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所有的文献@标签 methodspaper [116 articles]

当前文献的标签分类为: methodspaper.
  • Broad network-based predictability of S. cerevisiae gene loss-of-function phenotypes
    Genome Biology, Vol. 8, No. 12. (2007)
    by Kriston Mcgary, Insuk Lee, Edward Marcotte
    posted to bioinformatics complex_trait disease genomics methodspaper model mutant network prediction yeast by raiyar on 2008-02-18 11:01:55 as *** along with 5 people jiny cjeans biomcgary barriot entropy
  • The human disease network
    PNAS, Vol. 104, No. 21. (22 May 2007), pp. 8685-8690.
    by Kwang-Il Goh, Michael E Cusick, David Valle, Barton Childs, Marc Vidal, Albert-Laszlo Barabasi
    posted to analysis bioinformatics disease genomics integration methodspaper network statistics systems by raiyar on 2007-05-27 00:38:43 as read along with 24 people and 8 groups Yanno jyuh aalibes cannin kuhn jfr yas balicea neveaire bundschu grahamc joepickrell leSyl henning dejori xingxu winterschlaefer naegele shoshin shikin nolodie mingzhi carlk yaredo Biostatistics Computational-Genomics Bioinformatics Neuroscience steinmetzlab ic4 generif_paper GomezLab
  • Computational prediction of subcellular localization.
    Methods Mol Biol, Vol. 390 (2007), pp. 429-466.
    by K Nakai, P Horton
    posted to bioinformatics localization methodspaper mitochondria prediction by raiyar on 2008-02-22 12:47:55 as **
  • SherLoc: high-accuracy prediction of protein subcellular localization by integrating text and protein sequence data.
    Bioinformatics, Vol. 23, No. 11. (1 June 2007), pp. 1410-1417.
    by H Shatkay, A Höglund, S Brady, T Blum, P Dönnes, O Kohlbacher
    posted to bioinformatics integration localization methodspaper prediction textmining by raiyar on 2008-01-07 22:20:45 as **** along with 2 people ptrobajo mdstobbe
  • Evidence for the presence of disease-perturbed networks in prostate cancer cells by genomic and proteomic analyses: a systems approach to disease.
    Cancer Res, Vol. 65, No. 8. (15 April 2005), pp. 3081-3091.
    by B Lin, JT White, W Lu, T Xie, AG Utleg, X Yan, EC Yi, P Shannon, I Khrebtukova, PH Lange, DR Goodlett, D Zhou, TJ Vasicek, L Hood
    posted to analysis disease ellstalk example genomics ht methodspaper network systems by raiyar on 2007-04-29 11:20:26 as ** along with 1 person and 1 group megraw steinmetzlab
  • Diagnostic challenges of mitochondrial DNA disorders.
    Mitochondrion, Vol. 7, No. 1-2. (r 2007), pp. 45-52.
    by LJ Wong
    posted to review mutant mtdna mitochondria methodspaper genetic disease diagnosis by raiyar on 2008-06-26 13:32:09 as **
  • Support vector machine approach for protein subcellular localization prediction.
    Bioinformatics (Oxford, England), Vol. 17, No. 8. (August 2001), pp. 721-728.
    by S Hua, Z Sun
    posted to prediction parts-list mitotarget methodspaper localization by raiyar on 2008-09-29 14:44:30 as **
  • Mapping mendelian factors underlying quantitative traits using RFLP linkage maps.
    Genetics, Vol. 121, No. 1. (January 1989), pp. 185-199.
    by ES Lander, D Botstein
    posted to analysis mendelian methodspaper qtl rflp by raiyar on 2007-10-16 10:58:23 as ***** along with 4 people and 1 group Ayest lp2 mcgannd dpollard RockmanLab
  • Mitochondria: dynamic organelles in disease, aging, and development.
    Cell, Vol. 125, No. 7. (30 June 2006), pp. 1241-1252.
    by DC Chan
    posted to aging development disease human methodspaper mitochondria review by raiyar on 2007-01-09 21:49:09 as ***** along with 1 person and 1 group inbetweener steinmetzlab
  • Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi.
