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brant's library [359 articles]

最近录入 brant's 文献库.
  • Turnover of binding sites for transcription factors involved in early Drosophila development
    Gene, Vol. 310 (22 May 2003), pp. 215-220.
    by Javier Costas, Fernando Casares, Jorge Vieira
    posted to turnover site binding_site binding by brant on 2008-08-04 15:20:55 as **
  • The lepidopteran transposon vector, piggyBac, mediates germ-line transformation in the Mediterranean fruit fly.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 95, No. 13. (23 June 1998), pp. 7520-7525.
    by AM Handler, SD McCombs, MJ Fraser, SH Saul
    posted to transposons tephritid by brant on 2008-06-11 19:47:53 as **
  • Medfly transposable elements: diversity, evolution, genomic impact and possible applications.
    Insect biochemistry and molecular biology, Vol. 34, No. 2. (February 2004), pp. 139-148.
    posted to transposons tephritid by brant on 2008-06-11 19:46:22 as **
  • Inferences on the population structure and colonization process of the invasive oriental fruit fly, Bactrocera dorsalis (Hendel)
    Molecular Ecology, Vol. 16, No. 17. (September 2007), pp. 3522-3532.
    posted to tephritid structure population colonization by brant on 2008-06-11 19:45:43 as **
  • Bactrocera tryoni and closely related pest tephritids--molecular analysis and prospects for transgenic control strategies
    Insect Biochemistry and Molecular Biology, Vol. 34, No. 2. (February 2004), pp. 167-176.
    by Kathryn A Raphael, Steven Whyard, Deborah Shearman, Xin An, Marianne Frommer
    posted to transgenic tephritid review by brant on 2008-06-11 02:31:18 as **
  • Extending Genomics to Natural Communities and Ecosystems
    Science, Vol. 320, No. 5875. (25 April 2008), pp. 492-495.
    by Thomas G Whitham, Stephen P Difazio, Jennifer A Schweitzer, Stephen M Shuster, Gery J Allan, Joseph K Bailey, Scott A Woolbright
  • From Genotype to Phenotype: Systems Biology Meets Natural Variation
    Science, Vol. 320, No. 5875. (25 April 2008), pp. 495-497.
    by Philip N Benfey, Thomas Mitchell-Olds
  • Conserved distances between vertebrate highly conserved elements
    Human Molecular Genetics, Vol. 15, No. 19. (1 October 2006), pp. 2911-2922.
    posted to vertebrate ultraconserved_regions spacing by brant on 2008-05-15 18:46:00 as **
  • Multiple conserved regulatory elements with overlapping functions determine Sox10 expression in mouse embryogenesis.
    Nucleic Acids Res (26 September 2007)
    by Torsten Werner, Alexander Hammer, Mandy Wahlbuhl, Michael R R Bösl, Michael Wegner
  • Purifying Selection Maintains Highly Conserved Noncoding Sequences in Drosophila.
    Mol Biol Evol (23 July 2007)
    by Sònia Casillas, Antonio Barbadilla, Casey M M Bergman
  • Tracing the evolutionary history of Drosophila regulatory regions with models that identify transcription factor binding sites.
    Mol Biol Evol, Vol. 20, No. 5. (May 2003), pp. 703-714.
    by ET Dermitzakis, CM Bergman, AG Clark
  • Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences.
    Genome Res, Vol. 11, No. 8. (August 2001), pp. 1335-1345.
    by CM Bergman, M Kreitman
  • Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome.
    Genome Biol, Vol. 3, No. 12. (2002)
    by CM Bergman, BD Pfeiffer, DE Rincón-Limas, RA Hoskins, A Gnirke, CJ Mungall, AM Wang, B Kronmiller, J Pacleb, S Park, M Stapleton, K Wan, RA George, PJ de Jong, J Botas, GM Rubin, SE Celniker
  • The words of the regulatory code are arranged in a variable manner in highly conserved enhancers.
