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所有的文献@标签 proj_assembly [48 articles]

当前文献的标签分类为: proj_assembly.
  • notes Structural modeling of protein interactions by analogy: application to PSD-95.
    PLoS Comput Biol, Vol. 2, No. 11. (10 November 2006)
    by D Korkin, FP Davis, F Alber, T Luong, MY Shen, V Lucic, MB Kennedy, A Sali
    posted to algorithm binding complexes docking modelling proj_assembly structure by chad_davis to the group structural_bioinformatics on 2008-05-28 10:32:13 as *** along with 1 person bicko
  • Structural characterization of components of protein assemblies by comparative modeling and electron cryo-microscopy.
    Journal of structural biology, Vol. 149, No. 2. (February 2005), pp. 191-203.
    by M Topf, ML Baker, B John, W Chiu, A Sali
    posted to algorithm alignment complexes data_integration em modelling proj_assembly structure by chad_davis to the group structural_bioinformatics on 2008-05-28 10:37:06 as **
  • Homology-based modeling of 3D structures of protein-protein complexes using alignments of modified sequence profiles.
    International journal of biological macromolecules (21 May 2008)
    by Petras J J Kundrotas, Marc F F Lensink, Emil Alexov
    posted to algorithm alignment binding complexes data_integration modelling proj_assembly structure by chad_davis to the group structural_bioinformatics on 2008-06-29 11:15:36 as **
  • Analyzing Protein Interaction Networks Using Structural Information
    Annual Review of Biochemistry, Vol. 77, No. 1. (2008)
    by Christina Kiel, Pedro Beltrao, Luis Serrano
    posted to structure review proj_interprets proj_assembly ppi networks embl data_integration by chad_davis to the group structural_bioinformatics on 2008-09-17 16:51:19 as *** along with 8 people Borelli bicko neils Evangelia grahamc paolomarcatili phoenixzxl zwang
  • Biological units and their effect upon the properties and prediction of protein-protein interactions.
    J Mol Biol, Vol. 364, No. 5. (15 December 2006), pp. 1118-1129.
    by ER Jefferson, TP Walsh, GJ Barton
    posted to annotation clustering complexes data_integration non-redundant proj_assembly review structure binding by chad_davis on 2008-04-21 12:40:18 as ** along with 1 person bicko
  • GraphCrunch: a tool for large network analyses
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Tijana Milenkovic, Jason Lai, Natasa Przulj
    posted to service proj_assembly networks download distributed clustering algorithm by chad_davis on 2008-10-06 16:41:38 as **** along with 7 people grahamc laughcry barriot jyuh maralena dullhunk ptrobajo
  • notes Fitting a Geometric Graph to a Protein-Protein Interaction Network.
    Bioinformatics (14 March 2008)
    by Desmond J J Higham, Marija Rasajski, Natasa Przulj
    posted to proj_assembly ppi networks algorithm by chad_davis on 2008-10-14 10:36:47 as *** along with 10 people and 1 group tmmurali AbnerCYH grahamc bootsy maralena scienbox lidaiqiang1981 paolomarcatili jyuh mariap3636 untranet
  • Using indirect protein-protein interactions for protein complex prediction.
    Journal of bioinformatics and computational biology, Vol. 6, No. 3. (June 2008), pp. 435-466.
    by HN Chua, K Ning, WK Sung, HW Leong, L Wong
    posted to algorithm clustering complexes networks proj_assembly binding by chad_davis on 2008-06-29 11:14:25 as ****
  • M-TASSER: an algorithm for protein quaternary structure prediction.
    Biophys J, Vol. 94, No. 3. (1 February 2008), pp. 918-928.
    by H Chen, J Skolnick
    posted to algorithm complexes proj_assembly structure by chad_davis on 2008-02-28 16:31:45 as read
  • Integrating Diverse Data for Structure Determination of Macromolecular Assemblies.
    Annu Rev Biochem (4 March 2008)
    by Frank Alber, Friedrich Förster, Dmitry Korkin, Maya Topf, Andrej Sali
    posted to algorithm complexes data_integration modelling proj_assembly review structure by chad_davis on 2008-03-10 08:49:35 as read along with 1 person phoenixzxl
  • notes Modifying the DPClus algorithm for identifying protein complexes based on new topological structures
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Min Li, Jianer Chen, Jianxin Wang, Bin Hu, Gang Chen
    posted to proj_assembly networks download complexes clustering algorithm by chad_davis on 2008-10-09 15:22:18 as **** along with 1 person neils
  • United we stand: combining structural methods
    Current Opinion in Structural Biology, Vol. In Press, Corrected Proof
    by Nathan P Cowieson, Bostjan Kobe, Jennifer L Martin
    posted to structure review proj_assembly data_integration complexes by chad_davis on 2008-09-13 10:54:58 as ***** along with 1 person paulschlesinger
  • Structure-based systems biology: a zoom lens for the cell.
