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所有的文献@标签 network_inference [45 articles]

当前文献的标签分类为: network_inference.
  • Predictive modeling of genome-wide mRNA expression: from modules to molecules
    Annu Rev Biophys Biomol Struct, Vol. 36 (2007), pp. 329-347.
    by HJ Bussemaker, BC Foat, LD Ward
    posted to biophysical_models cis-regulatory_logic cis-regulatory_modules crm expression network_inference psam regulation regulatory_networks review transcription by siebert on 2008-07-23 14:40:38 as read along with 1 person jyuh
  • Advances to Bayesian network inference for generating causal networks from observational biological data
    Bioinformatics, Vol. 20, No. 18. (2004), 3594.
    by Jing Yu, Anne V Smith, Paul P Wang, Alexander J Hartemink
    posted to bayesian_networks gene_expression_nw network_inference by roys on 2007-11-06 03:45:58 as ** along with 2 people csgillespie heliopais
  • Fast Network Component Analysis (FastNCA) for gene regulatory network reconstruction from microarray data.
    Bioinformatics (Oxford, England) (9 April 2008)
    by Chunqi Chang, Zhi Ding, Yeung Sam S Hung, Peter Chin Wan C Fung
    posted to network_inference by roys on 2008-05-19 16:38:46 as ** along with 3 people jyuh jfr AbnerCYH
  • The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo.
    Genome Biol, Vol. 7, No. 5. (2006)
    by R Bonneau, DJ Reiss, P Shannon, M Facciotti, L Hood, NS Baliga, V Thorsson
    posted to clustering network_inference by roys on 2008-08-13 17:22:54 as ** along with 5 people cswinburne dragonrez jfr frohike jo_davies
  • Large-Scale Mapping and Validation of Escherichia coli Transcriptional Regulation from a Compendium of Expression Profiles
    PLoS Biology, Vol. 5, No. 1. (1 January 2007), e8.
    by Jeremiah J Faith, Boris Hayete, Joshua T Thaden, Ilaria Mogno, Jamey Wierzbowski, Guillaume Cottarel, Simon Kasif, James J Collins, Timothy S Gardner
    posted to biological_networks ecoli network_inference by roys on 2008-08-13 03:22:03 as ** along with 7 people and 2 groups icases jfr teuder nickluscombe aswin heliopais austin EBI-regulation TNT
  • SIRENE: supervised inference of regulatory networks
    Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i76-82.
    by Fantine Mordelet, Jean-Philippe Vert
    posted to network_inference biological_networks by roys on 2008-09-12 05:47:23 as **
  • Constructing Bayesian network models of gene expression networks from microarray data
    (2000)
    by P Spirtes, C Glymour, R Scheines
    posted to bayesian_networks gene_expression_nw network_inference by roys on 2007-11-06 03:41:36 as **
  • Learning Bayesian Networks is NP-Hard
    No. MSR-TR-94-17. (November 1994)
    by David M Chickering, Dan Geiger, David Heckerman
    posted to bayesian_networks network_inference by roys on 2007-11-06 18:39:53 as ** along with 1 person tvdbulck
  • Inferring genetic networks and identifying compound mode of action via expression profiling.
    Science, Vol. 301, No. 5629. (4 July 2003), pp. 102-105.
    by TS Gardner, D di Bernardo, D Lorenz, JJ Collins
    posted to biological_networks network_inference regression by roys on 2007-11-06 03:51:48 as ** along with 10 people and 9 groups vertikalist rklancer kentsis dragonrez rhem1224 rubendrr adepace neveaire jayster4 heliopais BTS-PT-AS-CS Biostatistics Computational-Genomics Bioinformatics EisenLab Neuroscience TCR_Signaling cytoskeleton-and-afm SysbioMPI-TCells
  • Bayesian analysis of signaling networks governing embryonic stem cell fate decisions
    Bioinformatics, Vol. 21, No. 6. (15 March 2005), pp. 741-753.
    by J Woolf, Prudhomme Wendy, Daheron Laurence, Q Daley, A Lauffenburger
    posted to bayesian_networks network_inference signaling_nw by roys on 2007-11-06 04:15:30 as ** along with 1 person rmk
  • Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks.
    Nature genetics (15 June 2008)
    by Jun Zhu, Bin Zhang, Erin N N Smith, Becky Drees, Rachel B B Brem, Leonid Kruglyak, Roger E E Bumgarner, Eric E E Schadt
    posted to causality network_inference nw_modularity by roys on 2008-06-26 18:39:04 as ** along with 10 people realzhang kengg maralena ptrobajo tmmurali jyuh marck caseybrown djkt srp33
  • Current progress in network research: toward reference networks for key model organisms.
