 2007-05-24 08:58:10 as *** along with 2 groups dIEMoSIRIS MoSi-Rostock
  • Power-law models of signal transduction pathways
    Cellular Signalling, Vol. In Press, Corrected Proof
    by Julio Vera, Eva Balsa-Canto, Peter Wellstead, Julio R Banga, Olaf Wolkenhauer
    posted to modeling signaling by carmaus on 2007-05-24 08:50:46 as *** along with 2 groups dIEMoSIRIS MoSi-Rostock
  • On Process Rate Semantics
    by Luca Cardelli
    posted to modeling pi-calculus by carmaus on 2007-05-22 09:09:26 as ** along with 1 person and 2 groups mattis23 dIEMoSIRIS MoSi-Rostock
  • DEVS-Based Dynamic Model Reconfiguration and Simulation Control in the Enhanced DoDAF Design Process
    Journal of Defense Modeling and Simulation, Vol. 3, No. 4. (October 2006), pp. 239-267.
    by S Mittal, E Mak, JJ Nutaro
    posted to devs modeling multi-level simulation by carmaus on 2007-05-22 08:45:12 as ** along with 1 person and 2 groups roland_ewald dIEMoSIRIS MoSi-Rostock
  • Dynamic structures in modeling and simulation: a reflective approach
    ACM Trans. Model. Comput. Simul., Vol. 11, No. 2. (April 2001), pp. 206-232.
    by AM Uhrmacher
    posted to devs dynamic dyndevs by carmaus on 2007-05-14 09:14:47 as ** along with 1 person and 2 groups wangyongfeng dIEMoSIRIS MoSi-Rostock
  • Hybrid modeling and simulation of biomolecular networks
    Hybrid Systems: Computation and Control, Vol. 2034 (2001), pp. 19-32.
    by R Alur, C Belta, F Ivancic, V Kumar, M Mintz, GJ Pappas, H Rubin, J Schug
    posted to hybrid modeling simulation by carmaus on 2007-05-07 09:12:51 as *** along with 2 groups dIEMoSIRIS MoSi-Rostock
  • ICAT inhibits beta-catenin binding to Tcf/Lef-family transcription factors and the general coactivator p300 using independent structural modules.
    Mol Cell, Vol. 10, No. 3. (September 2002), pp. 573-584.
    by DL Daniels, WI Weis
    posted to beta-catenin icat tcf wnt by carmaus on 2007-04-25 13:59:28 as read along with 2 groups dIEMoSIRIS MoSi-Rostock
  • Automatic Parameterisation of Stochastic Petri Net Models of Biological Networks
    Electron. Notes Theor. Comput. Sci, Vol. 151 (2006), pp. 111-129.
    by OJ Shaw, LJ Steggles, A Wipat
    posted to automated parameter_estimation petrinets stochastic by carmaus on 2007-04-24 15:33:05 as read along with 2 groups dIEMoSIRIS MoSi-Rostock
  • The APC tumor suppressor counteracts beta-catenin activation and H3K4 methylation at Wnt target genes.
    Genes Dev, Vol. 20, No. 5. (1 March 2006), pp. 586-600.
    by J Sierra, T Yoshida, CA Joazeiro, KA Jones
    posted to apc beta-catenin nucleus wnt by carmaus on 2007-04-18 12:57:06 as ** along with 2 groups dIEMoSIRIS MoSi-Rostock
  • Wnt signaling: is the party in the nucleus?
    Genes Dev., Vol. 20, No. 11. (1 June 2006), pp. 1394-1404.
    by Karl Willert, Katherine A Jones
    posted to beta-catenin nucleus review signaling wnt by carmaus on 2007-04-18 08:39:26 as read along with 1 person and 2 groups emmahe dIEMoSIRIS MoSi-Rostock
  • Space in systems biology of signaling pathways - towards intracellular molecular crowding in silico
    FEBS Letters, Vol. 579, No. 8. (21 March 2005), pp. 1783-1788.
    by Kouichi Takahashi, Satya NV Arjunan, Masaru Tomita
    posted to modeling space spatial sysbio by carmaus on 2007-04-15 18:46:52 as ** along with 7 people and 3 groups csanford m_j monocyte biplabbose chrn biosv dagmar dIEMoSIRIS MoSi-Rostock compneur
  • Automated modelling of signal transduction networks.
    BMC Bioinformatics, Vol. 3 (1 November 2002)
    by M Steffen, A Petti, J Aach, P D'haeseleer, G Church
    posted to automated modeling networks by carmaus on 2007-04-15 17:47:51 as ** along with 3 people and 3 groups kentsis lfriedl iris_2001 kdl dIEMoSIRIS MoSi-Rostock
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