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CitoJam's library [64 articles]

最近录入 CitoJam's 文献库.
  • Circumscription---a form of non-monotonic reasoning
    (1987), pp. 145-152.
    by J Mccarthy
    posted to philosophy mccarthy-80 by CitoJam on 2008-05-15 17:58:13 as *
  • notes Building Large Knowledge-Based Systems; Representation and Inference in the Cyc Project
    (1989)
    by Douglas B Lenat, RV Guha
    posted to ontologies lenat-90 by CitoJam on 2008-05-13 19:33:51 as *
  • Incorporating ontology-driven similarity knowledge into functional genomics: an exploratory study
    Bioinformatics and Bioengineering, 2004. BIBE 2004. Proceedings. Fourth IEEE Symposium on (2004), pp. 317-324.
    by F Azuaje, O Bodenreider
    posted to semantic-similarity azuaje-04 by CitoJam on 2008-05-06 22:59:01 as ***
  • Bottom-Up Induction of Feature Terms
    Machine Learning, Vol. 41, No. 3. (1 December 2000), pp. 259-294.
    by Eva Armengol, Enric Plaza
    posted to semantic-similarity armengol-00 by CitoJam on 2008-05-06 22:51:28 as **
  • Contextual correlates of synonymy
    Commun. ACM, Vol. 8, No. 10. (October 1965), pp. 627-633.
    by Herbert Rubenstein, John B Goodenough
    posted to semantic-similarity rubenstein-65 not-printed by CitoJam on 2008-05-06 22:48:19 as *** along with 1 person and 2 groups ejmeij ilps LanguageModeling
  • Contextual correlates of semantic similarity
    Language and Cognitive Processes, Vol. 6, No. 1. (1991), pp. 1-28.
    by George A Miller, Walter G Charles
    posted to semantic-similarity miller-91 by CitoJam on 2008-05-06 22:46:47 as **
  • An information-theoretic definition of similarity
    (1998), pp. 296-304.
    by Dekang Lin
    posted to semantic-similarity lin-98 by CitoJam on 2008-05-06 22:44:59 as *** along with 22 people and 16 groups camster dbk sourada korakot LeightonP frednicolier parmentierf JacquesC mortimer mote lwilliams jelsas jtextori barry ingo gangli garyfeng okarsligil onlyme gaudan macavity1g Tronhus streptomyces NU-PRL Philosophy_of_Information UoY-CS-AIG dbk-lab Blog_and_Wiki_Research structural_bioinformatics tulip ReadingLab ASR ISI NLP SLA Bioinformatics LanguageAndBrain AI
  • Using Information Content to Evaluate Semantic Similarity in a Taxonomy
    (1995), pp. 448-453.
    by Philip Resnik
    posted to semantic-similarity resnik-95 by CitoJam on 2008-05-06 22:42:50 as *** along with 5 people and 7 groups eegilbert mote styliani ejmeij brightbyte ASR ISI NLP SLA LanguageAndBrain ilps LanguageModeling
  • Nouns in WordNet: A Lexical Inheritance System
    Int J Lexicography, Vol. 3, No. 4. (1 January 1990), pp. 245-264.
    by George A Miller
    posted to wordnet semantic-similarity miller-90b by CitoJam on 2008-05-06 22:38:20 as **
  • Word sense disambiguation for free-text indexing using a massive semantic network
    (1993), pp. 67-74.
    by Michael Sussna
    posted to wordnet sussna-93 semantic-similarity by CitoJam on 2008-05-06 22:28:32 as **
  • An Information Model for Genome Map Representation and Assembly
    (1993), pp. 75-84.
    by AJ Lee, EA Rundensteiner, SW Thomas, S Lafortune
    posted to wordnet semantic-similarity lee-93 by CitoJam on 2008-05-06 22:27:11 as **
  • Using WordNet as a Knowledge Base for measuring semantic similarity between words
    No. CA-1294. (1994)
    by Ray Richardson, Alan F Smeaton, J Murphy
    posted to wordnet semantic-similarity richardson-94 by CitoJam on 2008-05-06 22:25:52 as **
  • Development and application of a metric on semantic nets
    Systems, Man and Cybernetics, IEEE Transactions on, Vol. 19, No. 1. (1989), pp. 17-30.
    by R Rada, H Mili, E Bicknell, M Blettner
    posted to wordnet semantic-similarity rada-89b by CitoJam on 2008-05-06 20:11:51 as ** along with 2 people and 2 groups ejmeij Wurlitzer ilps LanguageModeling
  • Ranking documents with a thesaurus.
