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Einat's secondary-structure [28 articles]

当前文献位于 Einat's 文献库 标签分类为 secondary-structure. You can also see everyone's secondary-structure.
  • Occurrence of protein structure elements in conserved sequence regions
    BMC Structural Biology, Vol. 7 (09 January 2007), 3.
    by Einat Sitbon, Shmuel Pietrokovski
    posted to evolution secondary-structure sequence-structure superfunnel by Einat on 2007-09-02 16:06:53 as read along with 1 group structural_bioinformatics
  • notes Fold classification based on secondary structure – how much is gained by including loop topology?
    BMC Structural Biology, Vol. 6 (08 March 2006), 3.
    by Jieun Jeong, Piotr Berman, Teresa Przytycka
    posted to loops secondary-structure structural_alignment by Einat on 2006-11-02 10:02:15 as ** along with 2 people and 2 groups ana martainn structural_bioinformatics Bioinformatics
  • Comparison of super-secondary structures in proteins.
    J Mol Biol, Vol. 76, No. 2. (15 May 1973), pp. 241-256.
    by ST Rao, MG Rossmann
    posted to secondary-structure supersecondary by Einat on 2006-08-13 16:07:34 as ** along with 1 person and 2 groups barry structural_bioinformatics Bioinformatics
  • Protein secondary structure: entropy, correlations and prediction.
    Bioinformatics, Vol. 20, No. 10. (10 July 2004), pp. 1603-1611.
    by GE Crooks, SE Brenner
    posted to entropy local-interactions prediction secondary-structure by Einat on 2006-05-07 08:36:25 as ** along with 2 people and 1 group analogAI leelarcombe structural_bioinformatics
  • Environment-specific amino acid substitution tables: tertiary templates and prediction of protein folds.
    Protein Sci, Vol. 1, No. 2. (February 1992), pp. 216-226.
    by J Overington, D Donnelly, MS Johnson, A Sali, TL Blundell
    posted to folds prediction secondary-structure tertiary-structure by Einat on 2006-05-04 13:53:44 as ** along with 4 people and 1 group vavi bicko massivemayhem medic0747 structural_bioinformatics
  • A physical basis for protein secondary structure
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 96, No. 25. (1999), pp. 14258-14263.
    by R Srinivasan, GD Rose
    posted to protein_structure secondary-structure by Einat on 2006-04-11 10:03:00 as read along with 1 person and 2 groups barry structural_bioinformatics Bioinformatics
  • Is there a unifying mechanism for protein folding?
    Trends Biochem Sci, Vol. 28, No. 1. (January 2003), pp. 18-25.
    by V Daggett, AR Fersht
    posted to folding folding_nucleation review secondary-structure by Einat on 2006-04-04 16:43:26 as ** along with 4 people and 1 group dgront allmensch rabio mirzazadeh structural_bioinformatics
  • Patterns and conformations of commonly occurring supersecondary structures (basic motifs) in protein data bank.
    J Protein Chem, Vol. 15, No. 7. (October 1996), pp. 675-690.
    by Z Sun, B Jiang
    posted to motifs protein_structure secondary-structure by Einat on 2006-03-20 12:48:45 as ** along with 1 group structural_bioinformatics
  • Typical interaction patterns in alphabeta and betaalpha turn motifs.
    Protein Eng, Vol. 11, No. 7. (July 1998), pp. 505-522.
    by R Wintjens, SJ Wodak, M Rooman
    posted to motifs protein_structure secondary-structure by Einat on 2006-03-20 12:31:46 as read along with 1 group structural_bioinformatics
  • Local sequence-structure correlations in proteins.
    Curr Opin Biotechnol, Vol. 7, No. 4. (August 1996), pp. 417-421.
    by C Bystroff, KT Simons, KF Han, D Baker
    posted to conservation secondary-structure sequence-structure by Einat on 2006-02-16 14:53:29 as ** along with 1 person and 1 group dgront structural_bioinformatics
  • Global properties of the mapping between local amino acid sequence and local structure in proteins.
    Proc Natl Acad Sci U S A, Vol. 93, No. 12. (11 June 1996), pp. 5814-5818.
    by KF Han, D Baker
    posted to amino-acid-propensities msa secondary-structure transitions by Einat on 2006-01-02 18:13:07 as **** along with 1 person and 1 group thaliana structural_bioinformatics
  • notes How different amino acid sequences determine similar protein structures: the structure and evolutionary dynamics of the globins.
    J Mol Biol, Vol. 136, No. 3. (25 January 1980), pp. 225-270.
    by AM Lesk, C Chothia
    posted to alpha-helix core evolution globin secondary-structure by Einat on 2005-12-28 10:22:08 as ** along with 1 person and 1 group analogAI structural_bioinformatics
  • Side-chain entropy effects on protein secondary structure formation.
    Proteins, Vol. 62, No. 2. (1 February 2006), pp. 411-420.
    by Brian W W Chellgren, Trevor P P Creamer
    posted to alpha-helix beta-strand entropy flexibility folding secondary-structure by Einat on 2005-12-27 14:04:22 as ***** along with 1 group structural_bioinformatics
  • Analysis of the relation between the sequence and secondary and three-dimensional structures of immunoglobulin molecules.
