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所有的文献@标签 systems_biology [392 articles]

当前文献的标签分类为: systems_biology.
  • Pathway information for systems biology.
    FEBS Lett, Vol. 579, No. 8. (21 March 2005), pp. 1815-1820.
    by MP Cary, GD Bader, C Sander
  • Network biology: understanding the cell's functional organization.
    Nat Rev Genet, Vol. 5, No. 2. (February 2004), pp. 101-113.
    by AL Barabási, ZN Oltvai
  • Grouping Gene Ontology terms to improve the assessment of gene set enrichment in microarray data
    BMC Bioinformatics, Vol. 7 (03 October 2006), 426.
    by Alex Lewin, Ian C Grieve
  • Reconstruction of genetic circuits
    Nature, Vol. 438, No. 7067., pp. 443-448.
    by David Sprinzak, Michael B Elowitz
  • Molecular systems biology at the crossroads: to know less about more, or to know more about less?
    Proteome Sci, Vol. 3 (28 October 2005)
  • Executable cell biology
    Nat Biotech, Vol. 25, No. 11. (November 2007), pp. 1239-1249.
    by Jasmin Fisher, Thomas A Henzinger
  • A Systems Model of Signaling Identifies a Molecular Basis Set for Cytokine-Induced Apoptosis
    Science, Vol. 310, No. 5754. (9 December 2005), pp. 1646-1653.
    by Kevin A Janes, John G Albeck, Suzanne Gaudet, Peter K Sorger, Douglas A Lauffenburger, Michael B Yaffe
  • Optimization in computational systems biology
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Julio Banga
  • Self-organization in cell biology: a brief history
    Nat Rev Mol Cell Biol, Vol. 9, No. 3. (March 2008), pp. 255-262.
    by Eric Karsenti
    posted to systems_biology by tmmurali on 2008-02-22 17:56:03 as ** along with 1 person jyuh
  • Systems biology: a brief overview.
    Science, Vol. 295, No. 5560. (1 March 2002), pp. 1662-1664.
    by H Kitano
  • Getting Started in Probabilistic Graphical Models
    PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e252.
    by Edoardo M Airoldi
  • Algorithms and Software for Stochastic Simulation of Biochemical Reacting Systems
    Biotechnol. Prog. (26 September 2007)
    by H Li, Y Cao, LR Petzold, DT Gillespie
  • Towards a theory of biological robustness
    Mol Syst Biol, Vol. 3 (2007)
    by Hiroaki Kitano
  • Variable-free exploration of stochastic models: a gene regulatory network example
    (6 Nov 2006)
    by Radek Erban, Thomas A Frewen, Xiao Wang, Timothy C Elston, Ronald Coifman, Boaz Nadler, Ioannis G Kevrekidis
  • Controlling the rates of biochemical reactions and signaling networks by shape and volume changes
    Proceedings of the National Academy of Sciences, Vol. 105, No. 11. (18 March 2008), pp. 4099-4104.
    by L Lizana, B Bauer, O Orwar
  • Robustness and modular design of the Drosophila segment polarity network
    Mol Syst Biol, Vol. 2 (12 December 2006)
    by Wenzhe Ma, Luhua Lai, Qi Ouyang, Chao Tang
  • From Pathways Databases to Network Models of Switching Behavior
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e152.
    by Baltazar D Aguda, Andrew B Goryachev
  • The principle of flux minimization and its application to estimate stationary fluxes in metabolic networks.
    Eur J Biochem, Vol. 271, No. 14. (July 2004), pp. 2905-2922.
  • Computational Insights on the Competing Effects of Nitric Oxide in Regulating Apoptosis
    PLoS ONE, Vol. 3, No. 5. (28 May 2008), e2249.
    by Elife Z Bagci, Yoram Vodovotz, Timothy R Billiar, Bard Ermentrout, Ivet Bahar
    posted to nitric_oxide systems_biology by sobolevnrm on 2008-07-23 12:11:10 as read along with 1 group baker-group
  • Universally Sloppy Parameter Sensitivities in Systems Biology Models
    PLoS Computational Biology, Vol. 3, No. 10. (1 October 2007), e189.
    by Ryan N Gutenkunst, Joshua J Waterfall, Fergal P Casey, Kevin S Brown, Christopher R Myers, James P Sethna
  • A mathematical tool for exploring the dynamics of biological networks
    Proceedings of the National Academy of Sciences (21 November 2007), 0709955104.
    by Paolo E Barbano, Marina Spivak, Marc Flajolet, Angus C Nairn, Paul Greengard, Leslie Greengard
  • Bayesian Ranking of Biochemical System Models.