    Nature, Vol. 414, No. 6862. (22 November 2001), pp. 450-453.
    by MD Katinka, S Duprat, E Cornillot, G Méténier, F Thomarat, G Prensier, V Barbe, E Peyretaillade, P Brottier, P Wincker, F Delbac, H El Alaoui, P Peyret, W Saurin, M Gouy, J Weissenbach, CP Vivarès
    posted to evolution genomics methodspaper mitochondria parts-list prediction by raiyar on 2008-04-25 15:19:22 as ** along with 1 person alexl
  • Predotar: A tool for rapidly screening proteomes for <B><I>N</I></B>-terminal targeting sequences
    PROTEOMICS, Vol. 4, No. 6. (2004), pp. 1581-1590.
    by Ian Small, Nemo Peeters, Fabrice Legeai, Claire Lurin
    posted to bioinformatics localization methodspaper mitochondria prediction by raiyar on 2008-02-22 10:10:50 as **
  • Subcellular localization of the yeast proteome
    Genes Dev., Vol. 16, No. 6. (15 March 2002), pp. 707-719.
    by Anuj Kumar, Seema Agarwal, John A Heyman, Sandra Matson, Matthew Heidtman, Stacy Piccirillo, Lara Umansky, Amar Drawid, Ronald Jansen, Yang Liu, Kei-Hoi Cheung, Perry Miller, Mark Gerstein, Shirleen G Roeder, Michael Snyder
    posted to genomics ht localization methodspaper mitochondria yeast by raiyar on 2007-01-19 14:20:09 as *** along with 3 people and 2 groups lfriedl gurkanbebek dbenn kdl steinmetzlab
  • Gaining confidence in high-throughput protein interaction networks.
    Nat Biotechnol, Vol. 22, No. 1. (January 2004), pp. 78-85.
    by JS Bader, A Chaudhuri, JM Rothberg, J Chant
    posted to ht interaction methodspaper network proteomics by raiyar on 2007-12-19 21:13:44 as **** along with 9 people and 1 group dragonrez lfriedl gurkanbebek cjeans iris_2001 patrycjam patrycja_missiuro Evangelia ellakat kdl
  • The MitoDrome database annotates and compares the OXPHOS nuclear genes of Drosophila melanogaster, Drosophila pseudoobscura and Anopheles gambiae.
    Mitochondrion, Vol. 6, No. 5. (October 2006), pp. 252-257.
    by D D'Elia, D Catalano, F Licciulli, A Turi, G Tripoli, D Porcelli, C Saccone, C Caggese
    posted to db drosophila methodspaper mitochondria parts-list by raiyar on 2008-04-22 00:23:01 as **
  • POCUS: mining genomic sequence annotation to predict disease genes
    Genome Biology, Vol. 4, No. 11. (2003)
    by Frances Turner, Daniel Clutterbuck, Colin Semple
    posted to analysis bioinformatics disease genetic genomics integration methodspaper by raiyar on 2007-12-19 21:15:38 as ****
  • A Bayesian system integrating expression data with sequence patterns for localizing proteins: comprehensive application to the yeast genome
    Journal of Molecular Biology, Vol. 301, No. 4. (25 August 2000), pp. 1059-1075.
    by Amar Drawid, Mark Gerstein
    posted to yeast statistics prediction parts-list methodspaper localization integration example by raiyar on 2008-10-01 13:11:47 as ** along with 1 person and 1 group lfriedl kdl
  • Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes.
    Am J Hum Genet, Vol. 78, No. 6. (June 2006), pp. 1011-1025.
    by L Franke, H Bakel, L Fokkens, ED de Jong, M Egmont-Petersen, C Wijmenga
    posted to bioinformatics disease genomics human interaction methodspaper network parts-list prediction by raiyar on 2007-11-16 13:04:02 as read along with 6 people and 1 group snuppepuppan jyuh lfriedl tabu samal mmt kdl
  • Building the mitochondrial proteome.
    Expert Rev Proteomics, Vol. 2, No. 4. (August 2005), pp. 541-551.
    by S Da Cruz, PA Parone, JC Martinou
    posted to methodspaper mitochondria proteomics technique by raiyar on 2008-04-01 15:38:36 as **
  • Systems biology, metabolic modelling and metabolomics in drug discovery and development
    Drug Discovery Today, Vol. 11, No. 23-24. (December 2006), pp. 1085-1092.
    by Douglas B Kell
    posted to genomics metabolic metabolic_profiling methodspaper model network prediction review systems by raiyar on 2007-05-02 12:44:16 as ** along with 9 people and 2 groups irenas nicklynch alexg dullhunk mhucka fishtank shikin alanrw gemmalholliday steinmetzlab GeneGo
  • Hap4p overexpression in glucose-grown Saccharomyces cerevisiae induces cells to enter a novel metabolic state.