    Journal of the American Society for Information Science. American Society for Information Science, Vol. 40, No. 5. (September 1989), pp. 304-310.
    by R Rada, E Bicknell
    posted to wordnet semantic-similarity rada-89 by CitoJam on 2008-05-06 20:11:02 as **
  • Introduction to WordNet: An On-line Lexical Database*
    Int J Lexicography, Vol. 3, No. 4. (1 January 1990), pp. 235-244.
    by George A Miller, Richard Beckwith, Christiane Fellbaum, Derek Gross, Katherine J Miller
    posted to wordnet miller-90 by CitoJam on 2008-05-06 19:57:12 as ** along with 3 people briordan jcampos Wurlitzer
  • Similarity
    (1999)
    edited by Robert A Wilson, Frank C Keil
    posted to wordnet goldstone-99 by CitoJam on 2008-05-06 19:55:10 as *
  • WordNet: An Electronic Lexical Database (ISBN: 0-262-06197-X)
    (1998)
    edited by Christian Fellbaum
    posted to wordnet fellbaum-98 by CitoJam on 2008-05-06 19:51:10 as *
  • notes A methodology to migrate the gene ontology to a description logic environment using DAML+OIL.
    Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2003), pp. 624-635.
    by CJ Wroe, R Stevens, CA Goble, M Ashburner
    posted to wroe-03 gene-ontology by CitoJam on 2008-04-26 19:26:05 as **
  • The Ensembl genome database project
    Nucl. Acids Res., Vol. 30, No. 1. (1 January 2002), pp. 38-41.
    by T Hubbard, D Barker, E Birney, G Cameron, Y Chen, L Clark, T Cox, J Cuff, V Curwen, T Down, R Durbin, E Eyras, J Gilbert, M Hammond, L Huminiecki, A Kasprzyk, H Lehvaslaiho, P Lijnzaad, C Melsopp, E Mongin, R Pettett, M Pocock, S Potter, A Rust, E Schmidt, S Searle, G Slater, J Smith, W Spooner, A Stabenau, J Stalker, E Stupka, A Ureta-Vidal, I Vastrik, M Clamp
    posted to hubbard-02 databases by CitoJam on 2008-04-26 19:23:34 as * along with 3 people incovoma kynn raylim
  • Creating the gene ontology resource: design and implementation.
    Genome Res, Vol. 11, No. 8. (August 2001), pp. 1425-1433.
    by
    posted to goc-01 gene-ontology databases by CitoJam on 2008-04-26 19:22:00 as **** along with 5 people and 1 group dgront marck helliontroy sgoetz PunkRock biomedical-nlp
  • The FlyBase database of the Drosophila genome projects and community literature.
    Nucleic Acids Res, Vol. 31, No. 1. (1 January 2003), pp. 172-175.
    by
    posted to fbc-02 databases by CitoJam on 2008-04-26 19:19:07 as * along with 1 person dragonrez
  • The Protein Information Resource (PIR)
    Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 41-44.
    by Winona C Barker, John S Garavelli, Hongzhan Huang, Peter B Mcgarvey, Bruce C Orcutt, Geetha Y Srinivasarao, Chunlin Xiao, Lai-Su L Yeh, Robert S Ledley, Joseph F Janda, Friedhelm Pfeiffer, Hans-Werner Mewes, Akira Tsugita, Cathy Wu
    posted to databases barker-00 by CitoJam on 2008-04-26 13:06:37 as *
  • DNA Data Bank of Japan (DDBJ) in collaboration with mass sequencing teams
    Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 24-26.
