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cactus's protein [35 articles]

当前文献位于 cactus's 文献库 标签分类为 protein. You can also see everyone's protein.
  • Entropic contributions and the influence of the hydrophobic environment in promiscuous protein-protein association
    Proceedings of the National Academy of Sciences, Vol. 105, No. 21. (27 May 2008), pp. 7456-7461.
    by Chia-En A Chang, William A Mclaughlin, Riccardo Baron, Wei Wang, Andrew J Mccammon
    posted to simulation protein fullatom binding by cactus on 2008-06-19 09:10:36 as ** along with 1 person higueruelo
  • Protein folding: Independent unrelated pathways or predetermined pathway with optional errors
    Proceedings of the National Academy of Sciences, Vol. 105, No. 20. (20 May 2008), pp. 7182-7187.
    by Sabrina Bedard, Mallela M Krishna, Leland Mayne, Walter S Englander
    posted to protein pathway folding experiment by cactus on 2008-06-19 06:51:57 as ** along with 1 person apaydin
  • Monitoring Protein Conformation along the Pathway of Chaperonin-Assisted Folding
    Cell, Vol. 133, No. 1. (4 April 2008), pp. 142-153.
    by Shruti Sharma, Kausik Chakraborty, Barbara K Muller, Nagore Astola, Yun-Chi Tang, Don C Lamb, Manajit Hayer-Hartl, Ulrich F Hartl
    posted to protein groel fret folding experiment by cactus on 2008-05-14 07:28:04 as ** along with 1 person rph
  • Kemp elimination catalysts by computational enzyme design
    Nature (19 March 2008)
    by Daniela Röthlisberger, Olga Khersonsky, Andrew M Wollacott, Lin Jiang, Jason Dechancie, Jamie Betker, Jasmine L Gallaher, Eric A Althoff, Alexandre Zanghellini, Orly Dym, Shira Albeck, Kendall N Houk, Dan S Tawfik, David Baker
    posted to protein enzyme design clip2 by cactus on 2008-05-08 12:06:27 as ** along with 5 people and 1 group sobolevnrm austin neils jwm msuarezdiez baker-group
  • Dynamic binding orientations direct activity of HIV reverse transcriptase
    Nature, Vol. 453, No. 7192. (May 2008), pp. 184-189.
    by Elio A Abbondanzieri, Gregory Bokinsky, Jason W Rausch, Jennifer X Zhang, Stuart F Le Grice, Xiaowei Zhuang
    posted to protein function clip2 by cactus on 2008-05-08 12:05:28 as ** along with 2 people and 1 group kieran101 wsjames Oxford Virology
  • Modeling transient collapsed states of an unfolded protein to provide insights into early folding events
    Proceedings of the National Academy of Sciences, Vol. 105, No. 17. (29 April 2008), pp. 6278-6283.
    by Daniel J Felitsky, Michael A Lietzow, Jane H Dyson, Peter E Wright
    posted to spin protein nmr folding experiment clip2 by cactus on 2008-05-07 08:23:51 as **
  • Minimalist Protein Model as a Diagnostic Tool for Misfolding and Aggregation
    Journal of Molecular Biology, Vol. 363, No. 1. (13 October 2006), pp. 297-308.
    by Silvina Matysiak, Cecilia Clementi
    posted to folding md model protein by cactus on 2008-04-18 12:26:33 as ****
  • Geometry-Based Sampling of Conformational Transitions in Proteins
    Structure, Vol. 15, No. 11. (13 November 2007), pp. 1482-1492.
    by Daniel Seeliger, Jurgen Haas, Bert L de Groot
    posted to computation prediction protein structure by cactus on 2008-02-18 07:11:55 as **
  • Between Order and Disorder in Protein Structures: Analysis of "Dual Personality" Fragments in Proteins.
    Structure, Vol. 15, No. 9. (11 September 2007), pp. 1141-1147.
    by Ying Zhang, Boguslaw Stec, Adam Godzik
    posted to analysis intrinsic_disorder protein stability by cactus on 2008-02-18 06:18:52 as ** along with 2 people bicko chad_davis
  • Inferring the palaeoenvironment of ancient bacteria on the basis of resurrected proteins
    Nature, Vol. 425, No. 6955. (2003), pp. 285-288.
    by Eric A Gaucher, Michael J Thomson, Michelle F Burgan, Steven A Benner
    posted to evolution protein stability by cactus on 2008-02-14 06:46:10 as ** along with 1 person gisle
  • The AAA+ superfamily -- a myriad of motions
    Current Opinion in Structural Biology, Vol. 17, No. 6. (December 2007), pp. 641-652.
    by Paul A Tucker, Laszlo Sallai
    posted to aaa clip2 protein review by cactus on 2008-02-12 11:09:24 as ** along with 1 person barry
  • Intrinsic dynamics of enzymes in the unbound state and relation to allosteric regulation
    Current Opinion in Structural Biology, Vol. 17, No. 6. (December 2007), pp. 633-640.