    Genome Biol, Vol. 4, No. 1. (2003)
    by R Lascaris, HJ Bussemaker, A Boorsma, M Piper, H van der Spek, L Grivell, J Blom
    posted to diauxic expression genomics metabolic methodspaper mitochondria yeast by raiyar on 2007-01-19 15:47:08 as ** along with 1 group steinmetzlab
  • Mitochondrial Diseases in Man and Mouse
    Science, Vol. 283, No. 5407. (5 March 1999), pp. 1482-1488.
    by Douglas C Wallace
    posted to basis disease human methodspaper mitochondria review by raiyar on 2008-04-21 13:12:31 as **
  • MPV17 encodes an inner mitochondrial membrane protein and is mutated in infantile hepatic mitochondrial DNA depletion
    Nature Genetics, Vol. 38, No. 5. (02 April 2006), pp. 570-575.
    by Antonella Spinazzola, Carlo Viscomi, Erika Fernandez-Vizarra, Franco Carrara, Pio D'Adamo, Sarah Calvo, René M Marsano, Claudia Donnini, Hans Weiher, Pietro Strisciuglio, Rossella Parini, Emmanuelle Sarzi, Alicia Chan, Salvatore Dimauro, Agnes Rötig, Paolo Gasparini, Iliana Ferrero, Vamsi K Mootha, Valeria Tiranti, Massimo Zeviani
    posted to mtdna mitochondria methodspaper integration im human genetic example disease by raiyar on 2008-01-14 14:25:35 as ***
  • An RNAi screen for mitochondrial proteins required to maintain the morphology of the organelle in C. elegans.
    J Biochem (2 January 2008)
    by Ryohei Ichishita, Kousuke Tanaka, Yoshimi Sugiura, Tomoko Sayano, Katsuyoshi Mihara, Toshihiko Oka
    posted to methodspaper mitochondria rnai by raiyar on 2008-02-22 12:42:29 as ** along with 1 person and 1 group tharris C. elegans / WormBase
  • Protein networks in disease
    Genome Res., Vol. 18, No. 4. (1 April 2008), pp. 644-652.
    by Trey Ideker, Roded Sharan
    posted to disease ellstalk methodspaper network prediction proteomics by raiyar on 2008-06-19 15:46:55 as *** along with 20 people giovenko jyuh balicea tmmurali Borelli jwdietrich frohike bootsy nedwards roys mclarenv phoenixzxl brianb schuylrp jfr paolomarcatili gracio thomaskelder ptrobajo zwang
  • MITOPRED: a web server for the prediction of mitochondrial proteins.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by C Guda, P Guda, E Fahy, S Subramaniam
    posted to bioinformatics human methodspaper mitochondria prediction yeast by raiyar on 2008-02-22 10:03:41 as **
  • Systems analysis of energy metabolism elucidates the affected respiratory chain complex in Leigh's syndrome
    Molecular Genetics and Metabolism, Vol. 91, No. 1. (May 2007), pp. 15-22.
    by Thuy D Vo, Paul, Bernhard O Palsson
    posted to bioinformatics disease metabolic methodspaper model network systems by raiyar on 2007-03-21 12:53:19 as read along with 1 group steinmetzlab
  • Evaluation of predicted network modules in yeast metabolism using NMR-based metabolite profiling.
    Genome Res, Vol. 17, No. 4. (April 2007), pp. 510-519.
    by JG Bundy, B Papp, R Harmston, RA Browne, EM Clayson, N Burton, RJ Reece, SG Oliver, KM Brindle
    posted to bioinformatics deletion metabolic_profiling methodspaper model network prediction technique yeast by raiyar on 2007-06-08 09:33:01 as ***** along with 2 people and 1 group fishtank alexg steinmetzlab
  • Integrating protein-protein interactions and text mining for protein function prediction
    BMC Bioinformatics, Vol. 9, No. Suppl 8. (2008)
    by Samira Jaeger, Sylvain Gaudan, Ulf Leser, Dietrich R Schuhmann
    posted to tool textmining methodspaper interaction integration genomics by raiyar on 2008-09-29 16:53:13 as ** along with 6 people farzanehs jiny bootsy reyez phoenixzxl jyuh
  • MPact: the MIPS protein interaction resource on yeast.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by U Güldener, M Münsterkötter, M Oesterheld, P Pagel, A Ruepp, HW Mewes, V Stümpflen
    posted to db interaction methodspaper yeast by raiyar on 2008-04-14 14:14:26 as ** along with 2 people chad_davis carlk
  • Yeast models of human mitochondrial diseases: from molecular mechanisms to drug screening.
    Biotechnol J, Vol. 1, No. 3. (March 2006), pp. 270-281.
    by C Schwimmer, M Rak, L Lefebvre-Legendre, S Duvezin-Caubet, G Plane, JP di Rago
    posted to compound disease methodspaper mitochondria model narp projmt review sgtcnih by raiyar on 2008-01-21 10:33:47 as *****
  • PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization.
