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bioinfo's library [27 articles]

最近录入 bioinfo's 文献库.
  • Clustering exact matches of pairwise sequence alignments by weighted linear regression
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Alvaro Gonzalez, Li Liao
    posted to algorithm alignment assembly contigs genome-assembly sequenceassembly by bioinfo on 2008-02-19 17:26:52 as ***
  • Combining pairwise sequence similarity and support vector machines for remote protein homology detection
    (2002)
    by L Liao, W Noble
    posted to homology pairwise prediction svm by bioinfo on 2005-11-09 11:22:52 as ** along with 1 person scis0000001
  • Statistical mechanics of complex networks
    by R Albert, A Barabási
    posted to graphtheory networks statisticalmechanics by bioinfo on 2005-11-09 11:19:22 as ** along with 3 people kubyaddi mylit dejori
  • Combining phylogenetic and hidden Markov models in biosequence analysis.
    J Comput Biol, Vol. 11, No. 2-3. (2004), pp. 413-428.
    by A Siepel, D Haussler
    posted to hmm markov maximumlikelihood phylogenetic sequences by bioinfo on 2005-11-09 11:18:02 as ** along with 1 person aprasad
  • Order and correlations in genomic DNA sequences. The spectral approach
    Uspekhi Fizicheskikh Nauk (Physics - Uspekhi), Vol. 43, No. 1. (2000), pp. 55-78.
    by Lobzin
    posted to dna spectralentropy by bioinfo on 2005-11-09 11:16:34 as **
  • Transductive Inference for Text Classification using Support Vector Machines
    (1999), pp. 200-209.
    by Thorsten Joachims
    edited by Ivan Bratko, Saso Dzeroski
    posted to svm theory transduction tsvm by bioinfo on 2005-11-09 11:12:25 as ** along with 7 people kozaki mthomure scis0000001 krikamol kaineci ehohman vlachmore
  • Computational identification of plant microRNAs and their targets, including a stress-induced miRNA.
    Mol Cell, Vol. 14, No. 6. (18 June 2004), pp. 787-799.
    by MW Jones-Rhoades, DP Bartel
    posted to mirna plant prediction microrna by bioinfo on 2005-11-09 11:10:43 as ** along with 4 people and 2 groups tardigrade andersbj cdawson natstreet microRNA GIG
  • Filling gaps in a metabolic network using expression information.
    Bioinformatics, Vol. 20 Suppl 1 (4 August 2004)
    by P Kharchenko, D Vitkup, GM Church
    posted to expressiondata metabolicnetwork pathways prediction proteinnetwork by bioinfo on 2005-11-09 11:09:31 as **
  • Learning kernels from biological networks by maximizing entropy.
    Bioinformatics, Vol. 20 Suppl 1 (4 August 2004)
    by K Tsuda, WS Noble
    posted to diffusionkernel interaction maximumentropy protein-protein proteinnetwork by bioinfo on 2005-11-09 11:08:22 as ** along with 4 people and 4 groups carlk jccaicedo jwdietrich girschick MathBio Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study
  • Self-identification of protein-coding regions in microbial genomes.
    Proc Natl Acad Sci U S A, Vol. 95, No. 17. (18 August 1998), pp. 10026-10031.
    by S Audic, JM Claverie
    posted to codingregions markov prediction by bioinfo on 2005-11-09 11:07:13 as ** along with 1 person and 1 group wenhan MBLAB
  • On the convergence of a clustering algorithm for protein-coding regions in microbial genomes.
    Bioinformatics, Vol. 16, No. 4. (April 2000), pp. 367-371.
    by P Baldi
    posted to clustering em theory by bioinfo on 2005-11-09 11:05:47 as ** along with 1 person and 1 group wenhan MBLAB
  • Bayesian gene/species tree reconciliation and orthology analysis using MCMC.
    Bioinformatics, Vol. 19 Suppl 1 (2003)
    by L Arvestad, AC Berglund, J Lagergren, B Sennblad
    posted to bayesian mcmc orthology reconciliation by bioinfo on 2005-11-09 11:04:13 as ** along with 2 people arve ninch
  • The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships.
    Bioinformatics, Vol. 21, No. 17. (1 September 2005), pp. 3482-3489.
    by T Sato, Y Yamanishi, M Kanehisa, H Toh
    posted to coevolution interaction phylogenetic protein-protein by bioinfo on 2005-11-09 11:01:49 as ** along with 2 people bilab cjeans
  • Evolution and assembly of an extremely scrambled gene.
