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所有的文献@标签 protein-protein-interactions [44 articles]

当前文献的标签分类为: protein-protein-interactions.
  • The Biomolecular Interaction Network Database and related tools 2005 update.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by C Alfarano, CE Andrade, K Anthony, N Bahroos, M Bajec, K Bantoft, D Betel, B Bobechko, K Boutilier, E Burgess, K Buzadzija, R Cavero, C D'Abreo, I Donaldson, D Dorairajoo, MJ Dumontier, MR Dumontier, V Earles, R Farrall, H Feldman, E Garderman, Y Gong, R Gonzaga, V Grytsan, E Gryz, V Gu, E Haldorsen, A Halupa, R Haw, A Hrvojic, L Hurrell, R Isserlin, F Jack, F Juma, A Khan, T Kon, S Konopinsky, V Le, E Lee, S Ling, M Magidin, J Moniakis, J Montojo, S Moore, B Muskat, I Ng, JP Paraiso, B Parker, G Pintilie, R Pirone, JJ Salama, S Sgro, T Shan, Y Shu, J Siew, D Skinner, K Snyder, R Stasiuk, D Strumpf, B Tuekam, S Tao, Z Wang, M White, R Willis, C Wolting, S Wong, A Wrong, C Xin, R Yao, B Yates, S Zhang, K Zheng, T Pawson, BF Ouellette, CW Hogue
    posted to database protein-protein-interactions by yas on 2007-04-20 09:20:56 as ** along with 4 people and 3 groups balajis zlu frohike dagmar T_lab dIEMoSIRIS compneur
  • BIND--a data specification for storing and describing biomolecular interactions, molecular complexes and pathways.
    Bioinformatics, Vol. 16, No. 5. (May 2000), pp. 465-477.
    by GD Bader, CW Hogue
    posted to database protein-protein-interactions by yas on 2007-04-20 09:16:38 as ** along with 3 people and 1 group blackbart Evangelia acarbo T_lab
  • A text-mining analysis of the human phenome
    European Journal of Human Genetics, Vol. aop, No. current.
    by Marc A van Driel, Jorn Bruggeman, Gert Vriend, Han G Brunner, Jack AM Leunissen,
    posted to protein-protein-interactions text-mining by yas on 2007-04-30 09:42:25 as ** along with 2 people and 3 groups jyuh dejori T_lab ic4 generif_paper
  • Discovering patterns to extract protein-protein interactions from full texts.
    Bioinformatics, Vol. 20, No. 18. (12 December 2004), pp. 3604-3612.
    by M Huang, X Zhu, Y Hao, DG Payan, K Qu, M Li
    posted to information-extraction protein-protein-interactions by yas on 2005-09-29 13:52:03 as read along with 3 people and 2 groups irenas davidandrzej natsu dbk-lab T_lab
  • A domain-based approach to predict protein-protein interactions
    BMC Bioinformatics, Vol. 8 (13 June 2007), 199.
    by Mudita Singhal, Haluk Resat
    posted to protein-protein-interactions by yas on 2007-07-29 08:49:38 as ** along with 3 people and 2 groups carlk grahamc phoenixzxl T_lab ParkinsonLab_at_MaRS
  • Modeling cellular machinery through biological network comparison
    Nature Biotechnology, Vol. 24, No. 4. (06 April 2006), pp. 427-433.
    by Roded Sharan, Trey Ideker
    posted to network-analysis protein-function-prediction protein-protein-interactions by yas on 2007-05-22 06:30:37 as ** along with 16 people and 2 groups carlk cdeane tmmurali kuhn tuck balajis wnpx ma_ko gurkanbebek koller gcalda grahamc massivemayhem karfunkel mingzhi vietanh0 T_lab ParkinsonLab_at_MaRS
  • Towards zoomable multidimensional maps of the cell
    Nature Biotechnology, Vol. 25, No. 5. (04 May 2007), pp. 547-554.
    by Zhenjun Hu, Joe Mellor, Jie Wu, Minoru Kanehisa, Joshua M Stuart, Charles Delisi
    posted to protein-protein-interactions systems-biology visualization by yas on 2007-11-02 03:14:40 as ** along with 8 people jyuh thomaskelder AlexanderPico tmmurali kuhn cmmorel balajis dullhunk
  • Functional genome annotation through phylogenomic mapping
    Nature Biotechnology, Vol. 23, No. 6. (06 June 2005), pp. 691-698.