    Proc Natl Acad Sci U S A, Vol. 92, No. 24. (21 November 1995), pp. 10884-10888.
    by IM Gelfand, AE Kister
    posted to amino-acid-propensities conservation immunoglobulin secondary-structure by Einat on 2005-12-18 09:34:27 as ** along with 1 group structural_bioinformatics
  • Strand-loop-strand motifs: prediction of hairpins and diverging turns in proteins.
    Proteins, Vol. 54, No. 2. (1 February 2004), pp. 282-288.
    by M Kuhn, J Meiler, D Baker
    posted to loop-strand secondary-structure turn by Einat on 2005-12-11 16:35:23 as ** along with 1 person and 1 group Alan structural_bioinformatics
  • Symmetric Connectivity of Secondary Structure Elements Enhances the Diversity of Folding Pathways.
    J Mol Biol (29 September 2005)
    by Dmitri K K Klimov, D Thirumalai
    posted to folding secondary-structure topology by Einat on 2005-10-17 11:43:37 as ***** along with 1 group structural_bioinformatics
  • Computational methods for protein secondary structure prediction using multiple sequence alignments.
    Curr Protein Pept Sci, Vol. 1, No. 3. (November 2000), pp. 273-301.
    by J Heringa
    posted to prediction secondary-structure by Einat on 2005-10-07 10:41:30 as ** along with 1 group structural_bioinformatics
  • Conformation of polypeptides and proteins.
    Adv Protein Chem, Vol. 23 (1968), pp. 283-438.
    by GN Ramachandran, V Sasisekharan
    posted to ramachandran secondary-structure by Einat on 2005-09-29 14:38:36 as ** along with 1 group structural_bioinformatics
  • notes Secondary Structure in Protein Analysis
    (October 2004), pp. 1-6.
    by George D Rose
    edited by William J Lennarz, Daniel M Lane
    posted to alpha-helix beta-strand conformation loops ramachandran secondary-structure turn by Einat on 2005-09-29 10:39:15 as read along with 1 group structural_bioinformatics
  • A thermodynamic scale for the beta-sheet forming tendencies of the amino acids.
    Biochemistry, Vol. 33, No. 18. (10 May 1994), pp. 5510-5517.
    by CK Smith, JM Withka, L Regan
    posted to beta-strand propensities secondary-structure by Einat on 2005-09-29 08:33:51 as ** along with 1 group structural_bioinformatics
  • New efficient statistical sequence-dependent structure prediction of short to medium-sized protein loops based on an exhaustive loop classification.
    J Mol Biol, Vol. 289, No. 5. (25 June 1999), pp. 1469-1490.
    by J Wojcik, JP Mornon, J Chomilier
    posted to conformation loops ramachandran secondary-structure by Einat on 2005-09-28 14:03:50 as *** along with 1 person and 1 group thamelry structural_bioinformatics
  • Local propensities and statistical potentials of backbone dihedral angles in proteins.
    J Mol Biol, Vol. 342, No. 2. (10 September 2004), pp. 635-649.
    by MR Betancourt, J Skolnick
    posted to alpha-helix beta-strand beta_flexibility loops propensities secondary-structure by Einat on 2005-09-27 13:22:08 as ** along with 1 person and 1 group dgront structural_bioinformatics
  • Propensity of amino acids in loop regions connecting beta-strands.
    Protein Pept Lett, Vol. 12, No. 4. (May 2005), pp. 379-382.
    by Z Minuchehr, B Goliaei
    posted to loops secondary-structure by Einat on 2005-09-26 14:45:36 as ** along with 1 group structural_bioinformatics
  • Side-chain entropy opposes alpha-helix formation but rationalizes experimentally determined helix-forming propensities.
    Proc Natl Acad Sci U S A, Vol. 89, No. 13. (1 July 1992), pp. 5937-5941.
    by TP Creamer, GD Rose
    posted to alpha-helix folding secondary-structure by Einat on 2005-09-26 10:27:53 as ** along with 1 group structural_bioinformatics
  • notes Amino acid intrinsic alpha-helical propensities III: positional dependence at several positions of C terminus.
    Protein Sci, Vol. 11, No. 4. (April 2002), pp. 766-777.
    by M Petukhov, K Uegaki, N Yumoto, L Serrano
    posted to alpha-helix amino-acid-propensities secondary-structure by Einat on 2005-09-25 15:40:02 as ** along with 1 group structural_bioinformatics
  • Revisiting the Ramachandran plot: hard-sphere repulsion, electrostatics, and H-bonding in the alpha-helix.
    Protein Sci, Vol. 12, No. 11. (November 2003), pp. 2508-2522.
    by BK Ho, A Thomas, R Brasseur
    posted to alpha-helix secondary-structure by Einat on 2005-09-25 15:31:20 as ** along with 1 group structural_bioinformatics
  • Intrinsic secondary structure propensities of the amino acids, using statistical phi-psi matrices: comparison with experimental scales.
    Proteins, Vol. 20, No. 4. (December 1994), pp. 301-311.
    by V Muñoz, L Serrano
    posted to folding secondary-structure by Einat on 2005-09-25 15:05:42 as ** along with 1 group structural_bioinformatics
  • notes A physical basis for protein secondary structure.
    Proc Natl Acad Sci U S A, Vol. 96, No. 25. (7 December 1999), pp. 14258-14263.
    by R Srinivasan, GD Rose
    posted to secondary-structure by Einat on 2005-09-22 12:41:03 as read along with 1 person and 1 group Diego_Prada structural_bioinformatics
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