    by Ivet Bahar, Chakra Chennubhotla, Dror Tobi
    posted to allostery protein review by cactus on 2008-02-12 11:05:55 as ** along with 7 people and 3 groups higueruelo LamBras barry aqeel ruvido sobolevnrm jennifermbui structural_bioinformatics Bioinformatics baker-group
  • notes Palaeotemperature trend for Precambrian life inferred from resurrected proteins
    Nature, Vol. 451, No. 7179. (7 February 2008), pp. 704-707.
    by Eric A Gaucher, Sridhar Govindarajan, Omjoy K Ganesh
    posted to evolution protein stability by cactus on 2008-02-12 07:46:45 as ** along with 1 person biomcgary
  • Stability of the proteasome can be regulated allosterically through engagement of its proteolytic active sites
    Nature Structural & Molecular Biology, Vol. 14, No. 12. (18 November 2007), pp. 1180-1188.
    by Maurits F Kleijnen, Jeroen Roelofs, Soyeon Park, Nathaniel A Hathaway, Michael Glickman, Randall W King, Daniel Finley
    posted to allostery clip2 experiment protein by cactus on 2008-01-15 06:19:50 as **
  • Designed Protein-Protein Association
    Science, Vol. 319, No. 5860. (11 January 2008), pp. 206-209.
    by Dirk Grueninger, Nora Treiber, Mathias O Ziegler, Jochen W Koetter, Monika-Sarah Schulze, Georg E Schulz
    posted to clip2 design mutation oligomer protein by cactus on 2008-01-15 06:10:38 as ** along with 5 people and 1 group higueruelo cjeans zwang biomcgary sobolevnrm baker-group
  • Localizing frustration in native proteins and protein assemblies
    Proceedings of the National Academy of Sciences (5 December 2007), 0709915104.
    by Diego U Ferreiro, Joseph A Hegler, Elizabeth A Komives, Peter G Wolynes
    posted to analysis frustration protein structure by cactus on 2008-01-11 10:53:24 as ** along with 2 people and 1 group cjeans sobolevnrm baker-group
  • Structural basis for gate-DNA recognition and bending by type IIA topoisomerases
    Nature, Vol. 450, No. 7173., pp. 1201-1205.
    by Ken C Dong, James M Berger
    posted to clip2 protein xray-crystal-structure by cactus on 2008-01-11 07:38:12 as ** along with 1 person and 1 group sobolevnrm baker-group
  • A hierarchy of timescales in protein dynamics is linked to enzyme catalysis
    Nature (18 November 2007)
    by Katherine A Henzler-Wildman, Ming Lei, Vu Thai, Jordan S Kerns, Martin Karplus, Dorothee Kern
    posted to adk enzyme function protein structural_change by cactus on 2008-01-11 07:11:23 as ** along with 7 people and 1 group tmmurali allmensch sobolevnrm jlh64 RamuAnandakrishnan dmobley chenway baker-group
  • Intrinsic motions along an enzymatic reaction trajectory
    Nature (18 November 2007)
    by Katherine A Henzler-Wildman, Vu Thai, Ming Lei, Maria Ott, Magnus Wolf-Watz, Tim Fenn, Ed Pozharski, Mark A Wilson, Gregory A Petsko, Martin Karplus, Christian G Hübner, Dorothee Kern
    posted to adk enzyme fret function md nmr normal-mode protein structural_change by cactus on 2008-01-11 06:46:50 as ** along with 5 people and 1 group yalexeev ebeutler sobolevnrm paulschlesinger jlh64 baker-group
  • Thermodynamics of Aggregation of Two Proteins
    Journal of the Physical Society of Japan, Vol. 75, No. 6. (June 2006), 064803.
    by Kazuki Nakanishi, Macoto Kikuchi
    posted to dimer entropy mc protein thermodynamics by cactus on 2007-12-20 03:16:42 as **
  • Binding energy, specificity, and enzymic catalysis: the circe effect.
    Adv Enzymol Relat Areas Mol Biol, Vol. 43 (1975), pp. 219-410.
    by WP Jencks
    posted to binding energetics enzyme ligand protein review by cactus on 2007-12-03 11:42:25 as **
  • notes Protein stability imposes limits on organism complexity and speed of molecular evolution
    Proceedings of the National Academy of Sciences, Vol. 104, No. 41. (9 October 2007), pp. 16152-16157.
    by Konstantin B Zeldovich, Peiqiu Chen, Eugene I Shakhnovich
    posted to evolution model population-dynamics protein stability by cactus on 2007-11-20 11:51:41 as ** along with 4 people operon penka cjeans cdeane
  • A functional single-molecule binding assay via force spectroscopy
    Proceedings of the National Academy of Sciences, Vol. 104, No. 40. (2 October 2007), pp. 15677-15681.