    by Balaji S Srinivasan, Nora B Caberoy, Garret Suen, Rion G Taylor, Radhika Shah, Farah Tengra, Barry S Goldman, Anthony G Garza, Roy D Welch
    posted to protein-protein-interactions systems-biology by nedwards on 2008-04-16 13:48:22 as ** along with 11 people and 1 group shoshin operon setar tmmurali pggm aprasad balajis nuke2005 lyongu blobbybirdman kroos Myxo group
  • IntNetDB v1.0: An integrated protein-protein interaction network database generated by a probabilistic model
    BMC Bioinformatics, Vol. 7 (18 November 2006), 508.
    by Kai Xia, Dong Dong, Jing-Dong J Han
    posted to heterogeneous-data-sources protein-protein-interactions systems-biology by nedwards on 2008-04-16 13:43:44 as ** along with 3 people wnpx cdallett maralena
  • Predicting co-complexed protein pairs using genomic and proteomic data integration.
    BMC Bioinformatics, Vol. 5 (16 April 2004)
    by LV Zhang, SL Wong, OD King, FP Roth
    posted to heterogeneous-data-sources protein-protein-interactions systems-biology by nedwards on 2008-04-16 13:41:55 as ** along with 3 people and 1 group carlk lfriedl reidy kdl
  • Protein networks in disease
    Genome Res., Vol. 18, No. 4. (1 April 2008), pp. 644-652.
    by Trey Ideker, Roded Sharan
    posted to heterogeneous-data-sources protein-protein-interactions systems-biology by nedwards on 2008-04-16 19:18:04 as ** along with 19 people zwang balicea raiyar ptrobajo jfr brianb paolomarcatili thomaskelder gracio schuylrp jyuh tmmurali Borelli jwdietrich frohike bootsy roys mclarenv phoenixzxl
  • Assessing the limits of genomic data integration for predicting protein networks.
    Genome Res, Vol. 15, No. 7. (July 2005), pp. 945-953.
    by LJ Lu, Y Xia, A Paccanaro, H Yu, M Gerstein
    posted to heterogeneous-data-sources protein-protein-interactions systems-biology by nedwards on 2008-04-16 13:39:56 as ** along with 13 people and 2 groups phoenixzxl carlk brianb iris_2001 okarsligil lfriedl balajis maryee opheliav wnpx mbeautru eukfn grahamc kdl Bioinformatics
  • A Bayesian networks approach for predicting protein-protein interactions from genomic data.
    Science, Vol. 302, No. 5644. (17 October 2003), pp. 449-453.
    by R Jansen, H Yu, D Greenbaum, Y Kluger, NJ Krogan, S Chung, A Emili, M Snyder, JF Greenblatt, M Gerstein
    posted to heterogeneous-data-sources protein-protein-interactions systems-biology by nedwards on 2008-04-16 13:54:41 as ** along with 18 people and 2 groups frohike carlk lfriedl balajis opheliav yuval wnpx nickluscombe ruvido raiyar massivemayhem kdang dbgrant karfunkel Evangelia shung phoenixzxl penpen926 kdl EBI-regulation
  • Hierarchical structure and the prediction of missing links in networks
    Nature, Vol. 453, No. 7191., pp. 98-101.
    by Aaron Clauset, Cristopher Moore, MEJ Newman
    posted to systems-biology protein-protein-interactions by nedwards on 2008-05-09 16:38:15 as ** along with 35 people sen_cheng jjray rds Borelli ptrobajo apwesolowski dpf cmmorel fbaroni balicea cmor kengg pbull jago Ema gtgt15 hryk i-stevenson pinney elsantosneto markusd eyliu craigwilson06 jyuh margaritis gagliol bryanhughes akshat tmmurali cactus AbnerCYH tny briordan deanmalmgren soramame_0518
  • Integrated Protein Interaction Networks for 11 Microbes
    : Research in Computational Molecular Biology (2006), pp. 1-14.
    by Balaji S Srinivasan, Antal F Novak, Jason A Flannick, Serafim Batzoglou, Harley H Mcadams
    posted to heterogeneous-data-sources protein-protein-interactions systems-biology by nedwards on 2008-04-16 13:51:52 as ** along with 2 people carlk balajis
  • Current progress in network research: toward reference networks for key model organisms.
