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caporaso's library [303 articles]

最近录入 caporaso's 文献库.
  • The Rough Guide to Climate Change 1 (Rough Guide Reference)
    (30 October 2006)
    by Robert Henson
    posted to no-tag by caporaso on 2007-04-27 13:45:58 as ** along with 1 group biomedical-nlp
  • Lonesome George : The Life and Loves of a Conservation Icon
    (04 April 2006)
    by Henry Nicholls
    posted to conservation by caporaso on 2007-04-27 13:45:11 as ***** along with 3 people and 2 groups dayjm cmm Fin FAB-lab biomedical-nlp
  • A Quarter Century of UNIX (Addison-Wesley UNIX and Open Systems Series)
    (31 May 1994)
    by Peter H Salus
    posted to cs unix by caporaso on 2007-04-18 01:12:09 as ** along with 1 group biomedical-nlp
  • Automatic Extraction of Protein Point Mutations Using a Graph Bigram Association
    PLoS Computational Biology, Vol. 3, No. 2. (1 February 2007), e16.
    by Lawrence C Lee, Florence Horn, Fred E Cohen
    posted to mutation nlp by caporaso on 2007-04-17 17:36:43 as read along with 2 people and 2 groups aalibes yas T_lab biomedical-nlp
  • Text-mining and information-retrieval services for molecular biology.
    Genome Biol, Vol. 6, No. 7. (2005)
    by M Krallinger, A Valencia
    posted to bioinformatics nlp by caporaso on 2007-04-17 03:53:19 as **** along with 8 people and 6 groups spinaltap526 irenas Enro carlblesius textoris yas shimah78us cjeans dbk-lab Blog_and_Wiki_Research mgh-lcs hst-bmi T_lab biomedical-nlp
  • Is cross-validation better than resubstitution for ranking genes?
    Bioinformatics, Vol. 20, No. 2. (22 January 2004), pp. 253-258.
    by Ulisses Braga-Neto, Ronaldo Hashimoto, Edward R Dougherty, Danh V Nguyen, Raymond J Carroll
    posted to bioinformatics cross-validation by caporaso on 2007-03-30 15:10:25 as ** along with 2 people and 1 group chad_davis rdiaz biomedical-nlp
  • Is cross-validation valid for small-sample microarray classification?
    Bioinformatics, Vol. 20, No. 3. (12 February 2004), pp. 374-380.
    by Ulisses M Braga-Neto, Edward R Dougherty
    posted to bioinformatics cross-validation by caporaso on 2007-03-30 15:08:04 as ** along with 3 people and 1 group chad_davis sdvillal sampath biomedical-nlp
  • Bolstered Error Estimation
    by Ulisses B Neto, Edward Dougherty
    posted to cross-validation machine-learning by caporaso on 2007-03-30 14:53:27 as ***** along with 1 group biomedical-nlp
  • No Unbiased Estimator of the Variance of K-Fold Cross-Validation
    J. Mach. Learn. Res., Vol. 5 (2004), pp. 1089-1105.
    by Yoshua Bengio, Yves Grandvalet
    posted to cross-validation machine-learning by caporaso on 2007-03-27 23:10:46 as **** along with 1 group biomedical-nlp
  • Inference for the Generalization Error
    Mach. Learn., Vol. 52, No. 3. (September 2003), pp. 239-281.
    by Claude Nadeau, Yoshua Bengio
    posted to cross-validation machine-learning by caporaso on 2007-03-27 23:09:40 as ** along with 1 person and 1 group sdvillal biomedical-nlp
  • Inference for the generalization error
    (2000)
    by C Nadeau, Y Bengio
    posted to cross-validation machine-learning by caporaso on 2007-03-27 23:08:52 as ** along with 2 people and 1 group davidr gyuli biomedical-nlp
  • The Estimation of Prediction Error: Covariance Penalties and Cross-Validation
    Journal of the American Statistical Association, Vol. 99, No. 467. (September 2004), pp. 619-632.