    Bioinformatics (5 December 2007)
    by Vladislav Vyshemirsky, Mark A A Girolami
  • Modularization of biochemical networks based on classification of Petri net t-invariants
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Eva G Belau, Falk Schreiber, Monika Heiner, Andrea Sackmann, Bjorn Junker, Stefanie Grunwald, Astrid Speer, Katja Winder, Ina Koch
  • Computer Modeling of Mitochondrial Tricarboxylic Acid Cycle, Oxidative Phosphorylation, Metabolite Transport, and Electrophysiology
    J. Biol. Chem., Vol. 282, No. 34. (24 August 2007), pp. 24525-24537.
    by Fan Wu, Feng Yang, Kalyan C Vinnakota, Daniel A Beard
  • On anti-portfolio effects in science and technology with application to reaction kinetics, chemical synthesis, and molecular biology
    Proceedings of the National Academy of Sciences, Vol. 104, No. 47. (20 November 2007), pp. 18398-18403.
    by Marcel O Vlad, Alexandru D Corlan, Vlad T Popa, John Ross
  • Toward realistic modeling of dynamic processes in cell signaling: Quantification of macromolecular crowding effects
    The Journal of Chemical Physics, Vol. 127, No. 15. (2007)
    by Jian Sun, Harel Weinstein
  • Roles of Hemoglobin Allostery in Hypoxia-induced Metabolic Alterations in Erythrocytes: SIMULATION AND ITS VERIFICATION BY METABOLOME ANALYSIS
    J. Biol. Chem., Vol. 282, No. 14. (6 April 2007), pp. 10731-10741.
    by Ayako Kinoshita, Kosuke Tsukada, Tomoyoshi Soga, Takako Hishiki, Yuki Ueno, Yoichi Nakayama, Masaru Tomita, Makoto Suematsu
    posted to nitric_oxide systems_biology by sobolevnrm on 2007-09-18 14:18:57 as read along with 1 group baker-group
  • The properties of high-dimensional data spaces: implications for exploring gene and protein expression data
    Nat Rev Cancer, Vol. 8, No. 1. (January 2008), pp. 37-49.
    by Robert Clarke, Habtom W Ressom, Antai Wang, Jianhua Xuan, Minetta C Liu, Edmund A Gehan, Yue Wang
  • Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae
    Journal of Biology, Vol. 5, No. 4. (08 June 2006), 11.
    by Teresa Reguly, Ashton Breitkreutz, Lorrie Boucher, Bobby-Joe Breitkreutz, Gary C Hon, Chad L Myers, Ainslie Parsons, Helena Friesen, Rose Oughtred, Amy Tong, Chris Stark, Yuen Ho, David Botstein, Brenda Andrews, Charles Boone, Olga G Troyanskya, Trey Ideker, Kara Dolinski, Nizar N Batada, Mike Tyers
  • A novel method for generation of signature networks as biomarkers from complex high throughput data.
    Toxicol Lett, Vol. 158, No. 1. (28 July 2005), pp. 20-29.
    posted to genego systems_biology by shikin on 2008-02-18 14:46:29 as **
  • A novel method for visualizing nuclear hormone receptor networks relevant to drug metabolism.
    Drug metabolism and disposition: the biological fate of chemicals, Vol. 33, No. 3. (March 2005), pp. 474-481.
    posted to genego network systems_biology toxicology by shikin on 2008-05-04 13:19:07 as ** along with 1 group GeneGo
  • Computational systems biology.
    Nature, Vol. 420, No. 6912. (14 November 2002), pp. 206-210.
    by H Kitano
  • Gene Expression Profiling in Lung Tissues from Mice Exposed to Cigarette Smoke, Lipopolysaccharide, or Smoke Plus Lipopolysaccharide by Inhalation
    Inhalation Toxicology, Vol. 18, No. 8. (July 2006), pp. 555-568.
    by Meng, , Gideon, , Harbo, , Renne, , Lee, , Brys, , Jones,
    posted to genego systems_biology by shikin on 2008-02-18 15:00:48 as **
  • Functional network analysis of the transcriptomes of mesenchymal stem cells derived from amniotic fluid, amniotic membrane, cord blood, and bone marrow.
    Stem Cells, Vol. 25, No. 10. (October 2007), pp. 2511-2523.
    by MS Tsai, SM Hwang, KD Chen, YS Lee, LW Hsu, YJ Chang, CN Wang, HH Peng, YL Chang, AS Chao, SD Chang, KD Lee, TH Wang, HS Wang, YK Soong
    posted to functional_analysis genomics pathway-analysis systems_biology by shikin on 2008-01-09 17:43:16 as read
  • Predicting synthetic rescues in metabolic networks
    Mol Syst Biol, Vol. 4 (12 February 2008)
    by Adilson E Motter, Natali Gulbahce, Eivind Almaas, Albert-Laszlo Barabasi
  • The Genomic Landscapes of Human Breast and Colorectal Cancers.
