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brianb's library [246 articles]

最近录入 brianb's ordered by to_read.
  • Proteomic analysis of active multiple sclerosis lesions reveals therapeutic targets
    Nature (17 February 2008)
    by May H Han, Sun-Il Hwang, Dolly B Roy, Deborah H Lundgren, Jordan V Price, Shalina S Ousman, Guy H Fernald, Bruce Gerlitz, William H Robinson, Sergio E Baranzini, Brian W Grinnell, Cedric S Raine, Raymond A Sobel, David K Han, Lawrence Steinman
    posted to lcm proteomics by brianb on 2008-04-10 19:06:17 as ***** along with 1 person SciNika
  • Interleukin-7 receptor signaling network: an integrated systems perspective.
    Cellular & molecular immunology, Vol. 5, No. 2. (April 2008), pp. 79-89.
    by MJ Palmer, VS Mahajan, LC Trajman, DJ Irvine, DA Lauffenburger, JZ Chen
    posted to mapping network signaling by brianb on 2008-05-02 02:53:36 as ***
  • Protein Quantification by Isotope Dilution Mass Spectrometry of Proteolytic Fragments: Cleavage Rate and Accuracy
    Anal. Chem. (30 April 2008)
    by Cristian G Arsene, Rüdiger Ohlendorf, William Burkitt, Caroline Pritchard, André Henrion, Gavin, David M Bunk, Bernd Güttler
    posted to proteomics quantitation by brianb on 2008-04-30 16:37:51 as ***
  • A Computational Strategy to Analyze Label-Free Temporal Bottom-Up Proteomics Data
    J. Proteome Res. (29 April 2008)
    by Xiuxia Du, Stephen J Callister, Nathan P Manes, Joshua N Adkins, Roxana A Alexandridis, Xiaohua Zeng, Jung H Roh, William E Smith, Timothy J Donohue, Samuel Kaplan, Richard D Smith, Mary S Lipton
    posted to bioinformatics proteomics quantitation by brianb on 2008-04-30 02:03:41 as *** along with 1 person jyuh
  • Dissection of the insulin signaling pathway via quantitative phosphoproteomics
    Proceedings of the National Academy of Sciences, Vol. 105, No. 7. (19 February 2008), pp. 2451-2456.
    by Marcus Kruger, Irina Kratchmarova, Blagoy Blagoev, Yu-Hua Tseng, Ronald C Kahn, Matthias Mann
    posted to no-tag by brianb on 2008-04-28 01:37:12 as *** along with 3 people jyuh renatomilani Evangelia
  • Autophagy fights disease through cellular self-digestion
    Nature, Vol. 451, No. 7182., pp. 1069-1075.
    by Noboru Mizushima, Beth Levine, Ana M Cuervo, Daniel J Klionsky
    posted to autophagy review by brianb on 2008-04-10 19:04:17 as ***
  • Analysis of high molecular mass proteins larger than 150 kDa using cyanogen bromide cleavage and conventional 2-DE
    ELECTROPHORESIS, Vol. 9999, No. 9999. (2008), NA.
    by Aymeric Morla, Florence Poirier, Sylvie Pons, Corinne Beaulieu, Jean-Philippe Charrier, Yasemin Ataman-Önal, Olivier Gléhen, Michel Jolivet, Geneviève Choquet-Kastylevsky
    posted to topdown proteomics electrophoresis by brianb on 2008-10-15 18:18:16 as **
  • Identification of CDK2 substrates in human cell lysates
    Genome Biology, Vol. 9 (13 October 2008), R149.
    by Yong Chi, Markus Welcker, Asli A Hizli, Jeffrey J Posakony, Ruedi Aebersold, Bruce E Clurman
    posted to proteomics phosphorylation by brianb on 2008-10-15 17:10:30 as **
  • Application of a Global Proteomic Approach to Archival Precursor Lesions: Deleted in Malignant Brain Tumors 1 and Tissue Transglutaminase 2 Are Upregulated in Pancreatic Cancer Precursors.