    Brief Bioinform (29 August 2007)
    by Balaji S S Srinivasan, Nigam H H Shah, Jason A A Flannick, Eduardo Abeliuk, Antal F F Novak, Serafim Batzoglou
    posted to heterogeneous-data-sources protein-protein-interactions systems-biology by nedwards on 2008-04-10 17:46:46 as ** along with 5 people and 1 group marck daed jyuh grahamc roys Bioinformatics
  • Protein-protein interaction networks and biology—what's the connection?
    Nature Biotechnology, Vol. 26, No. 1., pp. 69-72.
    by Luke Hakes, John W Pinney, David L Robertson, Simon C Lovell
    posted to protein-protein-interactions systems-biology by nedwards on 2008-04-16 14:50:00 as ** along with 14 people and 1 group paolomarcatili Yanno jyuh tmmurali jfr balicea dullhunk neils mikaelhuss cjeans biehl shikin mclarenv Yumyai GeneGo
  • PRIME: automatically extracted PRotein Interactions and Molecular Information databasE.
    In Silico Biol, Vol. 5, No. 1. (2005), pp. 9-20.
    by A Koike, T Takagi
    posted to protein-protein-interactions by natsu on 2005-12-24 07:54:43 as *** along with 3 people and 1 group irenas miguel blackbart dbk-lab
  • Discovering patterns to extract protein-protein interactions from the literature: Part II.
    Bioinformatics, Vol. 21, No. 15. (1 August 2005), pp. 3294-3300.
    by Y Hao, X Zhu, M Huang, M Li
    posted to protein-protein-interactions by natsu on 2005-12-24 07:31:03 as *** along with 1 person davidandrzej
  • Extracting human protein interactions from MEDLINE using a full-sentence parser.
    Bioinformatics, Vol. 20, No. 5. (22 March 2004), pp. 604-611.
    by N Daraselia, A Yuryev, S Egorov, S Novichkova, A Nikitin, I Mazo
    posted to protein-protein-interactions by natsu on 2006-03-24 02:57:09 as ** along with 4 people and 1 group irenas Enro miguel zlu dbk-lab
  • In Search of the Biological Significance of Modular Structures in Protein Networks
    PLoS Computational Biology, Vol. 3, No. 6. (1 June 2007), e107.
    by Zhi Wang, Jianzhi Zhang
    posted to networks protein-protein-interactions reviews systems-biology by massivemayhem on 2007-06-06 10:20:20 as ** along with 6 people and 2 groups pinney jfr grahamc cjeans zwang cabbagezs Bioinformatics ParkinsonLab_at_MaRS
  • Circuit diagrams for biological networks
    Mol Syst Biol, Vol. 2 (17 January 2006)
    by Kurt W Kohn, Mirit Aladjem
    posted to protein-protein-interactions networks algorithm by massivemayhem on 2007-01-18 10:49:35 as **
  • STRING 7--recent developments in the integration and prediction of protein interactions.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by C von Mering, LJ Jensen, M Kuhn, S Chaffron, T Doerks, B Krüger, B Snel, P Bork
    posted to protein-protein-interactions database by massivemayhem on 2007-01-16 18:14:13 as ** along with 9 people higueruelo carlk renatomilani jyuh kuhn balajis fisherp raiyar larsjuhljensen
  • Modular organization of protein interaction networks.