    Science (11 October 2007)
    by Laura D D Wood, D Williams W Parsons, Siân Jones, Jimmy Lin, Tobias Sjöblom, Rebecca J J Leary, Dong Shen, Simina M M Boca, Thomas Barber, Janine Ptak, Natalie Silliman, Steve Szabo, Zoltan Dezso, Vadim Ustyanksky, Tatiana Nikolskaya, Yuri Nikolsky, Rachel Karchin, Paul A A Wilson, Joshua S S Kaminker, Zemin Zhang, Randal Croshaw, Joseph Willis, Dawn Dawson, Michail Shipitsin, James K V K Willson, Saraswati Sukumar, Kornelia Polyak, Ben Ho H Park, Charit L L Pethiyagoda, P V Krishna V Pant, Dennis G G Ballinger, Andrew B B Sparks, James Hartigan, Douglas R R Smith, Erick Suh, Nickolas Papadopoulos, Phillip Buckhaults, Sanford D D Markowitz, Giovanni Parmigiani, Kenneth W W Kinzler, Victor E E Velculescu, Bert Vogelstein
  • Molecular definition of breast tumor heterogeneity.
    Cancer Cell, Vol. 11, No. 3. (March 2007), pp. 259-273.
    posted to cancer genego systems_biology by shikin on 2008-02-18 14:20:35 as ** along with 2 people jyuh jfr
  • notes Genes2Networks: connecting lists of gene symbols using mammalian protein interactions databases
    BMC Bioinformatics, Vol. 8 (04 October 2007), 372.
    by Seth I Berger, Jeremy M Posner, Avi Ma'ayan
  • notes The large-scale organization of metabolic networks.
    Nature, Vol. 407, No. 6804. (5 October 2000), pp. 651-654.
    by H Jeong, B Tombor, R Albert, ZN Oltvai, AL Barabási
  • Understanding biological functions through molecular networks
    Cell Res, Vol. 18, No. 2. (0000), pp. 224-237.
    by Jing-Dong J Han
  • Transcriptional networks in plasmacytoid dendritic cells stimulated with synthetic TLR 7 agonists
    BMC Immunology, Vol. 8 (12 October 2007), 26.
    by Woubalem Birmachu, Raymond M Gleason, Barbara J Bulbulian, Christie L Riter, John P Vasilakos, Kenneth E Lipson, Yuri Nikolsky
    posted to genego systems_biology by shikin on 2008-02-18 14:42:56 as **
  • Integrating physical and genetic maps: from genomes to interaction networks
    Nature Reviews Genetics, Vol. 8, No. 9., pp. 699-710.
    by Andreas Beyer, Sourav Bandyopadhyay, Trey Ideker
  • Core Signaling Pathways in Human Pancreatic Cancers Revealed by Global Genomic Analyses
    Science (4 September 2008), 1164368.
    by Sian Jones, Xiaosong Zhang, Williams D Parsons, Jimmy C Lin, Rebecca J Leary, Philipp Angenendt, Parminder Mankoo, Hannah Carter, Hirohiko Kamiyama, Antonio Jimeno, Seung-Mo Hong, Baojin Fu, Ming-Tseh Lin, Eric S Calhoun, Mihoko Kamiyama, Kimberly Walter, Tatiana Nikolskaya, Yuri Nikolsky, James Hartigan, Douglas R Smith, Manuel Hidalgo, Steven D Leach, Alison P Klein, Elizabeth M Jaffee, Michael Goggins, Anirban Maitra, Christine Iacobuzio-Donahue, James R Eshleman, Scott E Kern, Ralph H Hruban, Rachel Karchin, Nickolas Papadopoulos, Giovanni Parmigiani, Bert Vogelstein, Victor E Velculescu, Kenneth W Kinzler
  • notes A systems biology approach for pathway level analysis
    Genome Res. (4 September 2007), gr.6202607.
    by Sorin Draghici, Purvesh Khatri, Adi L Tarca, Kashyap Amin, Arina Done, Calin Voichita, Constantin Georgescu, Roberto Romero
  • From signatures to models: understanding cancer using microarrays.
    Nat Genet, Vol. 37 Suppl (June 2005)
  • Application of transcriptional and biological network analyses in mouse germ-cell transcriptomes.
    Genomics, Vol. 88, No. 1. (July 2006), pp. 18-33.
    by TL Lee, D Alba, V Baxendale, OM Rennert, WY Chan
    posted to genego systems_biology by shikin on 2008-02-18 14:38:28 as **
  • Early prediction of drug metabolism and toxicity: systems biology approach and modeling.
    Drug Discov Today, Vol. 9, No. 3. (1 February 2004), pp. 127-135.
    posted to genego systems_biology toxicology by shikin on 2008-02-18 15:30:46 as ** along with 1 person kuhn
  • Identification of the Proliferation/Differentiation Switch in the Cellular Network of Multicellular Organisms
    PLoS Computational Biology, Vol. 2, No. 11. (1 November 2006), e145.
    by Kai Xia, Huiling Xue, Dong Dong, Shanshan Zhu, Jiamu Wang, Qingpeng Zhang, Lei Hou, Hua Chen, Ran Tao, Zheng Huang, Zheng Fu, Ye-Guang Chen, Jing-Dong J Han
  • Overlapping gene expression profiles of model compounds provide opportunities for immunotoxicity screening.
    Toxicol Appl Pharmacol, Vol. 226, No. 1. (1 January 2008), pp. 46-59.
    posted to genego systems_biology toxicology by shikin on 2008-02-18 15:25:59 as **
  • The Molecular Biology Database Collection: 2007 update.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by MY Galperin
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