    FEBS Lett, Vol. 579, No. 8. (21 March 2005), pp. 1854-1858.
    by P Aloy, RB Russell
    posted to embl proj_assembly review structure by chad_davis on 2006-01-11 14:24:58 as read along with 4 people and 2 groups karbak barry lyongu biosv structural_bioinformatics Bioinformatics
  • Understanding and Predicting Protein Assemblies With 3D Structures.
    Comparative and functional genomics, Vol. 4, No. 4. (2003), pp. 410-415.
    by P Aloy, RB Russell
    posted to algorithm classic complexes data_integration embl modelling proj_assembly structure binding by chad_davis on 2008-08-03 18:17:16 as read
  • Incorporating high-throughput proteomics experiments into structural biology pipelines: Identification of the low-hanging fruits.
    Proteomics, Vol. 8, No. 10. (19 May 2008), pp. 1959-1964.
    by Roland AA Pache, Patrick Aloy
    posted to complexes embl proj_assembly structure yeast by chad_davis on 2008-05-25 01:26:08 as *****
  • notes Assembly reflects evolution of protein complexes
    Nature (18 June 2008)
    by Emmanuel D Levy, Elisabetta B Erba, Carol V Robinson, Sarah A Teichmann
    posted to structure proj_assembly ppi experimental evolution complexes by chad_davis on 2008-10-14 14:51:52 as read along with 8 people psique marck paulschlesinger neils jwm zwang faion phoenixzxl
  • Designing succinct structural alphabets
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i182-189.
    by Shuai C Li, Dongbo Bu, Xin Gao, Jinbo Xu, Ming Li
    posted to algorithm alignment annotation chemistry feature_selection proj_assembly structure by chad_davis on 2008-07-05 16:11:37 as *** along with 1 person marck
  • The elusive yeast interactome.
    Genome Biol, Vol. 7, No. 6. (2006)
    by J Goll, P Uetz
    posted to complexes experimental networks proj_assembly review yeast binding by chad_davis on 2008-05-05 09:11:33 as *** along with 3 people maryee eukfn Evangelia
  • Real-Time Monitoring of Protein Complexes Reveals their Quaternary Organization and Dynamics.
    Chemistry & biology, Vol. 15, No. 3. (March 2008), pp. 246-253.
    by AJ Painter, N Jaya, E Basha, E Vierling, CV Robinson, JL Benesch
    posted to chemistry complexes experimental proj_assembly binding by chad_davis on 2008-04-16 17:24:51 as ***
  • The social network of a cell: Recent advances in interactome mapping.
    Biotechnology annual review, Vol. 14 (2008), pp. 1-28.
    by S Charbonnier, O Gallego, AC Gavin
    posted to data_integration embl networks proj_assembly review by chad_davis on 2008-07-09 19:38:51 as ****
  • notes An efficient algorithm for large-scale detection of protein families.
    Nucleic Acids Res, Vol. 30, No. 7. (1 April 2002), pp. 1575-1584.
    by AJ Enright, S Van Dongen, CA Ouzounis
    posted to toolkit proj_assembly networks download clustering algorithm by chad_davis on 2008-10-08 12:48:58 as ** along with 13 people and 2 groups camster operon knaseanka indigoviolet skhadar nirfriedman dgront entropy gcalda GustavoLacerda hpaces RebeccaHamer Borelli dbk-lab EisenLab
  • APID: Agile Protein Interaction DataAnalyzer.
    Nucleic acids research, Vol. 34, No. Web Server issue. (1 July 2006)
    by C Prieto, J De Las Rivas
    posted to service proj_interprets proj_assembly ppi networks download database data_integration by chad_davis on 2008-10-08 10:53:05 as *** along with 1 person satre
  • Protein Structure Fitting and Refinement Guided by Cryo-EM Density
    Structure, Vol. 16, No. 2. (12 February 2008), pp. 295-307.
    by Maya Topf, Keren Lasker, Ben Webb, Haim Wolfson, Wah Chiu, Andrej Sali
    posted to structure proj_assembly modelling data_integration complexes algorithm by chad_davis on 2008-10-08 16:10:16 as *****
  • Homology modelling of protein-protein complexes: a simple method and its possibilities and limitations
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Guillaume Launay, Thomas Simonson
    posted to structure proj_assembly modelling complexes binding algorithm by chad_davis on 2008-10-10 07:36:29 as *****
  • notes Inference of macromolecular assemblies from crystalline state.