    Brief Bioinform (29 August 2007)
    by Balaji S S Srinivasan, Nigam H H Shah, Jason A A Flannick, Eduardo Abeliuk, Antal F F Novak, Serafim Batzoglou
    posted to network_inference review by roys on 2008-03-11 00:45:54 as ** along with 6 people and 1 group pengchy jyuh grahamc nedwards daed marck Bioinformatics
  • A Predictive Model for Transcriptional Control of Physiology in a Free Living Cell
    Cell, Vol. 131, No. 7. (28 December 2007), pp. 1354-1365.
    by Richard Bonneau, Marc T Facciotti, David J Reiss, Amy K Schmid, Min Pan, Amardeep Kaur, Vesteinn Thorsson, Paul Shannon, Michael H Johnson, Christopher J Bare, William Longabaugh, Madhavi Vuthoori, Kenia Whitehead, Aviv Madar, Lena Suzuki, Tetsuya Mori, Dong-Eun Chang, Jocelyne Diruggiero, Carl H Johnson, Leroy Hood, Nitin S Baliga
    posted to clustering network_inference by roys on 2008-08-13 17:23:25 as ** along with 8 people edwardmorrissey jyuh tmmurali raiyar oelemento emptyhb megraw Borelli
  • Comparative evaluation of reverse engineering gene regulatory networks with relevance networks, graphical gaussian models and bayesian networks
    Bioinformatics, Vol. 22, No. 20. (15 October 2006), pp. 2523-2531.
    by Werhli, V Adriano, Grzegorczyk, Marco, Husmeier, Dirk
    posted to bayesian_networks graphical_gaussian network_inference by roys on 2007-11-06 03:55:46 as ** along with 3 people czeller alokm Borelli
  • MinReg: A Scalable Algorithm for Learning Parsimonious Regulatory Networks in Yeast and Mammals
    J. Mach. Learn. Res., Vol. 7 (2006), pp. 167-189.
    by Dana Pe'er, Amos Tanay, Aviv Regev
    posted to bayesian_networks gene_expression_nw network_inference by roys on 2007-11-06 03:44:01 as **
  • Boolean dynamics of genetic regulatory networks inferred from microarray time series data
    Bioinformatics, Vol. 23, No. 7. (1 April 2007), pp. 866-874.
    by Martin, Shawn, Zhang, Zhaoduo, Martino, Anthony, Faulon, Jean-Loup
    posted to biological_networks boolean network_inference networks by roys on 2007-11-06 03:38:54 as **
  • Comparing association network algorithms for reverse engineering of large-scale gene regulatory networks: synthetic versus real data
    Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. 1640-1647.
    by Nicola Soranzo, Ginestra Bianconi, Claudio Altafini
    posted to comparitive_analysis network_inference nwsim by roys on 2007-12-14 06:21:44 as ** along with 2 people heliopais tmmurali
  • Linear Modeling of Genetic Networks from Experimental Data
    pp. 355-366.
    by EP van Someren, LFA Wessels, MJT Reinders
    posted to biological_networks network_inference regression by roys on 2007-11-06 03:49:52 as **
  • Reconstructing biological networks using conditional correlation analysis
    Bioinformatics, Vol. 21, No. 6. (15 March 2005), pp. 765-773.
    by Rice J Jeremy, Tu Yuhai, Stolovitzky Gustavo
    posted to conditional_correlation gene_expression_nw network_inference by roys on 2007-11-06 03:53:48 as **
  • Modularized learning of genetic interaction networks from biological annotations and mRNA expression data
    Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2739-2747.
    by Phil H Lee, Doheon Lee
    posted to bayesian_networks biological_networks network_inference scalable_nw_learning by roys on 2008-01-23 22:29:34 as ** along with 5 people beete saman_vp patrycja_missiuro naegele tvdbulck
  • Theory and Limitations of Genetic Network Inference from Microarray Data
    Annals of the New York Academy of Sciences, Vol. 1115, No. 1. (December 2007), pp. 51-72.
    by Adam A Margolin, Andrea Califano
    posted to mag network_inference nw_inference_method_comparison by roys on 2008-01-20 21:00:41 as read along with 1 person talponer
  • Hierarchical structure and the prediction of missing links in networks
    Nature, Vol. 453, No. 7191., pp. 98-101.
