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所有的文献@标签 data_integration [112 articles]

当前文献的标签分类为: data_integration.
  • The properties of high-dimensional data spaces: implications for exploring gene and protein expression data
    Nat Rev Cancer, Vol. 8, No. 1. (January 2008), pp. 37-49.
    by Robert Clarke, Habtom W Ressom, Antai Wang, Jianhua Xuan, Minetta C Liu, Edmund A Gehan, Yue Wang
    posted to data_integration gene_expression_mining by tmmurali on 2007-12-21 15:24:06 as ***** along with 9 people and 1 group jfr jyuh dwf frohike cjeans nedwards shikin blackm0k brianb Bioinformatics
  • A data integration methodology for systems biology.
    Proc Natl Acad Sci U S A (21 November 2005)
    by Daehee Hwang, Alistair G G Rust, Stephen Ramsey, Jennifer J J Smith, Deena M M Leslie, Andrea D D Weston, Pedro de Atauri, John D D Aitchison, Leroy Hood, Andrew F F Siegel, Hamid Bolouri
    posted to data_integration by tmmurali on 2005-11-29 22:00:58 as ***** along with 17 people and 3 groups brian dragonrez okarsligil jfr lfriedl Schmidtc eweaver wnpx biosv Sharpshoot noano mbeautru reidy grahamc GeeSharpMinor nedwards athleem kdl Bioinformatics JJJ
  • Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks.
    Nature genetics (15 June 2008)
    by Jun Zhu, Bin Zhang, Erin N N Smith, Becky Drees, Rachel B B Brem, Leonid Kruglyak, Roger E E Bumgarner, Eric E E Schadt
    posted to actex data_integration reverse_engineering transcriptional_regulatory_networks by tmmurali on 2008-06-18 14:56:33 as ***** along with 10 people realzhang kengg maralena ptrobajo jyuh roys marck caseybrown djkt srp33
  • Evaluation and integration of 49 genome-wide experiments and the prediction of previously unknown obesity-related genes
    Bioinformatics, Vol. 23, No. 21. (1 November 2007), pp. 2910-2917.
    by Sangeeta B English, Atul J Butte
    posted to data_integration gene_expression_compendium gene_expression_mining by tmmurali on 2007-11-17 18:31:05 as ***** along with 5 people yaredo jfr nedwards barriot jyuh
  • A statistical framework for genomic data fusion.
    Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2626-2635.
    by GR Lanckriet, TD De Bie, N Cristianini, MI Jordan, WS Noble
    posted to data_integration gene-function-prediction by tmmurali on 2005-06-14 15:56:53 as read along with 6 people jfr mbeautru nedwards carlk ptrobajo mdstobbe
  • Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks
    BMC Bioinformatics, Vol. 7 (02 June 2006), 280.
    by David J Reiss, Nitin S Baliga, Richard Bonneau
    posted to biclustering data_integration by tmmurali on 2008-08-07 15:10:41 as ** along with 1 person frohike
  • Modeling cellular machinery through biological network comparison
    Nature Biotechnology, Vol. 24, No. 4. (06 April 2006), pp. 427-433.
    by Roded Sharan, Trey Ideker
    posted to data_integration active-networks network-legos by tmmurali on 2006-04-07 16:52:34 as ***** along with 17 people and 2 groups isimpson kuhn tuck yas balajis wnpx ma_ko gurkanbebek koller gcalda grahamc massivemayhem karfunkel mingzhi vietanh0 cdeane carlk T_lab ParkinsonLab_at_MaRS
  • Increasing the Power to Detect Causal Associations by Combining Genotypic and Expression Data in Segregating Populations
    PLoS Computational Biology, Vol. 3, No. 4. (1 April 2007), e69.
    by Jun Zhu, Matthew C Wiener, Chunsheng Zhang, Arthur Fridman, Eric Minch, Pek Y Lum, Jeffrey R Sachs, Eric E Schadt
    posted to actex data_integration reverse_engineering by tmmurali on 2008-07-07 21:18:33 as ** along with 6 people brianb jfr hms jo_davies semrich beete
  • A data integration methodology for systems biology: Experimental verification
    PNAS, Vol. 102, No. 48. (29 November 2005), pp. 17302-17307.
    by Daehee Hwang, Jennifer J Smith, Deena M Leslie, Andrea D Weston, Alistair G Rust, Stephen Ramsey, Pedro de Atauri, Andrew F Siegel, Hamid Bolouri, John D Aitchison, Leroy Hood
    posted to data_integration by tmmurali on 2005-11-29 22:05:00 as ***** along with 11 people and 2 groups winterschlaefer Retchless dragonrez okarsligil lfriedl lyongu eweaver wnpx mbeautru GeeSharpMinor nedwards kdl Bioinformatics
  • The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications
    BMC Bioinformatics, Vol. 8 (19 November 2007), 456.
    by Christopher J Bare, Paul T Shannon, Amy K Schmid, Nitin S Baliga
    posted to data_integration web_services by srp33 on 2008-08-22 18:31:50 as ** along with 9 people and 1 group jyuh jfr dullhunk neils ryanraaum mircea selatham megraw chad_davis NCCT Lab Reading Group
  • Reconstructing gene regulatory networks with bayesian networks by combining expression data with multiple sources of prior knowledge.