    by Yoshio Tateno, Satoru Miyazaki, Motonori Ota, Hideaki Sugawara, Takashi Gojobori
    posted to tateno-00 databases by CitoJam on 2008-04-26 13:05:37 as *
  • The EMBL Nucleotide Sequence Database
    Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 19-23.
    by Wendy Baker, Alexandra van den Broek, Evelyn Camon, Pascal Hingamp, Peter Sterk, Guenter Stoesser, Mary A Tuli
    posted to databases baker-00 by CitoJam on 2008-04-26 13:04:34 as *
  • GenBank.
    Nucleic Acids Res, Vol. 28, No. 1. (1 January 2000), pp. 15-18.
    by DA Benson, I Karsch-Mizrachi, DJ Lipman, J Ostell, BA Rapp, DL Wheeler
    posted to databases benson-00 by CitoJam on 2008-04-26 13:01:12 as * along with 2 people roland gisle
  • The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
    Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 45-48.
    by Amos Bairoch, Rolf Apweiler
    posted to databases barioch-00 by CitoJam on 2008-04-26 12:59:50 as *
  • Yeast: an experimental organism for modern biology
    Science, Vol. 240, No. 4858. (10 June 1988), pp. 1439-1443.
    by D Botstein, GR Fink
    posted to eukaryotes botstein-88 by CitoJam on 2008-04-26 12:57:23 as *
  • Genome cross-referencing and XREFdb: implications for the identification and analysis of genes mutated in human disease.
    Nature genetics, Vol. 15, No. 4. (April 1997), pp. 339-344.
    by DE Bassett, MS Boguski, F Spencer, R Reeves, S Kim, T Weaver, P Hieter
    posted to bassett-97 by CitoJam on 2008-04-26 12:56:18 as *
  • Functional homology of mammalian and yeast RAS genes.
    Cell, Vol. 40, No. 1. (January 1985), pp. 19-26.
    by T Kataoka, S Powers, S Cameron, O Fasano, M Goldfarb, J Broach, M Wigler
    posted to kataoka-85 eukaryotes by CitoJam on 2008-04-26 12:55:54 as *
  • Myb-Related Schizosaccharomyces pombe cdc5p Is Structurally and Functionally Conserved in Eukaryotes
    Mol. Cell. Biol., Vol. 18, No. 7. (1 July 1998), pp. 4097-4108.
    by Ryoma Ohi, Anna Feoktistova, Stacey Mccann, Virginia Valentine, Thomas A Look, Joseph S Lipsick, Kathleen L Gould
    posted to ohi-98 eukaryotes by CitoJam on 2008-04-26 12:54:11 as *
  • Conservation of the Caenorhabditis elegans timing gene clk-1 from yeast to human: a gene required for ubiquinone biosynthesis with potential implications for aging
    Mammalian Genome, Vol. 10, No. 10. (21 October 1999), pp. 1000-1004.
    by Zoltan Vajo, Lynn M King, Tanya Jonassen, Douglas J Wilkin, Nicola Ho, Arnold Munnich, Catherine F Clarke, Clair A Francomano
    posted to vajo-99 eukaryotes by CitoJam on 2008-04-26 12:52:32 as *
  • Biochemical and genetic conservation of fission yeast Dsk1 and human SR protein-specific kinase 1.
    Molecular and cellular biology, Vol. 20, No. 3. (February 2000), pp. 816-824.
    by Z Tang, T Kuo, J Shen, RJ Lin
    posted to tang-00 eukaryotes by CitoJam on 2008-04-26 12:51:04 as *
  • Comparative genomics of the eukaryotes.