    by Aaron Clauset, Cristopher Moore, MEJ Newman
    posted to hierarchy network network_inference by jjray on 2008-04-30 21:28:34 as read along with 37 people kubyaddi pbull gtgt15 Ema jago cmor balicea kengg soramame_0518 deanmalmgren briordan hryk tny AbnerCYH cactus tmmurali akshat bryanhughes gagliol margaritis jyuh craigwilson06 cmmorel eyliu markusd elsantosneto pinney i-stevenson fbaroni nedwards apwesolowski Borelli ptrobajo dpf rds lfriedl sen_cheng
  • From the Cover: Modularity and community structure in networks
    PNAS, Vol. 103, No. 23. (6 June 2006), pp. 8577-8582.
    by MEJ Newman
    posted to method modularity network network_inference by jjray on 2008-06-24 17:17:28 as read along with 17 people and 3 groups aqeel ChaTo jfr yas balicea ddahlem cmm fukken kubyaddi adriandefroment gcalda hannu marcio phreeza Diego_Prada carlk ellakat T_lab FAB-lab ThinkTank
  • Chemical combination effects predict connectivity in biological systems
    Mol Syst Biol, Vol. 3 (27 February 2007)
    by Joseph Lehar, Grant R Zimmermann, Andrew S Krueger, Raymond A Molnar, Jebediah T Ledell, Adrian M Heilbut, Glenn F Short, Leanne C Giusti, Garry P Nolan, Omar A Magid, Margaret S Lee, Alexis A Borisy, Brent R Stockwell, Curtis T Keith
    posted to feedback mathematical_model network_inference synergistic_signals systems_approach by jjray on 2007-03-13 15:06:17 as *** along with 4 people aheilbut pbellec alexg daed
  • Mutual information relevance networks: functional genomic clustering using pairwise entropy measurements.
    Pac Symp Biocomput (2000), pp. 418-429.
    by AJ Butte, IS Kohane
    posted to genetic_regulatory_network information_theory network_inference by heliopais on 2008-01-16 13:45:04 as * along with 1 person cswinburne
  • A Robust Procedure For Gaussian Graphical Model Search From Microarray Data With <i>p</i> Larger Than <i>n</i>
    J. Mach. Learn. Res., Vol. 7 (2006), pp. 2621-2650.
    by Robert Castelo, Alberto Roverato
    posted to grn network_inference by heliopais on 2007-12-12 12:07:24 as ***
  • From correlation to causation networks: a simple approximate learning algorithm and its application to high-dimensional plant gene expression data
    BMC Systems Biology, Vol. 1, No. 1. (2007)
    by Rainer O Rhein, Korbinian Strimmer
    posted to grn network_inference by heliopais on 2007-12-12 12:11:42 as *** along with 3 people wnpx GeeSharpMinor jo_davies
  • Networking an organism
    Nature Methods, Vol. 5, No. 3. (March 2008), pp. 217-217.
    by Natalie de Souza
    posted to genetic_regulatory_network network_inference newsandviews by heliopais on 2008-06-18 10:12:32 as read
  • Reverse engineering of temporal Boolean networks from noisy data using evolutionary algorithms
    Neurocomputing, Vol. 62 (December 2004), pp. 111-129.
    by Carlos Cotta, Jose M Troya
    posted to grn network_inference by heliopais on 2007-12-12 16:20:49 as **
  • Least absolute regression network analysis of the murine osteoblast differentiation network
    Bioinformatics, Vol. 22, No. 4. (15 February 2006), pp. 477-484.
    by EP van Someren, BLT Vaes, WT Steegenga, AM Sijbers, KJ Dechering, MJT Reinders
    posted to grn network_inference by heliopais on 2007-12-12 16:26:11 as **
  • Overview of computational methods for the inference of gene regulatory networks
    Computers & Chemical Engineering, Vol. 29, No. 3. (15 February 2005), pp. 519-534.
    by Mark P Styczynski, Gregory Stephanopoulos
    posted to grn network_inference by heliopais on 2007-12-12 16:18:11 as **
  • Comparison of probabilistic Boolean network and dynamic Bayesian network approaches for inferring gene regulatory networks
    BMC Bioinformatics, Vol. 8, No. Suppl 7. (2007)
    by Peng Li, Chaoyang Zhang, Edward Perkins, Ping Gong, Youping Deng
    posted to grn network_inference by heliopais on 2007-12-12 12:25:35 as ** along with 1 person ivokwee
  • ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context.