    Pancreatology : official journal of the International Association of Pancreatology (IAP) ... [et al.], Vol. 8, No. 6. (13 October 2008), pp. 608-616.
    by Wang Cheung, Marlene M M Darfler, Hector Alvarez, Brian L L Hood, Thomas P P Conrads, Nils Habbe, David B B Krizman, Jan Mollenhauer, Georg Feldmann, Anirban Maitra
    posted to proteomics lcm formaldehyde cancer by brianb on 2008-10-15 17:07:21 as **
  • Quantitative phosphoproteomics by mass spectrometry: Past, present, and future.
    Proteomics (7 October 2008)
    by Aleksandra Nita-Lazar, Hideshiro Saito-Benz, Forest M M White
    posted to quantitation proteomics phosphorylation by brianb on 2008-10-15 17:05:26 as ** along with 1 person jyuh
  • HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot
    Nucl. Acids Res. (11 October 2008), gkn661.
    by Tania Lima, Andrea H Auchincloss, Elisabeth Coudert, Guillaume Keller, Karine Michoud, Catherine Rivoire, Virginie Bulliard, Edouard de Castro, Corinne Lachaize, Delphine Baratin, Isabelle Phan, Lydie Bougueleret, Amos Bairoch
    posted to proteomics prokaryote by brianb on 2008-10-15 17:04:34 as ** along with 1 person neils
  • Characterization of Strategies for Obtaining Confident Identifications in Bottom-Up Proteomics Measurements Using Hybrid FTMS Instruments
    Anal. Chem. (15 October 2008)
    by Aleksey V Tolmachev, Matthew E Monroe, Samuel O Purvine, Ronald J Moore, Navdeep Jaitly, Joshua N Adkins, Gordon A Anderson, Richard D Smith
    posted to proteomics fragmentation bioinformatics by brianb on 2008-10-15 14:07:08 as ** along with 1 person nedwards
  • Bringing Web 2.0 to bioinformatics.
    Briefings in bioinformatics (8 October 2008)
    by Zhang Zhang, Kei-Hoi H Cheung, Jeffrey P P Townsend
    posted to bioinformatics by brianb on 2008-10-15 14:05:05 as ** along with 5 people jyuh nuin neils fgibson sjcockell
  • Pivotal Evaluation of the Accuracy of a Biomarker Used for Classification or Prediction: Standards for Study Design
    J. Natl. Cancer Inst. (7 October 2008), djn326.
    by Margaret S Pepe, Ziding Feng, Holly Janes, Patrick M Bossuyt, John D Potter
    posted to disease diganostic bias by brianb on 2008-10-09 17:27:33 as ** along with 1 person sg45653
  • Detergent-Based but Gel-Free Method Allows Identification of Several Hundred Membrane Proteins in Single LC-MS Runs
    J. Proteome Res. (8 October 2008)
    by Nagarjuna Nagaraj, Aiping Lu, Matthias Mann, Jacek R Wiśniewski
    posted to proteomics chromatography by brianb on 2008-10-09 03:10:02 as ** along with 1 person jyuh
  • Dependence of Effective Peak Capacity in Comprehensive Two-Dimensional Separations on the Distribution of Peak Capacity between the Two Dimensions
    Anal. Chem. (8 October 2008)
    by Joe M Davis, Dwight R Stoll, Peter W Carr
    posted to proteomics chromatography by brianb on 2008-10-09 01:45:39 as **
  • Versatile Online−Offline Engine for Automated Acquisition of High-Resolution Tandem Mass Spectra
    Anal. Chem. (8 October 2008)
    by Craig D Wenger, Michael T Boyne, Jonathan T Ferguson, Dana E Robinson, Neil L Kelleher
    posted to proteomics chromatography by brianb on 2008-10-09 01:44:12 as **
  • Tissue-Specific Expression and Post-Translational Modification of Histone H3 Variants