    J Mol Biol, Vol. 372, No. 3. (21 September 2007), pp. 774-797.
    by E Krissinel, K Henrick
    posted to service algorithm annotation complexes database embl proj_assembly structure validation binding by chad_davis on 2008-07-13 16:28:44 as **** along with 1 person bicko
  • Structural characterization of assemblies from overall shape and subcomplex compositions.
    Structure, Vol. 13, No. 3. (March 2005), pp. 435-445.
    by F Alber, MF Kim, A Sali
    posted to structure proj_assembly ppi modelling data_integration complexes binding algorithm by chad_davis on 2008-10-08 15:51:24 as ***** along with 1 person faion
  • notes PRISM: protein interactions by structural matching.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by U Ogmen, O Keskin, AS Aytuna, R Nussinov, A Gursoy
    posted to service structure proj_interprets proj_assembly ppi binding algorithm by chad_davis on 2008-10-07 10:15:00 as ***** along with 4 people apaydin bicko j3xucite henschel
  • Improved network-based identification of protein orthologs.
    Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008)
    by N Yosef, R Sharan, WS Noble
    posted to proj_assembly networks evolution clustering annotation algorithm by chad_davis on 2008-10-15 09:16:29 as read along with 1 person grahamc
  • notes Bacterial cell division protein FtsZ assembles into protofilament sheets and minirings, structural homologs of tubulin polymers.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 93, No. 1. (9 January 1996), pp. 519-523.
    by HP Erickson, DW Taylor, KA Taylor, D Bramhill
    posted to complexes proj_assembly structure binding by chad_davis on 2008-07-07 16:07:55 as read
  • From pull-down data to protein interaction networks and com-plexes with biological relevance.
    Bioinformatics (26 February 2008)
    by Bing Zhang, Byung, Tatiana Karpinets, Nagiza FF Samatova
    posted to algorithm complexes networks proj_assembly binding by chad_davis on 2008-04-22 12:02:54 as *** along with 4 people jyuh grahamc kluck carlk
  • PSIbase: a database of Protein Structural Interactome map (PSIMAP)
    Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2541-2543.
    by Sungsam Gong, Giseok Yoon, Insoo Jang, Dan Bolser, Panos Dafas, Michael Schroeder, Hansol Choi, Yoobok Cho, Kyungsook Han, Sunghoon Lee, Hwanho Choi, Michael Lappe, Liisa Holm, Sangsoo Kim, Donghoon Oh, Jonghwa Bhak
    posted to service algorithm database proj_assembly structure binding by chad_davis on 2008-07-01 14:43:04 as read along with 1 person medic0747
  • Protein Complex Evolution Does Not Involve Extensive Network Rewiring
    PLoS Comput Biol, Vol. 4, No. 7. (25 July 2008), e1000132.
    by Teunis J van Dam, Berend Snel
    posted to complexes evolution proj_assembly structure by chad_davis on 2008-08-07 15:58:06 as ***** along with 1 person cabbagesofdoom
  • Subunit Architecture of Intact Protein Complexes from Mass Spectrometry and Homology Modeling
    Acc. Chem. Res. (4 March 2008)
    by Thomas Taverner, Helena Hernandez, Michal Sharon, Brandon T Ruotolo, Dijana M Vinkovic, Damien Devos, Robert B Russell, Carol V Robinson
    posted to algorithm complexes embl experimental modelling networks proj_assembly structure yeast binding by chad_davis on 2008-03-10 08:53:48 as read along with 1 person faion
  • Ensemble Non-negative Matrix Factorization Methods for Clustering Protein-Protein Interactions
    Bioinformatics (12 June 2008), btn286.
    by Derek Greene, Gerard Cagney, Nevan Krogan, Padraig Cunningham
    posted to algorithm clustering complexes ensemble proj_assembly binding by chad_davis on 2008-08-05 15:26:09 as *** along with 2 people zwang grahamc
  • notes STRING 7--recent developments in the integration and prediction of protein interactions.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by C von Mering, LJ Jensen, M Kuhn, S Chaffron, T Doerks, B Krüger, B Snel, P Bork
    posted to service proj_assembly ppi embl database data_integration classic by chad_davis on 2008-09-16 09:59:56 as *** along with 12 people wenhui jyuh kuhn balajis fisherp raiyar massivemayhem larsjuhljensen higueruelo renatomilani carlk bicko
  • PISCES: recent improvements to a PDB sequence culling server.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by G Wang, RL Dunbrack
    posted to service alignment database data_integration non-redundant proj_assembly structure by chad_davis on 2008-04-28 15:45:08 as **** along with 4 people kaarsinogen bicko blackbart chgjb
  • Interactome data and databases: different types of protein interaction.