    by Bradley Efron
    posted to cross-validation machine-learning by caporaso on 2007-03-27 23:07:28 as ** along with 2 groups biomedical-nlp UCSD_Economics
  • No unbiased estimator of the variance of K-fold cross-validation
    (2003)
    by Y Bengio, Y Grandvalet
    posted to cross-validation machine-learning by caporaso on 2007-03-27 23:02:09 as ** along with 1 group biomedical-nlp
  • Cross-validation and the bootstrap: Estimating the error rate of a prediction rule
    (1995)
    by B Efron, R Tibshirani
    posted to cross-validation machine-learning by caporaso on 2007-03-27 22:58:50 as ** along with 2 people and 1 group chad_davis skrofej biomedical-nlp
  • Prediction error estimation: a comparison of resampling methods
    Bioinformatics, Vol. 21, No. 15. (1 August 2005), pp. 3301-3307.
    by Annette M Molinaro, Richard Simon, Ruth M Pfeiffer
    posted to cross-validation data-mining machine-learning statistics by caporaso on 2007-03-19 23:33:34 as ***** along with 1 person and 1 group winterschlaefer biomedical-nlp
  • God: The Failed Hypothesis. How Science Shows That God Does Not Exist
    (25 January 2007)
    by Victor J Stenger
    posted to evolution by caporaso on 2007-03-08 21:17:56 as ** along with 1 group biomedical-nlp
  • Genomic biodiversity, phylogenetics and coevolution in proteins.
    Appl Bioinformatics, Vol. 1, No. 2. (2002), pp. 81-92.
    by DD Pollock
    posted to coevolution by caporaso on 2007-02-26 18:02:10 as ***** along with 1 person and 1 group chrys biomedical-nlp
  • MAFFT version 5: improvement in accuracy of multiple sequence alignment.
    Nucleic Acids Res, Vol. 33, No. 2. (2005), pp. 511-518.
    by K Katoh, K Kuma, H Toh, T Miyata
    posted to alignment sequence by caporaso on 2006-12-08 08:45:07 as ***** along with 3 people and 1 group urgi rabio timflutre biomedical-nlp
  • Structural Genomics
    (2003), pp. 591-612.
    by Stephen K Burley, Jeffrey B Bonanno
    edited by Philip E Bourne, Helge Weissig
    posted to structural-genomics-consortium structure by caporaso on 2006-12-07 17:06:03 as read along with 1 group biomedical-nlp
  • Structural Bioinformatics in Drug Discovery
    (2003), pp. 477-497.
    by Eric B Fauman, Andrew L Hopkins, Colin R Groom
    edited by Philip E Bourne, Helge Weissig
    posted to drug-design druggability structural-biology by caporaso on 2006-12-07 16:46:23 as read along with 1 group biomedical-nlp
  • Structure Comparison and Alignment
    (2003), pp. 321-337.
    by Philip E Bourne, Ilya N Shindyalov
    edited by Philip E Bourne, Helge Weissig
    posted to alignment structural-biology structure by caporaso on 2006-12-07 16:42:32 as read along with 1 group biomedical-nlp
  • Chemical space and biology
    Nature, Vol. 432, No. 7019. (16 December 2004), pp. 824-828.
    by Christopher M Dobson
    posted to chemistry minor-proposal by caporaso on 2006-12-07 01:08:17 as ***** along with 2 people and 3 groups kuhn marcius biomedical-nlp BioinfoCIPF SGU-CIPF
  • Methods for the prediction of protein-ligand binding sites for structure-based drug design and virtual ligand screening.
    Curr Protein Pept Sci, Vol. 7, No. 5. (October 2006), pp. 395-406.
    by AT Laurie, RM Jackson
    posted to drug-design minor-proposal by caporaso on 2006-12-06 19:26:00 as ***** along with 1 group biomedical-nlp
  • Biochemistry, Fifth Edition : International Version
    (15 February 2002)
    by Jeremy M Berg, John L Tymoczko, Lubert Stryer
    posted to biochem by caporaso on 2006-12-05 05:10:40 as read along with 3 people and 2 groups dherkova ujh paolo Bioinformatics biomedical-nlp
  • BioCreAtIvE task 1A: gene mention finding evaluation.