    Developmental biology (4 April 2008)
    by Sepand Rastegar, Isabell Hess, Thomas Dickmeis, Jean Christophe C Nicod, Raymond Ertzer, Yavor Hadzhiev, Wolf-Gerolf G Thies, Gerd Scherer, Uwe Strähle
  • Global regulatory logic for specification of an embryonic cell lineage
    Proceedings of the National Academy of Sciences (14 April 2008), 0711220105.
    by Paola Oliveri, Qiang Tu, Eric H Davidson
    posted to urchin network development cis-regulation by brant on 2008-05-09 17:50:34 as ** along with 2 people Minty jjray
  • Differences in the selection response of serially repeated color pattern characters: standing variation, development, and evolution
    BMC Evolutionary Biology, Vol. 8 (26 March 2008), 94.
    by Cerisse E Allen, Patricia Beldade, Bas J Zwaan, Paul M Brakefield
    posted to patterning evolution butterfly by brant on 2008-05-09 17:49:58 as **
  • Complex genetic interactions underlying expression differences between Drosophila races: Analysis of chromosome substitutions
    Proceedings of the National Academy of Sciences (22 April 2008), 0711774105.
    by Hurng-Yi Wang, Yonggui Fu, Mary S Mcpeek, Xuemei Lu, Sergey Nuzhdin, Anlong Xu, Jian Lu, Mao-Lien Wu, Chung-I Wu
  • Evidence for stabilizing selection in a eukaryotic enhancer element
    Nature, Vol. 403, No. 6769. (3 February 2000), pp. 564-567.
    by Michael Z Ludwig, Casey Bergman, Nipam H Patel, Martin Kreitman
  • Functional analysis of eve stripe 2 enhancer evolution in Drosophila: rules governing conservation and change.
    Development, Vol. 125, No. 5. (March 1998), pp. 949-958.
    by MZ Ludwig, NH Patel, M Kreitman
  • Functional Evolution of a cis-Regulatory Module
    PLoS Biology, Vol. 3, No. 4. (1 April 2005), e93.
    by Michael Z Ludwig, Arnar Palsson, Elena Alekseeva, Casey M Bergman, Janaki Nathan, Martin Kreitman
  • Genomic sources of regulatory variation in cis and in trans.
    Cell Mol Life Sci, Vol. 62, No. 16. (August 2005), pp. 1779-1783.
    by PJ Wittkopp
  • Modulating Hox gene functions during animal body patterning
    Nature Reviews Genetics, Vol. 6, No. 12. (10 November 2005), pp. 893-904.
    by Joseph C Pearson, Derek Lemons, William Mcginnis
  • A gene-centered C. elegans protein-DNA interaction network.
    Cell, Vol. 125, No. 6. (16 June 2006), pp. 1193-1205.
    posted to worm 1-hybrid by brant on 2008-04-25 08:40:20 as ** along with 2 people tardigrade johncumbers
  • A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system
    Nucl. Acids Res. (10 March 2008), gkn048.
    by Marcus B Noyes, Xiangdong Meng, Atsuya Wakabayashi, Saurabh Sinha, Michael H Brodsky, Scot A Wolfe
    posted to binding_site_model awesome 1-hybrid by brant on 2008-04-25 08:37:32 as **
  • Defining a genomic radius for long-range enhancer action: duplicated conserved non-coding elements hold the key
    Trends in Genetics, Vol. 22, No. 1. (January 2006), pp. 5-10.
    by Tanya Vavouri, Gayle K Mcewen, Adam Woolfe, Walter R Gilks, Greg Elgar
  • Transcriptional regulation of the Drosophila gene zen by competing Smad and Brinker inputs.
    Genes & development, Vol. 15, No. 3. (1 February 2001), pp. 340-351.
    by C Rushlow, PF Colosimo, MC Lin, M Xu, N Kirov
    posted to zen by brant on 2008-04-24 10:24:05 as **
  • Regulation of even-skipped stripe 2 in the Drosophila embryo.
    The EMBO journal, Vol. 11, No. 11. (November 1992), pp. 4047-4057.
    by S Small, A Blair, M Levine
    posted to thesis stripe eve cooperativity by brant on 2008-04-24 10:16:39 as ** along with 1 person emptyhb
  • hairy mediates dominant repression in the Drosophila embryo.
    The EMBO journal, Vol. 16, No. 10. (15 May 1997), pp. 2883-2891.
    by S Barolo, M Levine
    posted to thesis long-range_repressor by brant on 2008-04-24 09:55:11 as **
  • Differential in vivo requirements for oligomerization during Groucho-mediated repression
    EMBO Reports, Vol. aop, No. current. (23 November 2007)
    by Barbara H Jennings, Mark S Wainwright, David Ish-Horowicz
    posted to thesis groucho by brant on 2008-04-24 09:48:50 as **
  • Groucho/TLE family proteins and transcriptional repression.