    Science, Vol. 287, No. 5461. (24 March 2000), pp. 2204-2215.
    by GM Rubin, MD Yandell, JR Wortman, GL Gabor Miklos, CR Nelson, IK Hariharan, ME Fortini, PW Li, R Apweiler, W Fleischmann, JM Cherry, S Henikoff, MP Skupski, S Misra, M Ashburner, E Birney, MS Boguski, T Brody, P Brokstein, SE Celniker, SA Chervitz, D Coates, A Cravchik, A Gabrielian, RF Galle, WM Gelbart, RA George, LS Goldstein, F Gong, P Guan, NL Harris, BA Hay, RA Hoskins, J Li, Z Li, RO Hynes, SJ Jones, PM Kuehl, B Lemaitre, JT Littleton, DK Morrison, C Mungall, PH O'Farrell, OK Pickeral, C Shue, LB Vosshall, J Zhang, Q Zhao, XH Zheng, S Lewis
    posted to rubin-00 eukaryotes by CitoJam on 2008-04-26 12:49:40 as * along with 6 people renatomilani ujh jwortman rebeccahainess gurkanbebek cmor
  • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.
    Nature, Vol. 408, No. 6814. (14 December 2000), pp. 796-815.
    by
    posted to genome-sequencing agi-00 by CitoJam on 2008-04-26 12:31:52 as * along with 7 people and 1 group sdinka ataheri moborg echinotrix timflutre byy ArtemPankin plant-development
  • Genome sequence of the nematode C. elegans: a platform for investigating biology.
    Science, Vol. 282, No. 5396. (11 December 1998), pp. 2012-2018.
    by
    posted to genome-sequencing celegansconsortium-98 by CitoJam on 2008-04-26 12:28:04 as * along with 7 people sdinka Cortel treangen sujaikumar antonkratz jeanfamily wormbase_ant
  • notes The FlyBase database of the Drosophila Genome Projects and community literature. The FlyBase Consortium.
    Nucleic Acids Res, Vol. 27, No. 1. (1 January 1999), pp. 85-88.
    by Flybase Consortium
    posted to flybase databases by CitoJam on 2008-04-13 23:50:06 as * along with 1 person and 1 group indigoviolet EisenLab
  • notes A short study on the success of the Gene Ontology
    Web Semantics: Science, Services and Agents on the World Wide Web, Vol. 1, No. 2. (February 2004), pp. 235-240.
    by Michael Bada, Robert Stevens, Carole Goble, Yolanda Gil, Michael Ashburner, Judith A Blake, Michael J Cherry, Midori Harris, Suzanna Lewis
    posted to bada-04 gene-ontology by CitoJam on 2008-04-13 23:04:09 as read along with 2 people dullhunk jiangbo
  • notes The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro.
    Genome Res, Vol. 13, No. 4. (April 2003), pp. 662-672.
    by E Camon, M Magrane, D Barrell, D Binns, W Fleischmann, P Kersey, N Mulder, T Oinn, J Maslen, A Cox, R Apweiler
    posted to camon-03 gene-ontology by CitoJam on 2008-04-13 22:50:01 as read along with 2 people alanrw moborg
  • notes Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
    Nat Genet, Vol. 25, No. 1. (May 2000), pp. 25-29.
    by M Ashburner, CA Ball, JA Blake, D Botstein, H Butler, JM Cherry, AP Davis, K Dolinski, SS Dwight, JT Eppig, MA Harris, DP Hill, L Issel-Tarver, A Kasarskis, S Lewis, JC Matese, JE Richardson, M Ringwald, GM Rubin, G Sherlock
    posted to ontologies goc-00 gene-ontology by CitoJam on 2008-04-13 22:44:42 as read along with 31 people and 5 groups dgront marck carlk pablomendes aalibes miguel dragonrez lfriedl chad_davis yas balajis indigoviolet benny dullhunk nirfriedman fisherp caporaso helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele kdl Bioinformatics EisenLab T_lab biomedical-nlp
  • It's all GO for plant scientists.
    Plant physiology, Vol. 138, No. 3. (July 2005), pp. 1268-1279.
    by JI Clark, C Brooksbank, J Lomax
    posted to clark-05 gene-ontology by CitoJam on 2008-04-13 20:32:54 as **
  • An evaluation of GO annotation retrieval for BioCreAtIvE and GOA.