    BMC Bioinformatics, Vol. 6 Suppl 1 (2005)
    by A Yeh, A Morgan, M Colosimo, L Hirschman
    posted to biomedical nlp by caporaso on 2006-12-04 05:35:49 as ***** along with 4 people and 2 groups yas helliontroy zlu johnkork T_lab biomedical-nlp
  • Concept Recognition, Information Retrieval, and Machine Learning in Genomics Question-Answering
    (2006)
    by Gregory J Caporaso, William A Baumgartner, Hyunmin Kim, Zhiyong Lu, Helen L Johnson, Olga Medvedeva, Anna Lindemann, Lynne M Fox, Elizabeth K White, Bretonnel K Cohen, Lawrence Hunter
    posted to biomedical data-mining hunter-lab nlp by caporaso on 2006-12-04 05:00:33 as ** along with 1 person and 1 group helliontroy biomedical-nlp
  • TREC 2006 Genomics Track Overview
    (2006)
    by William Hersh, Aaron M Cohen, Phoebe Roberts, Hari K Rekapalli
    posted to biomedical data-mining nlp by caporaso on 2006-12-04 04:52:51 as read along with 1 group biomedical-nlp
  • Using information theory to search for co-evolving residues in proteins.
    Bioinformatics, Vol. 21, No. 22. (15 November 2005), pp. 4116-4124.
    by LC Martin, GB Gloor, SD Dunn, LM Wahl
    posted to bioi7712 coevolution compensatory comps information-theory major-proposal by caporaso on 2006-11-30 19:02:02 as read along with 4 people and 1 group bioinfo rabio rsantana cjeans biomedical-nlp
  • Structure-Based Identification of Small Molecule Binding Sites Using a Free Energy Model.
    J Chem Inf Model, Vol. 46, No. 6. (27 November 2006), pp. 2631-2637.
    by Ryan G Coleman, Anna C Salzberg, Alan C Cheng
    posted to coevolution druggability by caporaso on 2006-11-30 04:20:19 as **** along with 2 people and 1 group tjimenez cjeans biomedical-nlp
  • FlyBase: anatomical data, images and queries.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by G Grumbling, V Strelets
    posted to comps database genomics major-proposal by caporaso on 2006-11-28 23:20:33 as ** along with 1 person and 1 group cmor biomedical-nlp
  • MUSCLE: a multiple sequence alignment method with reduced time and space complexity.
    BMC Bioinformatics, Vol. 5, No. 1. (19 August 2004)
    by RC Edgar
    posted to compare comps evolution major-proposal sequence by caporaso on 2006-11-13 20:28:08 as ***** along with 13 people and 3 groups Ema sanchezbuelna wallacei knaseanka chrn jwm balajis gbart sriram_s cdallett timflutre gisle urgi Radiation_Damage Stressosome biomedical-nlp
  • Residue coevolution: Modeling and interpretation
    (August 2006)
    by Zhengyuan Wang
    posted to coevolution compensatory comps major-proposal by caporaso on 2006-11-11 00:44:42 as ***** along with 1 group biomedical-nlp
  • Sarcomeric Proteins and Familial Hypertrophic Cardiomyopathy: Linking Mutations in Structural Proteins to Complex Cardiovascular Phenotypes
    Heart Failure Reviews, Vol. 10, No. 3. (September 2005), pp. 237-248.
    by Jil Tardiff
    posted to comps major-proposal myosin by caporaso on 2006-11-11 00:39:35 as ***** along with 1 group biomedical-nlp
  • Context dependence and coevolution among amino acid residues in proteins.
    Methods Enzymol, Vol. 395 (2005), pp. 779-790.
    by ZO Wang, DD Pollock
    posted to coevolution major-proposal protein by caporaso on 2006-11-08 15:08:49 as ***** along with 1 group biomedical-nlp
  • Effectiveness of correlation analysis in identifying protein residues undergoing correlated evolution.
    Protein Eng, Vol. 10, No. 6. (June 1997), pp. 647-657.
    by DD Pollock, WR Taylor
    posted to coevolution compensatory major-proposal mutation by caporaso on 2006-11-08 01:01:53 as ***** along with 1 person and 1 group friendpine biomedical-nlp
  • Why are some human disease-associated mutations fixed in mice?
    Trends Genet, Vol. 19, No. 12. (December 2003), pp. 678-681.
    by L Gao, J Zhang
    posted to compensatory evolution major-proposal mutation by caporaso on 2006-11-07 17:29:36 as read along with 1 person and 1 group bpcusack biomedical-nlp
  • The Role of Compensatory Mutations in the Emergence of Drug Resistance.
    PLoS Comput Biol, Vol. 2, No. 10. (13 October 2006)
    by Andreas Handel, Roland R R Regoes, Rustom Antia
    posted to compensatory major-proposal mutation by caporaso on 2006-10-29 22:56:02 as ***** along with 1 person and 1 group ramensky biomedical-nlp
  • Characterization of Compensated Mutations in Terms of Structural and Physico-Chemical Properties.