    by Yi Cao, MM Balamurali, Deepak Sharma, Hongbin Li
    posted to afm binding clip2 design experiment ligand protein by cactus on 2007-11-20 11:19:21 as **
  • High-resolution structure prediction and the crystallographic phase problem
    Nature (14 October 2007)
    by Bin Qian, Srivatsan Raman, Rhiju Das, Philip Bradley, Airlie J Mccoy, Randy J Read, David Baker
    posted to computation prediction protein structure by cactus on 2007-11-09 10:38:43 as ** along with 15 people and 2 groups ardalby apaydin aheilbut jwm chad_davis eckart_bindewald ffranca dgront massivemayhem cjeans zwang sobolevnrm boris_aguilar Ema chenway OPIG baker-group
  • Open-to-closed transition in apo maltose-binding protein observed by paramagnetic NMR
    Nature, Vol. 449, No. 7165., pp. 1078-1082.
    by Chun Tang, Charles D Schwieters, Marius G Clore
    posted to clip experiment nmr protein structural_change by cactus on 2007-11-09 09:18:21 as ** along with 1 person jlh64
  • Configuration-dependent diffusion can shift the kinetic transition state and barrier height of protein folding
    Proceedings of the National Academy of Sciences (5 September 2007), 0606506104.
    by Jorge Chahine, Ronaldo J Oliveira, Vitor B Leite, Jin Wang
    posted to entropy folding lattice mc protein by cactus on 2007-10-01 10:38:00 as ** along with 1 person lapidus
  • Evolutionary transitions in protein fold space
    Current Opinion in Structural Biology, Vol. 17, No. 3. (June 2007), pp. 354-361.
    by William R Taylor
    posted to evolution protein review structure by cactus on 2007-08-22 08:26:50 as ** along with 3 people cat_worth Jporci cdeane
  • The protein folding problem: when will it be solved?
    Curr Opin Struct Biol (13 June 2007)
    by Ken A A Dill, S Banu B Ozkan, Thomas R R Weikl, John D D Chodera, Vincent A A Voelz
    posted to folding protein review by cactus on 2007-08-22 08:26:01 as ** along with 6 people wouterboomsma cat_worth Jporci cdeane kalicuta sebk
  • Is allostery an intrinsic property of all dynamic proteins?
    Proteins, Vol. 57, No. 3. (15 November 2004), pp. 433-443.
    by K Gunasekaran, B Ma, R Nussinov
    posted to allostery intrinsic_disorder protein review by cactus on 2007-07-05 11:56:38 as ** along with 5 people lna gbart leemary4 choonpeng ruvido
  • Flexible nets. The roles of intrinsic disorder in protein interaction networks.
    FEBS J, Vol. 272, No. 20. (October 2005), pp. 5129-5148.
    by AK Dunker, MS Cortese, P Romero, LM Iakoucheva, VN Uversky
    posted to intrinsic_disorder network protein review by cactus on 2007-07-05 09:49:24 as ** along with 3 people chad_davis niallhaslam Evangelia
  • INTRINSICALLY UNSTRUCTURED PROTEINS AND THEIR FUNCTIONS
    Nat Rev Mol Cell Biol, Vol. 6, No. 3. (March 2005), pp. 197-208.
    by Jane H Dyson, Peter E Wright
    posted to intrinsic_disorder protein review by cactus on 2007-07-05 08:53:50 as ** along with 2 people paulschlesinger Evangelia
  • A simple way to compute protein dynamics without a mechanical model.
    Proteins (13 April 2007)
    by Chien-Hua H Shih, Shao-Wei W Huang, Shih-Chung C Yen, Yan-Long L Lai, Sung-Huan H Yu, Jenn-Kang K Hwang
    posted to dynamics protein by cactus on 2007-05-29 07:51:58 as ** along with 3 people BragilMassoud bicko jlh64
  • Polymerization kinetics of ADP- and ADP-Pi-actin determined by fluorescence microscopy
    PNAS, Vol. 104, No. 21. (22 May 2007), pp. 8827-8832.
    by Ikuko Fujiwara, Dimitrios Vavylonis, Thomas D Pollard
    posted to actin experiment polymerization protein by cactus on 2007-05-24 08:36:34 as **
  • Nonlinear relaxation dynamics in elastic networks and design principles of molecular machines
    PNAS, Vol. 104, No. 21. (22 May 2007), pp. 8697-8702.
    by Yuichi Togashi, Alexander S Mikhailov
    posted to elastic-network protein by cactus on 2007-05-24 08:34:42 as ** along with 2 people joseph_x_zhou aqeel
  • Thorough Validation of Protein Normal Mode Analysis: A Comparative Study with Essential Dynamics
    Structure, Vol. 15, No. 5. (16 May 2007), pp. 565-575.
    by Manuel Rueda, Pablo Chacon, Modesto Orozco
    posted to analysis normal-mode protein by cactus on 2007-05-17 08:40:00 as ** along with 5 people edvin aqeel choonpeng ruvido jlh64
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