    Gene, Vol. 249, No. 1-2. (16 May 2000), pp. 1-16.
    by G Chen, AJ Courey
    posted to thesis review long-range_repressor groucho by brant on 2008-04-24 09:41:35 as **
  • A Systems Approach to Measuring the Binding Energy Landscapes of Transcription Factors
    Science, Vol. 315, No. 5809. (12 January 2007), pp. 233-237.
    by Sebastian J Maerkl, Stephen R Quake
  • Sequence Context affects the rate of short insertions and deletions in flies and primates
    Genome Biology, Vol. 9 (21 February 2008), R37.
    by Amos Tanay, Eric D Siggia
  • Ensembl 2005.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
  • How many genes in a genome?
    Genome biology, Vol. 5, No. 1. (2003)
    by B Oliver, B Leblanc
    posted to thesis number_of_genes drosophila by brant on 2008-04-24 05:55:08 as **
  • Specificity, free energy and information content in protein-DNA interactions
    Trends in Biochemical Sciences, Vol. 23, No. 3. (1 March 1998), pp. 109-113.
    by Gary D Stormo, Dana S Fields
    posted to pwm binding_site_model by brant on 2008-04-24 05:21:09 as ** along with 1 person zambujo
  • Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters.
    J Mol Biol, Vol. 193, No. 4. (20 February 1987), pp. 723-750.
    by OG Berg, PH von Hippel
  • Core transcriptional regulatory circuitry in human embryonic stem cells.
    Cell, Vol. 122, No. 6. (23 September 2005), pp. 947-956.
    by LA Boyer, TI Lee, MF Cole, SE Johnstone, SS Levine, JP Zucker, MG Guenther, RM Kumar, HL Murray, RG Jenner, DK Gifford, DA Melton, R Jaenisch, RA Young
  • Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs.
    Cell, Vol. 116, No. 4. (20 February 2004), pp. 499-509.
  • In vivo dissection of the Helicobacter pylori Fur regulatory circuit by genome-wide location analysis.
    Journal of bacteriology, Vol. 188, No. 13. (July 2006), pp. 4654-4662.
    posted to chip-chip bacteria by brant on 2008-04-24 04:52:06 as **
  • Genes directly controlled by CtrA, a master regulator of the Caulobacter cell cycle.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 7. (2 April 2002), pp. 4632-4637.
    by MT Laub, SL Chen, L Shapiro, HH McAdams
    posted to chip-chip bacteria by brant on 2008-04-24 04:48:57 as **
  • Transcriptional regulatory code of a eukaryotic genome
    Nature, Vol. 431, No. 7004. (2004), pp. 99-104.
    by Christopher T Harbison, Benjamin D Gordon, Tong I Lee, Nicola J Rinaldi, Kenzie D Macisaac, Timothy W Danford, Nancy M Hannett, Jean-Bosco Tagne, David B Reynolds, Jane Yoo, Ezra G Jennings, Julia Zeitlinger, Dmitry K Pokholok, Manolis Kellis, Alex P Rolfe, Ken T Takusagawa, Eric S Lander, David K Gifford, Ernest Fraenkel, Richard A Young
  • Transcriptional regulatory networks in Saccharomyces cerevisiae.
    Science, Vol. 298, No. 5594. (25 October 2002), pp. 799-804.
    by TI Lee, NJ Rinaldi, F Robert, DT Odom, Z Bar-Joseph, GK Gerber, NM Hannett, CT Harbison, CM Thompson, I Simon, J Zeitlinger, EG Jennings, HL Murray, DB Gordon, B Ren, JJ Wyrick, JB Tagne, TL Volkert, E Fraenkel, DK Gifford, RA Young
  • Genomic analysis of proteinDNA interactions in bacteria: insights into transcription and chromosome organization
    Molecular Microbiology, Vol. 65, No. 1. (July 2007), pp. 21-26.
    posted to chip-chip bacteria by brant on 2008-04-24 04:42:02 as ** along with 1 person dbikard
  • The Genome Sequence of Drosophila melanogaster
    Science, Vol. 287, No. 5461. (24 March 2000), pp. 2185-2195.