    J Mol Biol (26 September 2006)
    by Carles Ferrer-Costa, Modesto Orozco, Xavier de la D Cruz
    posted to compensatory major-proposal mutation by caporaso on 2006-10-29 22:54:53 as ***** along with 3 people and 2 groups ramensky cat_worth cjeans structural_bioinformatics biomedical-nlp
  • Relevance based language models
    (2001), pp. 120-127.
    by Victor Lavrenko, Bruce W Croft
    posted to information-retrieval nlp by caporaso on 2006-10-25 02:14:46 as ** along with 7 people and 3 groups iansimon codex jelsas arjen ejmeij abellogin spinaltap526 biomedical-nlp ilps LanguageModeling
  • Zone Identification in Biology Articles as a Basis for Information Extraction
    (2004), pp. 29-35.
    by Y Mizuta, N Collier
    posted to nlp zone by caporaso on 2006-10-25 00:30:26 as ** along with 1 group biomedical-nlp
  • A baseline feature set for learning rhetorical zones using full articles in the biomedical domain
    SIGKDD Explor. Newsl., Vol. 7, No. 1. (June 2005), pp. 52-58.
    by Tony Mullen, Yoko Mizuta, Nigel Collier
    posted to nlp zone by caporaso on 2006-10-25 00:27:30 as ** along with 2 people and 2 groups yas helliontroy T_lab biomedical-nlp
  • Rule-based extraction of experimental evidence in the biomedical domain: the KDD Cup 2002 (task 1)
    SIGKDD Explor. Newsl., Vol. 4, No. 2. (December 2002), pp. 90-92.
    by Yizhar Regev, Michal Finkelstein-Landau, Ronen Feldman
    posted to nlp zone by caporaso on 2006-10-25 00:26:05 as ** along with 2 people and 2 groups yas balicea T_lab biomedical-nlp
  • Direct memory access parsing.
    (1990)
    by Charles E Martin
    posted to dmap by caporaso on 2006-10-25 00:20:40 as ** along with 1 group biomedical-nlp
  • Building embedded conceptual parsers.
    (1995)
    by Will Fitzgerald
    posted to dmap by caporaso on 2006-10-25 00:15:29 as ** along with 1 group biomedical-nlp
  • From conceptual analyzer to Direct Memory Access Parsing: an overview.
    (1986)
    by Christopher K Riesbeck
    edited by NE Sharkey
    posted to dmap by caporaso on 2006-10-25 00:13:24 as ** along with 1 group biomedical-nlp
  • Model-based feedback in the language modeling approach to information retrieval
    (2001), pp. 403-410.
    by Chengxiang Zhai, John Lafferty
    posted to information-retrieval by caporaso on 2006-10-24 22:49:46 as ** along with 6 people and 3 groups kevynct lfriedl ejmeij vitalaswp4 pprett abellogin biomedical-nlp ilps LanguageModeling
  • Experiments Using the Lemur Toolkit
    (2001)
    by Paul Ogilvie, James P Callan
    posted to information-retrieval by caporaso on 2006-10-24 22:49:08 as ** along with 1 group biomedical-nlp
  • Direct Memory Access Parsing
    Yale University Report, Vol. 354 (1985)
    by C Riesbeck, C Martin
    posted to dmap by caporaso on 2006-10-24 20:06:34 as **** along with 1 group biomedical-nlp
  • Language Understanding is Recognition, Not Construction
    Psycoloquy, Vol. 5, No. 38. (1994)
    by Christopher K Riesbeck, Will Fitzgerald
    posted to dmap by caporaso on 2006-10-24 20:02:50 as **** along with 1 group biomedical-nlp
  • Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
    Nat Genet, Vol. 25, No. 1. (May 2000), pp. 25-29.
    by M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock
    posted to bioinformatics nlp by caporaso on 2006-10-24 19:09:35 as read along with 34 people and 6 groups fongenae rvosa roys dgront marck carlk pablomendes CitoJam aalibes miguel dragonrez lfriedl chad_davis yas balajis indigoviolet benny dullhunk nirfriedman fisherp helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele FAB-lab kdl Bioinformatics EisenLab T_lab biomedical-nlp
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