    Trends Biochem Sci, Vol. 24, No. 1. (January 1999), pp. 34-36.
    by K Nakai, P Horton
    posted to basis bioinformatics localization methodspaper mitochondria prediction by raiyar on 2008-02-22 10:07:57 as **
  • Disease gene discovery through integrative genomics.
    Annu Rev Genomics Hum Genet, Vol. 6 (2005), pp. 381-406.
    by C Giallourakis, C Henson, M Reich, X Xie, VK Mootha
    posted to complex_trait disease genetic genomics integration mendelian methodspaper network by raiyar on 2007-11-16 13:10:04 as ***** along with 1 person jo_davies
  • Variations in DNA elucidate molecular networks that cause disease
    Nature (16 March 2008)
    by Yanqing Chen, Jun Zhu, Pek Y Lum, Xia Yang, Shirly Pinto, Douglas J Macneil, Chunsheng Zhang, John Lamb, Stephen Edwards, Solveig K Sieberts, Amy Leonardson, Lawrence W Castellini, Susanna Wang, Marie-France Champy, Bin Zhang, Valur Emilsson, Sudheer Doss, Anatole Ghazalpour, Steve Horvath, Thomas A Drake, Aldons J Lusis, Eric E Schadt
    posted to disease expression genetic human methodspaper model network qtl systems by raiyar on 2008-04-15 13:10:34 as read along with 14 people and 1 group brianb jbsaltz djkt lp2 jo_davies shikin caseybrown ptrobajo jyuh echinotrix natstreet sanchezbuelna jfr chrisamiller GeneGo
  • Integrated genomic and proteomic analyses of a systematically perturbed metabolic network.
    Science, Vol. 292, No. 5518. (4 May 2001), pp. 929-934.
    by T Ideker, V Thorsson, JA Ranish, R Christmas, J Buhler, JK Eng, R Bumgarner, DR Goodlett, R Aebersold, L Hood
    posted to analysis array bioinformatics deletion expression genomics integration methodspaper model network proteomics systems yeast by raiyar on 2007-05-26 18:25:14 as ***** along with 11 people and 3 groups isimpson snuppepuppan BioGeek dragonrez bpb okarsligil opheliav wnpx gurkanbebek thomaskelder shikin Bioinformatics steinmetzlab GeneGo
  • A genetic approach to identifying mitochondrial proteins.
    Nature biotechnology, Vol. 21, No. 3. (March 2003), pp. 287-293.
    by T Ozawa, Y Sako, M Sato, T Kitamura, Y Umezawa
    posted to genetic ht methodspaper mitochondria parts-list technique by raiyar on 2008-04-14 13:51:15 as **
  • A mitochondrial paradigm of metabolic and degenerative diseases, aging, and cancer: a dawn for evolutionary medicine.
    Annu Rev Genet, Vol. 39 (2005), pp. 359-407.
    by DC Wallace
    posted to tac2 sgtcnih review projmt mutant mitochondria methodspaper human disease by raiyar on 2007-01-19 11:44:27 as *** along with 1 group steinmetzlab
  • MitoProteome: mitochondrial protein sequence database and annotation system.
    Nucleic acids research, Vol. 32, No. Database issue. (1 January 2004)
    by D Cotter, P Guda, E Fahy, S Subramaniam
    posted to db methodspaper mitochondria parts-list proteomics by raiyar on 2008-04-22 00:02:09 as **
  • Global organellar proteomics
    Trends in Biotechnology, Vol. 21, No. 2. (February 2003), pp. 82-88.
    by Steven W Taylor, Eoin Fahy, Soumitra S Ghosh
    posted to genomics human methodspaper mitochondria parts-list review sgtcnih yeast by raiyar on 2008-02-19 14:23:06 as ** along with 1 person and 1 group marie-aline ecotoxurbo
  • Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders.
    Nucleic Acids Res, Vol. 33 Database Issue (1 January 2005)
    by A Hamosh, AF Scott, JS Amberger, CA Bocchini, VA McKusick
    posted to db disease methodspaper by raiyar on 2008-04-30 16:00:59 as ** along with 6 people jyuh devakiram miguel chad_davis Nilza roys
  • Global analysis of protein expression in yeast.
    Nature, Vol. 425, No. 6959. (16 October 2003), pp. 737-741.
    by S Ghaemmaghami, WK Huh, K Bower, RW Howson, A Belle, N Dephoure, EK O'Shea, JS Weissman
    posted to ht methodspaper proteomics yeast by raiyar on 2008-04-21 21:45:10 as ** along with 9 people rebeccahainess nirfriedman nm nicoleq roys michaelbarton faion dylanwalker chasmand
  • Maximizing the potential of functional genomics.