    Bioinformatics (8 November 2006)
    by Feng Luo, Yunfeng Yang, Chin-Fu F Chen, Roger Chang, Jizhong Zhou, Richard H H Scheuermann
    posted to protein-protein-interactions networks algorithm by massivemayhem on 2007-01-16 18:13:21 as ** along with 3 people and 1 group jfr grahamc maralena ParkinsonLab_at_MaRS
  • iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions
    Bioinformatics, Vol. 21, No. 3. (01 February 2005), 410.
    by Robert D Finn, Mhairi Marshall, Alex Bateman
    posted to protein-protein-interactions database by massivemayhem on 2007-01-15 21:37:38 as ** along with 5 people and 2 groups mdimmic barry chad_davis choonpeng antonkratz structural_bioinformatics Bioinformatics
  • Using process diagrams for the graphical representation of biological networks
    Nature Biotechnology, Vol. 23, No. 8. (04 August 2005), pp. 961-966.
    by Hiroaki Kitano, Akira Funahashi, Yukiko Matsuoka, Kanae Oda
    posted to protein-protein-interactions networks algorithm by massivemayhem on 2007-01-18 10:47:18 as ** along with 6 people csanford srp33 lenov pmendes dullhunk maralena
  • Discovering disease genes by topological features in human protein-protein interaction network.
    Bioinformatics (5 September 2006)
    by Jianzhen Xu, Yongjin Li
    posted to protein-protein-interactions networks disease algorithm by massivemayhem on 2007-01-16 18:11:04 as ** along with 3 people jyuh gespim iris_2001
  • UniHI: an entry gate to the human protein interactome.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by G Chaurasia, Y Iqbal, C Hänig, H Herzel, EE Wanker, ME Futschik
    posted to protein-protein-interactions interactome database by massivemayhem on 2007-01-15 21:34:31 as ** along with 3 people grahamc jyuh jfr
  • Protein-protein interaction site prediction based on conditional random fields.
    Bioinformatics (18 January 2007)
    by Ming-Hui H Li, Xiao-Long L Wang, Lei Lin, Tao Liu
    posted to protein-protein-interactions algorithm by massivemayhem on 2007-01-22 11:45:34 as **
  • Distinguishing structural and functional restraints in evolution in order to identify interaction sites.
    J Mol Biol, Vol. 342, No. 5. (1 October 2004), pp. 1487-1504.
    by V Chelliah, L Chen, TL Blundell, SC Lovell
    posted to protein-restraints protein-protein-interactions interaction-sites evolution by massivemayhem on 2007-01-18 11:09:34 as ** along with 8 people and 1 group chrn bicko rabio cat_worth MaggieYe medic0747 cjeans zwang structural_bioinformatics
  • Reactome: a knowledgebase of biological pathways.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by G Joshi-Tope, M Gillespie, I Vastrik, P D'Eustachio, E Schmidt, B de Bono, B Jassal, GR Gopinath, GR Wu, L Matthews, S Lewis, E Birney, L Stein
    posted to gene-function pathways protein-function protein-protein-interactions by massivemayhem on 2007-06-21 15:10:54 as ** along with 8 people and 1 group jyuh aalibes kuhn yas dullhunk duartemolha cerami yggdrasil T_lab
  • Detecting conserved interaction patterns in biological networks.
    J Comput Biol, Vol. 13, No. 7. (September 2006), pp. 1299-1322.
    by M Koyutürk, Y Kim, S Subramaniam, W Szpankowski, A Grama
    posted to protein-protein-interactions networks algorithm by massivemayhem on 2007-01-18 11:07:58 as ** along with 2 people and 1 group balajis mirzazadeh Bioinformatics
  • Insights into Protein-Protein Interfaces using a Bayesian Network Prediction Method
    Journal of Molecular Biology, Vol. In Press, Corrected Proof
    by James R Bradford, Chris J Needham, Andrew J Bulpitt, David R Westhead
    posted to protein-protein-interactions interfaces bayesian algorithm by massivemayhem on 2007-01-18 11:07:09 as ** along with 7 people and 2 groups paolomarcatili marti barry conkymacro ameetsoni grahamc phoenixzxl structural_bioinformatics Bioinformatics
  • Analysis of protein sequence and interaction data for candidate disease gene prediction.