    J. Proteome Res., Vol. 7, No. 10. (3 October 2008), pp. 4225-4236.
    by Benjamin A Garcia, Eric C Thomas, Neil L Kelleher, Craig A Mizzen
    posted to tissue ptm proteomics by brianb on 2008-10-08 00:57:46 as ** along with 1 person nedwards
  • Hybridization of Pulsed-Q Dissociation and Collision-Activated Dissociation in Linear Ion Trap Mass Spectrometer for iTRAQ Quantitation
    J. Proteome Res. (7 October 2008)
    by Tiannan Guo, Chee S Gan, Huoming Zhang, Yi Zhu, Oi L Kon, Siu K Sze
    posted to quantitation fragmentation by brianb on 2008-10-08 00:55:23 as **
  • A 200-Antibody Microarray Biochip for Environmental Monitoring: Searching for Universal Microbial Biomarkers through Immunoprofiling
    Anal. Chem. (7 October 2008)
    by Luis A Rivas, Miriam García-Villadangos, Mercedes Moreno-Paz, Patricia Cruz-Gil, Javier Gómez-Elvira, Víctor Parro
    posted to diganostic arrays antibody by brianb on 2008-10-08 00:54:16 as **
  • Top-down versus bottom-up[mdash]rediscovering physiology via systems biology?
    Mol Syst Biol, Vol. 3 (22 May 2007)
    by Ian Wilson
    posted to disease diganostic diabetes by brianb on 2008-10-07 02:58:06 as ** along with 4 people nedwards balicea henning thorak
  • Microbial ecology: Human gut microbes associated with obesity
    Nature, Vol. 444, No. 7122. (21 December 2006), pp. 1022-1023.
    by Ruth E Ley, Peter J Turnbaugh, Samuel Klein, Jeffrey I Gordon
    posted to disease diganostic diabetes by brianb on 2008-10-07 02:55:38 as ** along with 3 people Zephyrus jmeppley GX
  • mzML: A single, unifying data format for mass spectrometer output
    PROTEOMICS, Vol. 8, No. 14. (2008), pp. 2776-2777.
    by Eric Deutsch
    posted to proteomics bioinformatics by brianb on 2008-10-07 01:58:23 as ** along with 2 people jyuh nedwards
  • The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry.
    Nature protocols, Vol. 3, No. 10. (2008), pp. 1630-1638.
    by J Villén, SP Gygi
    posted to proteomics phosphorylation chromatography by brianb on 2008-10-05 20:02:17 as **
  • A Comparative Study of Electrostatic Repulsion-Hydrophilic Interaction Chromatography (ERLIC) versus SCX-IMAC-Based Methods for Phosphopeptide Isolation/Enrichment
    J. Proteome Res. (2 October 2008)
    by Chee S Gan, Tiannan Guo, Huoming Zhang, Sai K Lim, Siu K Sze
    posted to proteomics phosphorylation chromatography by brianb on 2008-10-02 14:19:56 as **
  • Chemical and biological approaches synergize to ameliorate protein-folding diseases.
    Cell, Vol. 134, No. 5. (5 September 2008), pp. 769-781.
    by TW Mu, DS Ong, YJ Wang, WE Balch, JR Yates, L Segatori, JW Kelly
    posted to structure proteomics disease by brianb on 2008-10-01 23:54:43 as **
  • How Much Peptide Sequence Information Is Contained in Ion Trap Tandem Mass Spectra?
    Journal of the American Society for Mass Spectrometry (7 August 2008)
    by Jürgen Cox, Nina C C Hubner, Matthias Mann
    posted to proteomics by brianb on 2008-10-01 23:54:11 as ** along with 2 people jyuh nedwards
  • Combined use of RNAi and quantitative proteomics to study gene function in Drosophila.
    Molecular cell, Vol. 31, No. 5. (5 September 2008), pp. 762-772.
    by T Bonaldi, T Straub, J Cox, C Kumar, PB Becker, M Mann
    posted to rnai quantitation proteomics by brianb on 2008-10-01 23:51:49 as **
  • A high confidence, manually validated human blood plasma protein reference set.
    BMC medical genomics, Vol. 1, No. 1. (15 September 2008)
    by Susann Schenk, Gary J Schoenhals, Gustavo D Souza, Matthias Mann
    posted to proteomics plasma by brianb on 2008-10-01 23:51:26 as ** along with 1 person jyuh
  • Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast
    Nature (28 September 2008)
    by Lyris MF de Godoy, Jesper V Olsen, Jürgen Cox, Michael L Nielsen, Nina C Hubner, Florian Fröhlich, Tobias C Walther, Matthias Mann
    posted to quantitation proteomics by brianb on 2008-10-01 23:51:15 as ** along with 2 people and 1 group dullhunk thomaskelder microbiology_nijmegen
  • Quantitative mass spectrometry as a tool for nutritional proteomics.