    Nat Rev Genet, Vol. 5, No. 3. (March 2004), pp. 190-201.
    by LM Steinmetz, RW Davis
    posted to bioinformatics genomics integration methodspaper review by raiyar on 2007-09-12 21:26:03 as read along with 1 group steinmetzlab
  • The role of the 3' untranslated region in mRNA sorting to the vicinity of mitochondria is conserved from yeast to human cells.
    Molecular biology of the cell, Vol. 14, No. 9. (September 2003), pp. 3848-3856.
    by J Sylvestre, A Margeot, C Jacq, G Dujardin, M Corral-Debrinski
    posted to yeast parts-list mitotarget mitochondria methodspaper localization human by raiyar on 2008-09-29 14:13:30 as **
  • Detecting multiple associations in genome-wide studies.
    Hum Genomics, Vol. 2, No. 5. (March 2006), pp. 310-317.
    by F Dudbridge, A Gusnanto, BP Koeleman
    posted to complex_trait disease genomics methodspaper prediction review by raiyar on 2007-12-19 21:11:37 as ****
  • Systems biology and new technologies enable predictive and preventative medicine.
    Science, Vol. 306, No. 5696. (22 October 2004), pp. 640-643.
    by L Hood, JR Heath, ME Phelps, B Lin
    posted to disease ellstalk integration methodspaper model review systems by raiyar on 2007-12-18 01:46:34 as read along with 6 people and 1 group wnpx cconboy maburkitt shikin AlexanderPico megraw GeneGo
  • The BioGRID Interaction Database: 2008 update.
    Nucleic Acids Res, Vol. 36, No. Database issue. (January 2008)
    by BJ Breitkreutz, C Stark, T Reguly, L Boucher, A Breitkreutz, M Livstone, R Oughtred, DH Lackner, J Bähler, V Wood, K Dolinski, M Tyers
    posted to yeast tool methodspaper interaction db by raiyar on 2008-10-02 14:31:06 as ** along with 1 person jyuh
  • Systems biology of SNPs
    Mol Syst Biol, Vol. 2 (4 July 2006), pp. E1-E4.
    by Neema Jamshidi, Bernhard O Palsson
    posted to human metabolic methodspaper mitochondria model snp systems by raiyar on 2007-01-08 15:09:35 as read along with 6 people and 5 groups dchughes massivemayhem cat_worth dbgrant jo_davies michaelbarton structural_bioinformatics G4ID steinmetzlab Genetics-of-Gambling BergmanLab
  • Building the power house: recent advances in mitochondrial studies through proteomics and systems biology.
    Am J Physiol Cell Physiol, Vol. 292, No. 1. (January 2007)
    by TD Vo, BO Palsson
    posted to bioinformatics methodspaper mitochondria proteomics review systems by raiyar on 2007-05-14 16:54:33 as **** along with 2 people and 1 group jyuh kristen steinmetzlab
  • Walking the Interactome for Prioritization of Candidate Disease Genes
    The American Journal of Human Genetics, Vol. In Press, Corrected Proof
    by Sebastian Kohler, Sebastian Bauer, Denise Horn, Peter N Robinson
    posted to disease genetic interaction methodspaper network prediction by raiyar on 2008-06-23 15:12:21 as ** along with 4 people jfr kluck daed jyuh
  • Genetic Determinants of Mitochondrial Response to Arsenic in Yeast Saccharomyces cerevisiae.
    Cancer Res, Vol. 67, No. 20. (15 October 2007), pp. 9740-9749.
    by M Vujcic, M Shroff, KK Singh
    posted to methodspaper mitochondria toxin yeast by raiyar on 2007-10-22 09:22:49 as *** along with 1 person jyuh
  • Comparative assessment of large-scale data sets of protein-protein interactions.
    Nature, Vol. 417, No. 6887. (23 May 2002), pp. 399-403.
    by C von Mering, R Krause, B Snel, M Cornell, SG Oliver, S Fields, P Bork
    posted to bioinformatics ht integration interaction methodspaper yeast by raiyar on 2008-02-22 12:21:03 as ** along with 21 people and 6 groups camster barry dragonrez bicko lfriedl chad_davis alexg j3xucite bundschu yeastyboy ruvido grahamc iris_2001 cmor shu Evangelia shikin Pao-Yang carlk cerca ethkim dbk-lab structural_bioinformatics kdl Bioinformatics generif_paper GeneGo
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