    BMC Bioinformatics, Vol. 7, No. Suppl 1. (20 March 2006)
    by AA Margolin, I Nemenman, K Basso, C Wiggins, G Stolovitzky, Dalla R Favera, A Califano
    posted to grn network_inference by heliopais on 2007-12-12 11:40:05 as ** along with 5 people kentsis tmmurali jfr shigepong natstreet
  • A Boolean algorithm for reconstructing the structure of regulatory networks
    Metabolic Engineering, Vol. 6, No. 4. (October 2004), pp. 326-339.
    by Sarika Mehra, Wei-Shou Hu, George Karypis
    posted to grn network_inference by heliopais on 2007-12-12 16:24:27 as **
  • How to infer gene networks from expression profiles
    Mol Syst Biol, Vol. 3 (13 February 2007)
    by Mukesh Bansal, Vincenzo Belcastro, Alberto Ambesi-Impiombato, Diego di Bernardo
    posted to grn network_inference by heliopais on 2007-12-12 11:57:34 as ** along with 16 people and 2 groups druvus gabe_rosser cswinburne jfr eckart_bindewald wnpx nickluscombe kengg mikaelhuss jrbanga BIBLIOma RockHI lp2 natstreet mariakmejia tmmurali EBI-regulation Plantandetc
  • Boolean networks using the chi-square test for inferring large-scale gene regulatory networks
    BMC Bioinformatics, Vol. 8 (01 February 2007), 37.
    by Haseong Kim, Jae K Lee, Taesung Park
    posted to grn network_inference by heliopais on 2007-12-12 12:20:57 as ** along with 1 person shigepong
  • Reverse-engineering transcription control networks
    Physics of Life Reviews, Vol. 2, No. 1. (March 2005), pp. 65-88.
    by Timothy S Gardner, Jeremiah J Faith
    posted to grn network_inference by heliopais on 2007-12-12 11:46:32 as *** along with 2 people rklancer tmmurali
  • Construction, Visualisation, and Clustering of Transcription Networks from Microarray Expression Data
    PLoS Computational Biology, Vol. 3, No. 10. (1 October 2007), e206.
    by Tom C Freeman, Leon Goldovsky, Markus Brosch, Stijn van Dongen, Pierre Mazière, Russell J Grocock, Shiri Freilich, Janet Thornton, Anton J Enright
    posted to grn network_inference by heliopais on 2007-12-12 13:39:21 as **** along with 7 people nolodie jyuh jfr sebastien_vigneau giovanni shigepong waszak
  • Inferring cellular networks - a review
    BMC Bioinformatics, Vol. 8, No. Suppl 6. (27 September 2007)
    by Florian Markowetz, Rainer Spang
    posted to grn network_inference review by heliopais on 2007-12-12 12:02:59 as ** along with 7 people edwardmorrissey jyuh tmmurali shigepong dejori bertelsen czeller
  • Utility of correlation measures in analysis of gene expression.
    NeuroRx, Vol. 3, No. 3. (July 2006), pp. 384-395.
    by A Almudevar, LB Klebanov, X Qiu, P Salzman, AY Yakovlev
    posted to grn network_inference by heliopais on 2007-12-12 13:32:59 as ** along with 1 person jfr
  • Applying dynamic Bayesian networks to perturbed gene expression data.
    BMC Bioinformatics, Vol. 7 (2006)
    by N Dojer, A Gambin, A Mizera, B Wilczyński, J Tiuryn
    posted to grn network_inference by heliopais on 2007-12-12 12:18:58 as ** along with 3 people ivokwee tvdbulck ramakris
  • Regulatory Network Reconstruction Using Stochastic Logical Networks
    Computational Methods in Systems Biology (2006), pp. 142-154.
    by Bartek Wilczyński, Jerzy Tiuryn
    posted to grn network_inference by heliopais on 2007-12-12 13:27:00 as **
  • Identification of Genetic Networks
    Genetics, Vol. 166, No. 2. (1 February 2004), pp. 1037-1052.
    by Momiao Xiong, Jun Li, Xiangzhong Fang
    posted to grn network_inference by heliopais on 2007-12-12 12:17:27 as ** along with 1 person ivokwee
  • Bayesian network approach to cell signaling pathway modeling.
    Sci STKE, Vol. 2002, No. 148. (3 September 2002)
    by K Sachs, D Gifford, T Jaakkola, P Sorger, DA Lauffenburger
    posted to bayesian network_inference by dragonrez on 2007-05-18 01:56:50 as ** along with 3 people wnpx noano saman_vp
  • Size matters: network inference tackles the genome scale
    Mol Syst Biol, Vol. 3 (13 February 2007)
    by Boris Hayete, Timothy S Gardner, James J Collins
    posted to network_inference by dragonrez on 2007-05-18 01:46:29 as ** along with 2 people mikaelhuss cgaray
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