    The American journal of clinical nutrition, Vol. 88, No. 3. (September 2008), pp. 597-604.
    by JJ Moresco, MQ Dong, JR Yates
    posted to quantitation proteomics by brianb on 2008-10-01 23:49:06 as **
  • Strategies for shotgun identification of integral membrane proteins by tandem mass spectrometry.
    Proteomics, Vol. 8, No. 19. (5 September 2008), pp. 3947-3955.
    by Bingwen Lu, Daniel B B McClatchy, Jin Young Y Kim, John R R Yates
    posted to proteomics by brianb on 2008-10-01 23:48:44 as **
  • Quantitative Analysis of Brain Nuclear Phosphoproteins Identifies Developmentally Regulated Phosphorylation Events.
    Journal of proteome research (30 September 2008)
    by Lujian Liao, Daniel B McClatchy, Sung K Park, Tao Xu, Bingwen Lu, John R Yates
    posted to quantitation ptm proteomics by brianb on 2008-10-01 23:48:28 as **
  • Inhibition of Bacillus anthracis Spore Outgrowth by Nisin.
    Antimicrobial agents and chemotherapy (22 September 2008)
    by Ian M M Gut, Angela M M Prouty, Jimmy D D Ballard, Wilfred A A van der Donk, Steven R R Blanke
    posted to subtilis by brianb on 2008-10-01 23:47:58 as **
  • Analysis of non-enzymatically glycated peptides: neutral-loss-triggered MS(3) versus multi-stage activation tandem mass spectrometry.
    Rapid communications in mass spectrometry : RCM, Vol. 22, No. 19. (October 2008), pp. 3027-3034.
    by Q Zhang, VA Petyuk, AA Schepmoes, DJ Orton, ME Monroe, F Yang, RD Smith, TO Metz
    posted to ptm proteomics by brianb on 2008-10-01 23:47:29 as **
  • Quantitative Phosphoproteome Analysis of Lysophosphatidic Acid Induced Chemotaxis Applying Dual-Step (18)O Labeling Coupled with Immobilized Metal-Ion Affinity Chromatography.
    Journal of proteome research (12 September 2008)
    by Shi-Jian J Ding, Yingchun Wang, Jon M Jacobs, Wei-Jun J Qian, Feng Yang, Aleksey V Tolmachev, Xiuxia Du, Wei Wang, Ronald J Moore, Matthew E Monroe, Samuel O Purvine, Katrina Waters, Tyler H Heibeck, Joshua N Adkins, David G Camp, Richard L Klemke, Richard D Smith
    posted to quantitation proteomics phosphorylation by brianb on 2008-10-01 23:46:41 as **
  • Multi-spectra peptide sequencing and its applications to multistage mass spectrometry.
    Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008)
    by N Bandeira, JV Olsen, JV Mann, M Mann, PA Pevzner
    posted to proteomics by brianb on 2008-10-01 23:46:20 as ** along with 2 people nuin jyuh
  • Sub-cellular localization of membrane proteins.
    Proteomics, Vol. 8, No. 19. (5 September 2008), pp. 3991-4011.
    by Pawel G G Sadowski, Arnoud J J Groen, Paul Dupree, Kathryn S S Lilley
    posted to proteomics localization by brianb on 2008-10-01 23:46:01 as **
  • Precision proteomics: The case for high resolution and high mass accuracy
    Proceedings of the National Academy of Sciences (2008)
    by Matthias Mann, Neil L Kelleher
    posted to proteomics by brianb on 2008-10-01 23:45:27 as ** along with 2 people and 1 group jyuh nedwards microbiology_nijmegen
  • Current approaches for global post-translational modification discovery and mass spectrometric analysis.