    by Mark D Adams, Susan E Celniker, Robert A Holt, Cheryl A Evans, Jeannine D Gocayne, Peter G Amanatides, Steven E Scherer, Peter W Li, Roger A Hoskins, Richard F Galle, Reed A George, Suzanna E Lewis, Stephen Richards, Michael Ashburner, Scott N Henderson, Granger G Sutton, Jennifer R Wortman, Mark D Yandell, Qing Zhang, Lin X Chen, Rhonda C Brandon, Yu-Hui C Rogers, Robert G Blazej, Mark Champe, Barret D Pfeiffer, Kenneth H Wan, Clare Doyle, Evan G Baxter, Gregg Helt, Catherine R Nelson, GL Gabor, Josep F Abril, Anna Agbayani, Hui-Jin An, Cynthia Andrews-Pfannkoch, Danita Baldwin, Richard M Ballew, Anand Basu, James Baxendale, Leyla Bayraktaroglu, Ellen M Beasley, Karen Y Beeson, P Benos, Benjamin P Berman, Deepali Bhandari, Slava Bolshakov, Dana Borkova, Michael R Botchan, John Bouck, Peter Brokstein, Phillipe Brottier, Kenneth C Burtis, Dana A Busam, Heather Butler, Edouard Cadieu, Angela Center, Ishwar Chandra, Michael M Cherry, Simon Cawley, Carl Dahlke, Lionel B Davenport, Peter Davies, Beatriz d Pablos, Arthur Delcher, Zuoming Deng, Anne D Mays, Ian Dew, Suzanne M Dietz, Kristina Dodson, Lisa E Doup, Michael Downes, Shannon Dugan-Rocha, Boris C Dunkov, Patrick Dunn, Kenneth J Durbin, Carlos C Evangelista, Concepcion Ferraz, Steven Ferriera, Wolfgang Fleischmann, Carl Fosler, Andrei E Gabrielian, Neha S Garg, William M Gelbart, Ken Glasser, Anna Glodek, Fangcheng Gong, Harley H Gorrell, Zhiping Gu, Ping Guan, Michael Harris, Nomi L Harris, Damon Harvey, Thomas J Heiman, Judith R Hernandez, Jarrett Houck, Damon Hostin, Kathryn A Houston, Timothy J Howland, Ming-Hui Wei, Chinyere Ibegwam, Mena Jalali, Francis Kalush, Gary H Karpen, Zhaoxi Ke, James A Kennison, Karen A Ketchum, Bruce E Kimmel, Chinnappa D Kodira, Cheryl Kraft, Saul Kravitz, David Kulp, Zhongwu Lai, Paul Lasko, Yiding Lei, Alexander A Levitsky, Jiayin Li, Zhenya Li, Yong Liang, Xiaoying Lin, Xiangjun Liu, Bettina Mattei, Tina C Mcintosh, Michael P Mcleod, Duncan Mcpherson, Gennady Merkulov, Natalia V Milshina, Clark Mobarry, Joe Morris, Ali Moshrefi, Stephen M Mount, Mee Moy, Brian Murphy, Lee Murphy, Donna M Muzny, David L Nelson, David R Nelson, Keith A Nelson, Katherine Nixon, Deborah R Nusskern, Joanne M Pacleb, Michael Palazzolo, Gjange S Pittman, Sue Pan, John Pollard, Vinita Puri, Martin G Reese, Knut Reinert, Karin Remington, Robert D Saunders, Frederick Scheeler, Hua Shen, Bixiang C Shue, Inga Sidén-Kiamos, Michael Simpson, Marian P Skupski, Tom Smith, Eugene Spier, Allan C Spradling, Mark Stapleton, Renee Strong, Eric Sun, Robert Svirskas, Cyndee Tector, Russell Turner, Eli Venter, Aihui H Wang, Xin Wang, Zhen-Yuan Wang, David A Wassarman, George M Weinstock, Jean Weissenbach, Sherita M Williams, Trevor Woodage, Kim C Worley, David Wu, Song Yang, Alison A Yao, Jane Ye, Ru-Fang Yeh, Jayshree S Zaveri, Ming Zhan, Guangren Zhang, Qi Zhao, Liansheng Zheng, Xiangqun H Zheng, Fei N Zhong, Wenyan Zhong, Xiaojun Zhou, Shiaoping Zhu, Xiaohong Zhu, Hamilton O Smith, Richard A Gibbs, Eugene W Myers, Gerald M Rubin, Craig C Venter
  • The sequence of the human genome.