    BMC Bioinformatics, Vol. 6 Suppl 1 (2005)
    by EB Camon, DG Barrell, EC Dimmer, V Lee, M Magrane, J Maslen, D Binns, R Apweiler
    posted to camon-05 gene-ontology by CitoJam on 2008-04-13 20:31:37 as ** along with 4 people and 2 groups yggdrasil yas helliontroy adoms T_lab biomedical-nlp
  • The Universal Protein Resource (UniProt).
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by
    posted to uniprot by CitoJam on 2007-08-19 17:17:57 as ** along with 4 people jyuh dullhunk massivemayhem cjeans
  • Rapid Similarity Searches of Nucleic Acid and Protein Data Banks
    PNAS, Vol. 80, No. 3. (1 February 1983), pp. 726-730.
    by WJ Wilbur, David J Lipman
    posted to fastp wilbur-83 by CitoJam on 2007-08-18 18:40:28 as * along with 1 person creswick
  • Improved tools for biological sequence comparison.
    Proc Natl Acad Sci U S A, Vol. 85, No. 8. (April 1988), pp. 2444-2448.
    by WR Pearson, DJ Lipman
    posted to fastp pearson-88 by CitoJam on 2007-08-18 17:16:05 as * along with 8 people and 2 groups Ema arcticrasta ffranca gurkanbebek bsmagic lusk cjeans sujaikumar Bioinformatics bioinplant
  • Rapid and sensitive protein similarity searches.
    Science, Vol. 227, No. 4693. (22 March 1985), pp. 1435-1441.
    by DJ Lipman, WR Pearson
    posted to fastp lipman-85 by CitoJam on 2007-08-18 17:10:28 as * along with 2 people dgront lusk
  • BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences.
    FEMS Microbiol Lett, Vol. 174, No. 2. (15 May 1999), pp. 247-250.
    by TA Tatusova, TL Madden
    posted to blast tatusova-99 by CitoJam on 2007-08-17 16:59:09 as *
  • notes A new measure for functional similarity of gene products based on Gene Ontology
    BMC Bioinformatics, Vol. 7 (15 June 2006), 302.
    by Andreas Schlicker, Francisco S Domingues, Jorg Rahnenfuhrer, Thomas Lengauer
    posted to schlicker-06 by CitoJam on 2007-01-31 17:32:58 as *** along with 5 people and 1 group bsamal yas gaudan iris_2001 macavity1g T_lab
  • notes Gene expression correlation and gene ontology-based similarity: an assessment of quantitative relationships
    Computational Intelligence in Bioinformatics and Computational Biology, 2004. CIBCB '04. Proceedings of the 2004 IEEE Symposium on (2004), pp. 25-31.
    by H Wang, F Azuaje, O Bodenreider, J Dopazo
    posted to wang-04 semantic-similarity gene-ontology gene-expression-correlation by CitoJam on 2006-12-15 15:25:59 as ***
  • notes GARBAN: genomic analysis and rapid biological annotation of cDNA microarray and proteomic data
    Bioinformatics, Vol. 19, No. 16. (1 November 2003), pp. 2158-2160.
    by Luis A Martinez-Cruz, Angel Rubio, Maria L Martinez-Chantar, Alberto Labarga, Isabel Barrio, Adam Podhorski, Victor Segura, Sevilla, Matias A Avila, Jose M Mato
    posted to gene-ontology martinez-cruz-03 by CitoJam on 2006-11-08 11:09:59 as read along with 1 person macavity1g
  • Semantic Similarity Based on Corpus Statistics and Lexical Taxonomy
    (September 1997), 9008.
    by JJ Jiang, DW Conrath
    posted to jiang-97 semantic-similarity by CitoJam on 2006-11-07 14:55:17 as ** along with 3 people and 2 groups ejmeij iris_2001 Wurlitzer ilps LanguageModeling
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