    Comparative and functional genomics, Vol. 5, No. 2. (2004), pp. 173-178.
    by J De Las Rivas, A de Luis
    posted to review proj_interprets proj_assembly ppi networks by chad_davis on 2008-10-08 10:56:48 as ***
  • ProCope - Protein Complex Prediction and Evaluation
    Bioinformatics (17 July 2008), btn376.
    by Jan Krumsiek, Caroline C Friedel, Ralf Zimmer
    posted to service algorithm complexes data_integration proj_assembly structure toolkit by chad_davis on 2008-08-03 22:03:17 as read along with 2 people zwang jyuh
  • HOMCOS: a server to predict interacting protein pairs and interacting sites by homology modeling of complex structures.
    Nucleic acids research, Vol. 36, No. Web Server issue. (1 July 2008)
    by N Fukuhara, T Kawabata
    posted to service binding algorithm complexes modelling proj_assembly structure by chad_davis on 2008-08-21 16:31:17 as read along with 2 people jyuh bicko
  • Two Algorithms for Generating Weighted Spanning Trees in Order
    SIAM Journal on Computing, Vol. 6, No. 1. (1977), pp. 139-150.
    by Harold N Gabow
    posted to algorithm classic networks proj_assembly by chad_davis on 2008-03-22 13:26:47 as read
  • Computational methods for the prediction of protein interactions.
    Curr Opin Struct Biol, Vol. 12, No. 3. (June 2002), pp. 368-373.
    by A Valencia, F Pazos
    posted to review proj_interprets proj_assembly ppi algorithm by chad_davis on 2008-10-08 15:48:08 as *** along with 2 people eckart_bindewald marti
  • Combinatorial docking approach for structure prediction of large proteins and multi-molecular assemblies.
    Phys Biol, Vol. 2, No. 4. (November 2005)
    by Y Inbar, H Benyamini, R Nussinov, HJ Wolfson
    posted to algorithm complexes docking download modelling proj_assembly structure binding by chad_davis on 2008-05-28 10:23:55 as read along with 1 person bicko
  • PPiClust: EFFICIENT CLUSTERING OF 3D PROTEIN-PROTEIN INTERACTION INTERFACES.
    Journal of bioinformatics and computational biology, Vol. 6, No. 3. (June 2008), pp. 415-433.
    by Z Aung, SH Tan, SK Ng, KL Tan
    posted to algorithm clustering ppi proj_assembly proj_interprets structure by chad_davis on 2008-08-26 18:15:46 as ***** along with 1 person bicko
  • Structural systems biology: modelling protein interactions
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 3. (2006), pp. 188-197.
    by Patrick Aloy, Robert B Russell
    posted to embl networks proj_assembly review structure by chad_davis on 2006-04-06 18:45:43 as read along with 19 people and 3 groups ana aalibes bicko xico dgront drastic choonpeng henschel ruvido massivemayhem cat_worth fishtank iris_2001 gvuister lpfernandes Evangelia andreas_foersch higueruelo jteyra structural_bioinformatics Bioinformatics WetBiology
  • Subunit architecture of multimeric complexes isolated directly from cells
    EMBO Reports, Vol. aop, No. current. (18 August 2006)
    by Helena Hernandez, Andrzej Dziembowski, Thomas Taverner, Bertrand Seraphin, Carol V Robinson
    posted to classic complexes experimental networks proj_assembly structure yeast binding by chad_davis on 2008-04-21 14:01:55 as ** along with 1 person faion
  • DAPID: a 3D-domain annotated protein-protein interaction database.
    Genome informatics. International Conference on Genome Informatics, Vol. 17, No. 2. (2006), pp. 206-215.
    by YC Chen, HC Chen, JM Yang
    posted to structure service proj_interprets proj_assembly ppi database by chad_davis on 2008-08-26 18:18:15 as *** along with 1 person bicko
  • Taking advantage of local structure descriptors to analyze interresidue contacts in protein structures and protein complexes
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA.
    by Juliette Martin, Leslie Regad, Catherine Etchebest, Anne C Camproux
    posted to algorithm complexes feature_selection proj_assembly proj_interprets statistics structure binding by chad_davis on 2008-06-15 13:54:46 as *****
  • Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Andrew Bordner, Andrey Gorin
    posted to service structure proj_interprets proj_assembly non-redundant database clustering binding annotation by chad_davis on 2008-09-16 10:09:39 as **** along with 4 people jyuh neils phoenixzxl bicko
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