    Analytica chimica acta, Vol. 627, No. 1. (3 October 2008), pp. 50-61.
    by MD Hoffman, MJ Sniatynski, J Kast
    posted to ptm proteomics by brianb on 2008-10-01 23:44:54 as **
  • The niche revealed.
    Cell stem cell, Vol. 3, No. 3. (11 September 2008), pp. 234-236.
    by DS Currle, RJ Gilbertson
    posted to csc by brianb on 2008-10-01 23:44:08 as **
  • MS-BID: a Java package for label-free LC-MS based comparative proteomic analysis.
    Bioinformatics (Oxford, England) (19 September 2008)
    by Daehee Hwang, Ning Zhang, Hookeun Lee, Eugene Yi, Hui Zhang, Inyoul Y Y Lee, Leroy Hood, Ruedi Aebersold
    posted to quantitation proteomics bioinformatics by brianb on 2008-10-01 23:43:24 as ** along with 2 people nuin jyuh
  • Building consensus spectral libraries for peptide identification in proteomics
    Nature Methods, Vol. 5, No. 10. (21 September 2008), pp. 873-875.
    by Henry Lam, Eric W Deutsch, James S Eddes, Jimmy K Eng, Stephen E Stein, Ruedi Aebersold
    posted to proteomics by brianb on 2008-10-01 23:43:00 as ** along with 1 person jyuh
  • A proteome catalog of Drosophila melanogaster: an essential resource for targeted quantitative proteomics.
    Fly, Vol. 1, No. 3. (n 2007), pp. 182-186.
    by CH Ahrens, E Brunner, E Hafen, R Aebersold, K Basler
    posted to quantitation proteomics by brianb on 2008-10-01 23:42:21 as **
  • Modelling and analysis of gene regulatory networks
    Nat Rev Mol Cell Biol, Vol. 9, No. 10. (October 2008), pp. 770-780.
    by Guy Karlebach, Ron Shamir
    posted to network modeling gene by brianb on 2008-09-30 21:06:53 as ** along with 7 people fgibson druvus balicea nedwards dakelley jyuh tmmurali
  • Protein sequence tags: A novel solution for comparative proteomics
    PROTEOMICS, Vol. 5, No. 9. (2005), pp. 2364-2368.
    by Karsten Kuhn, Thorsten Prinz, Jürgen Schäfer, Christian Baumann, Marco Schärfke, Stefan Kienle, Josef Schwarz, Sandra Steiner, Christian Hamon
    posted to proteomics bioinformatics by brianb on 2008-09-23 01:51:37 as ** along with 1 person nedwards
  • High Quality Catalog of Proteotypic Peptides from Human Heart
    J. Proteome Res. (20 September 2008)
    by Kelli G Kline, Barbara Frewen, Michael R Bristow, Michael J Maccoss, Christine C Wu
    posted to proteomics by brianb on 2008-09-22 16:18:48 as **
  • The Impact of Peptide Abundance and Dynamic Range on Stable-Isotope-Based Quantitative Proteomic Analyses
    J. Proteome Res. (18 September 2008)
    by Corey E Bakalarski, Joshua E Elias, Judit Villén, Wilhelm Haas, Scott A Gerber, Patrick A Everley, Steven P Gygi
    posted to silac quantitation proteomics bioinformatics by brianb on 2008-09-18 22:10:59 as **
  • Proteomic strategies in bladder cancer: From tissue to fluid and back
    PROTEOMICS - CLINICAL APPLICATIONS, Vol. 2, No. 7-8. (2008), pp. 974-988.
    by Pavel Gromov, José MA Moreira, Irina Gromova, Julio E Celis
    posted to proteomics histopathology cancer by brianb on 2008-09-17 15:22:41 as **
  • Increasing the Power to Detect Causal Associations by Combining Genotypic and Expression Data in Segregating Populations
    PLoS Computational Biology, Vol. 3, No. 4. (1 April 2007), e69.
    by Jun Zhu, Matthew C Wiener, Chunsheng Zhang, Arthur Fridman, Eric Minch, Pek Y Lum, Jeffrey R Sachs, Eric E Schadt
    posted to genomics expression by brianb on 2008-09-16 21:23:59 as ** along with 6 people jfr hms jo_davies semrich tmmurali beete
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