    Proc Natl Acad Sci U S A, Vol. 97, No. 7. (28 March 2000), pp. 3298-3303.
    by LF Landweber, TC Kuo, EA Curtis
    posted to evolution genes by bioinfo on 2005-11-09 11:00:39 as **
  • ProtoNet 4.0: a hierarchical classification of one million protein sequences.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by N Kaplan, O Sasson, U Inbar, M Friedlich, M Fromer, H Fleischer, E Portugaly, N Linial, M Linial
    posted to clustering proteins by bioinfo on 2005-11-09 10:59:07 as **
  • Using information theory to search for co-evolving residues in proteins.
    Bioinformatics, Vol. 21, No. 22. (15 November 2005), pp. 4116-4124.
    by LC Martin, GB Gloor, SD Dunn, LM Wahl
    posted to coevolution informationtheory residues by bioinfo on 2005-11-09 10:57:49 as ** along with 4 people and 1 group caporaso rabio rsantana cjeans biomedical-nlp
  • Identification of functional links between genes using phylogenetic profiles.
    Bioinformatics, Vol. 19, No. 12. (12 August 2003), pp. 1524-1530.
    by J Wu, S Kasif, C DeLisi
    posted to comparitivegenomics sequencecomparison by bioinfo on 2005-11-09 10:55:17 as ** along with 3 people and 2 groups ana winterschlaefer shung structural_bioinformatics Bioinformatics
  • Extraction of correlated gene clusters from multiple genomic data by generalized kernel canonical correlation analysis.
    Bioinformatics, Vol. 19 Suppl 1 (2003)
    by Y Yamanishi, JP Vert, A Nakaya, M Kanehisa
    posted to clustering genes kcca by bioinfo on 2005-11-09 10:53:15 as ** along with 1 person kengg
  • Supervised enzyme network inference from the integration of genomic data and chemical information.
    Bioinformatics, Vol. 21 Suppl 1 (1 June 2005)
    by Y Yamanishi, JP Vert, M Kanehisa
    posted to proteinnetwork supervisedlearning by bioinfo on 2005-11-09 10:51:45 as ** along with 3 people rabbat rcraig iris_2001
  • Fragment assembly with short reads.
    Bioinformatics, Vol. 20, No. 13. (1 September 2004), pp. 2067-2074.
    by M Chaisson, P Pevzner, H Tang
    posted to fragmentassembly sequenceassembly shortreads by bioinfo on 2005-11-09 10:50:59 as ** along with 1 person nedwards
  • Protein network inference from multiple genomic data: a supervised approach.
    Bioinformatics, Vol. 20 Suppl 1 (4 August 2004)
    by Y Yamanishi, JP Vert, M Kanehisa
    posted to proteinnetwork supervisedlearning by bioinfo on 2005-11-09 10:49:42 as ** along with 2 people jfr iris_2001
  • Predicting protein-protein interaction by searching evolutionary tree automorphism space.
    Bioinformatics, Vol. 21 Suppl 1 (1 June 2005)
    by R Jothi, MG Kann, TM Przytycka
    posted to graphtheory interaction phylogenetic protein-protein by bioinfo on 2005-11-09 10:47:43 as **
  • MicroRNA identification based on sequence and structure alignment.
    Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3610-3614.
    by X Wang, J Zhang, F Li, J Gu, T He, X Zhang, Y Li
    posted to microrna mirna by bioinfo on 2005-11-09 10:46:42 as ** along with 2 people and 2 groups marcius eckart_bindewald BioinfoCIPF SGU-CIPF
  • Deriving phylogenetic trees from the similarity analysis of metabolic pathways.
    Bioinformatics, Vol. 19 Suppl 1 (2003)
    by M Heymans, AK Singh
    posted to pathways phylogenetic by bioinfo on 2005-11-09 10:45:32 as **
  • Feature selection and transduction for prediction of molecular bioactivity for drug design.
    Bioinformatics, Vol. 19, No. 6. (12 April 2003), pp. 764-771.
    by J Weston, F Pérez-Cruz, O Bousquet, O Chapelle, A Elisseeff, B Schölkopf
    posted to featureselection transduction by bioinfo on 2005-11-09 10:45:08 as ** along with 1 person kallberg
  • A tree kernel to analyse phylogenetic profiles.
    Bioinformatics, Vol. 18 Suppl 1 (2002)
    by JP Vert
    posted to phylogenetic by bioinfo on 2005-11-09 10:44:32 as ** along with 2 people grahamc girschick
  • The KEGG resource for deciphering the genome.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by M Kanehisa, S Goto, S Kawashima, Y Okuno, M Hattori
    posted to kegg by bioinfo on 2005-11-09 10:43:23 as ** along with 8 people and 1 group irenas BragilMassoud lfriedl nuke2005 alexg wnpx Garamonfok shung kdl
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