    Science, Vol. 291, No. 5507. (16 February 2001), pp. 1304-1351.
    by JC Venter, MD Adams, EW Myers, PW Li, RJ Mural, GG Sutton, HO Smith, M Yandell, CA Evans, RA Holt, JD Gocayne, P Amanatides, RM Ballew, DH Huson, JR Wortman, Q Zhang, CD Kodira, XH Zheng, L Chen, M Skupski, G Subramanian, PD Thomas, J Zhang, GL Gabor Miklos, C Nelson, S Broder, AG Clark, J Nadeau, VA McKusick, N Zinder, AJ Levine, RJ Roberts, M Simon, C Slayman, M Hunkapiller, R Bolanos, A Delcher, I Dew, D Fasulo, M Flanigan, L Florea, A Halpern, S Hannenhalli, S Kravitz, S Levy, C Mobarry, K Reinert, K Remington, J Abu-Threideh, E Beasley, K Biddick, V Bonazzi, R Brandon, M Cargill, I Chandramouliswaran, R Charlab, K Chaturvedi, Z Deng, V Di Francesco, P Dunn, K Eilbeck, C Evangelista, AE Gabrielian, W Gan, W Ge, F Gong, Z Gu, P Guan, TJ Heiman, ME Higgins, RR Ji, Z Ke, KA Ketchum, Z Lai, Y Lei, Z Li, J Li, Y Liang, X Lin, F Lu, GV Merkulov, N Milshina, HM Moore, AK Naik, VA Narayan, B Neelam, D Nusskern, DB Rusch, S Salzberg, W Shao, B Shue, J Sun, Z Wang, A Wang, X Wang, J Wang, M Wei, R Wides, C Xiao, C Yan, A Yao, J Ye, M Zhan, W Zhang, H Zhang, Q Zhao, L Zheng, F Zhong, W Zhong, S Zhu, S Zhao, D Gilbert, S Baumhueter, G Spier, C Carter, A Cravchik, T Woodage, F Ali, H An, A Awe, D Baldwin, H Baden, M Barnstead, I Barrow, K Beeson, D Busam, A Carver, A Center, ML Cheng, L Curry, S Danaher, L Davenport, R Desilets, S Dietz, K Dodson, L Doup, S Ferriera, N Garg, A Gluecksmann, B Hart, J Haynes, C Haynes, C Heiner, S Hladun, D Hostin, J Houck, T Howland, C Ibegwam, J Johnson, F Kalush, L Kline, S Koduru, A Love, F Mann, D May, S McCawley, T McIntosh, I McMullen, M Moy, L Moy, B Murphy, K Nelson, C Pfannkoch, E Pratts, V Puri, H Qureshi, M Reardon, R Rodriguez, YH Rogers, D Romblad, B Ruhfel, R Scott, C Sitter, M Smallwood, E Stewart, R Strong, E Suh, R Thomas, NN Tint, S Tse, C Vech, G Wang, J Wetter, S Williams, M Williams, S Windsor, E Winn-Deen, K Wolfe, J Zaveri, K Zaveri, JF Abril, R Guigó, MJ Campbell, KV Sjolander, B Karlak, A Kejariwal, H Mi, B Lazareva, T Hatton, A Narechania, K Diemer, A Muruganujan, N Guo, S Sato, V Bafna, S Istrail, R Lippert, R Schwartz, B Walenz, S Yooseph, D Allen, A Basu, J Baxendale, L Blick, M Caminha, J Carnes-Stine, P Caulk, YH Chiang, M Coyne, C Dahlke, A Mays, M Dombroski, M Donnelly, D Ely, S Esparham, C Fosler, H Gire, S Glanowski, K Glasser, A Glodek, M Gorokhov, K Graham, B Gropman, M Harris, J Heil, S Henderson, J Hoover, D Jennings, C Jordan, J Jordan, J Kasha, L Kagan, C Kraft, A Levitsky, M Lewis, X Liu, J Lopez, D Ma, W Majoros, J McDaniel, S Murphy, M Newman, T Nguyen, N Nguyen, M Nodell, S Pan, J Peck, M Peterson, W Rowe, R Sanders, J Scott, M Simpson, T Smith, A Sprague, T Stockwell, R Turner, E Venter, M Wang, M Wen, D Wu, M Wu, A Xia, A Zandieh, X Zhu