    Nucleic Acids Res, Vol. 34, No. 19. (2006)
    by RA George, JY Liu, LL Feng, RJ Bryson-Richardson, D Fatkin, MA Wouters
    posted to protein-protein-interactions disease candidate-genes by massivemayhem on 2007-01-18 11:05:22 as ** along with 1 person and 1 group cat_worth structural_bioinformatics
  • Structural systems biology: modelling protein interactions
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 3., pp. 188-197.
    by Patrick Aloy, Robert B Russell
    posted to systems-biology structural-studies reviews protein-protein-interactions by massivemayhem on 2007-01-18 11:04:38 as ** along with 18 people and 3 groups higueruelo chad_davis ana aalibes bicko xico dgront drastic choonpeng henschel ruvido cat_worth fishtank iris_2001 gvuister lpfernandes Evangelia andreas_foersch structural_bioinformatics Bioinformatics WetBiology
  • Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by M Jayapandian, A Chapman, VG Tarcea, C Yu, A Elkiss, A Ianni, B Liu, A Nandi, C Santos, P Andrews, B Athey, D States, HV Jagadish
    posted to protein-protein-interactions database by massivemayhem on 2007-01-18 11:37:04 as ** along with 2 people jyuh cerami
  • An automated method for finding molecular complexes in large protein interaction networks.
    BMC Bioinformatics, Vol. 4, No. 1. (13 January 2003)
    by GD Bader, CW Hogue
    posted to protein-protein-interactions networks complexes algorithm by massivemayhem on 2007-01-16 08:55:17 as ** along with 4 people and 1 group carlk dragonrez lfriedl nirfriedman kdl
  • IntAct--open source resource for molecular interaction data.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by S Kerrien, Y Alam-Faruque, B Aranda, I Bancarz, A Bridge, C Derow, E Dimmer, M Feuermann, A Friedrichsen, R Huntley, C Kohler, J Khadake, C Leroy, A Liban, C Lieftink, L Montecchi-Palazzi, S Orchard, J Risse, K Robbe, B Roechert, D Thorneycroft, Y Zhang, R Apweiler, H Hermjakob
    posted to protein-protein-interactions database by massivemayhem on 2007-01-16 08:54:15 as ** along with 1 person balajis
  • MINT: the Molecular INTeraction database.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by A Chatr-aryamontri, A Ceol, LM Palazzi, G Nardelli, MV Schneider, L Castagnoli, G Cesareni
    posted to protein-protein-interactions database by massivemayhem on 2007-01-18 11:34:06 as **
  • The value of high quality protein-protein interaction networks for systems biology.
    Curr Opin Chem Biol, Vol. 10, No. 6. (December 2006), pp. 551-558.
    by U Stelzl, EE Wanker
    posted to systems-biology protein-protein-interactions networks by massivemayhem on 2007-01-18 10:58:25 as **
  • Revealing static and dynamic modular architecture of the eukaryotic protein interaction network
    Mol Syst Biol, Vol. 3 (24 April 2007)
    by Kakajan Komurov, Michael White
    posted to networks pathways protein-protein-interactions systems-biology by massivemayhem on 2007-04-26 14:20:06 as ** along with 7 people ellakat carlk tomhebbron nicoleq zwang mingzhi phoenixzxl
  • Odds ratio based multifactor-dimensionality reduction method for detecting gene-gene interactions
    Bioinformatics, Vol. 23, No. 1. (1 January 2007), pp. 71-76.
    by Yujin Chung, Seung Y Lee, Robert C Elston, Taesung Park
    posted to protein-protein-interactions genetics algorithm by massivemayhem on 2007-01-16 18:16:01 as ** along with 3 people jyuh Ayest shigepong
  • Targeting Protein-Protein Interactions with Small Molecules: Challenges and Perspectives for omputational Binding Epitope Detection and Ligand Finding
    Current Medicinal Chemistry, Vol. 13, No. 22. (September 2006), pp. 2607-2625.
    by Gonzalez-Ruiz, Domingo, Gohlke, Holger
    posted to protein-protein-interactions by dgruiz on 2006-09-01 07:18:21 as **** along with 2 people higueruelo aqeel
  • Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome.
    Genome Biol, Vol. 6, No. 5. (2005)
    by AK Ramani, RC Bunescu, RJ Mooney, EM Marcotte
    posted to protein-protein-interactions by davidandrzej on 2006-03-22 18:26:05 as read along with 16 people and 3 groups setar tmmurali dragonrez okarsligil lfriedl ccots balajis maryee brant opheliav wnpx rlhsiao bundschu mikaelhuss raiyar grahamc kdl Bioinformatics generif_paper
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