    Stat Appl Genet Mol Biol, Vol. 6 (2007)
    by AV Werhli, D Husmeier
    posted to bayesian_networks biological_networks data_integration by roys on 2008-05-17 01:55:56 as ** along with 1 person edwardmorrissey
  • Corrigendum to "Concurrent EEG/fMRI analysis by multiway partial least squares" [NeuroImage 22 (2004) 1023-1034]
    NeuroImage, Vol. 26, No. 3. (1 July 2005), pp. 973-973.
    by Eduardo Martínez-Montes, Pedro A Valdés-Sosa, Fumikazu Miwakeichi, Robin I Goldman, Mark S Cohen
    posted to data_integration neuroscience by roys on 2008-06-23 00:20:24 as **
  • Dynamic analysis of integrated signaling, metabolic, and regulatory networks.
    PLoS computational biology, Vol. 4, No. 5. (May 2008)
    by J Min Lee, EP Gianchandani, JA Eddy, JA Papin
    posted to biological_networks data_integration metabolic_nw regulatory_nw signaling_nw by roys on 2008-06-08 02:57:39 as ** along with 7 people raik jyuh Borelli nolodie bootsy lymxz Ema
  • Anatomy of data integration.
    J Biomed Inform, Vol. 40, No. 3. (June 2007), pp. 252-269.
    by O Brazhnik, JF Jones
    posted to data_integration by pinney on 2008-09-10 10:39:57 as *** along with 4 people jyuh jandot Simplicity nicklynch
  • Modern computational approaches for analysing molecular genetic variation data
    Nature Reviews Genetics, Vol. 7, No. 10., pp. 759-770.
    by Paul Marjoram, Simon Tavaré
    posted to data_integration review statistical tutorial by phoenixzxl on 2008-08-06 08:11:53 as **** along with 4 people psique jyuh jermth ramakris
  • Integrative approach for computationally inferring protein domain interactions.
    Bioinformatics, Vol. 19, No. 8. (22 May 2003), pp. 923-929.
    by SK Ng, Z Zhang, SH Tan
    posted to data_integration prediction_ddi by phoenixzxl on 2008-03-14 07:35:10 as ** along with 3 people dyermd antonkratz carlk
  • Integrating Diverse Data for Structure Determination of Macromolecular Assemblies.
    Annu Rev Biochem (4 March 2008)
    by Frank Alber, Friedrich Förster, Dmitry Korkin, Maya Topf, Andrej Sali
    posted to complex data_integration review by phoenixzxl on 2008-07-16 02:08:04 as **** along with 1 person chad_davis
  • Network modeling links breast cancer susceptibility and centrosome dysfunction.
    Nat Genet (7 October 2007)
    by Miguel Angel A Pujana, Jing-Dong J D Han, Lea M M Starita, Kristen N N Stevens, Muneesh Tewari, Jin Sook S Ahn, Gad Rennert, Víctor Moreno, Tomas Kirchhoff, Bert Gold, Volker Assmann, Wael M M Elshamy, Jean-François F Rual, Douglas Levine, Laura S S Rozek, Rebecca S S Gelman, Kristin C C Gunsalus, Roger A A Greenberg, Bijan Sobhian, Nicolas Bertin, Kavitha Venkatesan, Nono Ayivi-Guedehoussou, Xavier Solé, Pilar Hernández, Conxi Lázaro, Katherine L L Nathanson, Barbara L L Weber, Michael E E Cusick, David E E Hill, Kenneth Offit, David M M Livingston, Stephen B B Gruber, Jeffrey D D Parvin, Marc Vidal
    posted to data_integration network_ppi peruse by phoenixzxl on 2008-04-07 09:49:30 as ** along with 6 people and 1 group jfr ealloza cjeans nedwards jdiezperezj chrisamiller BioinfoCIPF
  • A map of human protein interactions derived from co-expression of human mRNAs and their orthologs
    Mol Syst Biol, Vol. 4 (15 April 2008)
    by Arun K Ramani, Zhihua Li, Traver G Hart, Mark W Carlson, Daniel R Boutz, Edward M Marcotte
    posted to data_integration gene_expression prediction_ppi by phoenixzxl on 2008-04-16 02:12:11 as **** along with 9 people and 1 group druvus jeremymiller tmmurali biomcgary zwang giovanni grahamc ardalby ptrobajo OPIG
  • PRINCESS: a PRotein INteraction Confidence Evaluation System with multiple data Sources.
    Mol Cell Proteomics (29 January 2008)
    by Dong Li, Wanlin Liu, Zhongyang Liu, Jian Wang, Qijun Liu, Yunping Zhu, Fuchu He
    posted to bayesian data_integration by phoenixzxl on 2008-08-27 08:10:06 as *** along with 2 people jyuh kluck
  • An integrated view of protein evolution
    Nature Reviews Genetics, Vol. 7, No. 5., pp. 337-348.
    by Csaba Pál, Balázs Papp, Martin J Lercher
    posted to data_integration evolution protein review by phoenixzxl on 2008-08-06 08:00:42 as *** along with 7 people and 2 groups icases dayjm tny entropy markbothwell BioNica mingzhi Bothwellab TNT
  • Studying complex biological systems using multifactorial perturbation.
    Nat Rev Genet, Vol. 4, No. 2. (February 2003), pp. 145-151.
    by RC Jansen
    posted to data_integration review simulation by phoenixzxl on 2008-08-06 08:12:52 as **** along with 5 people snuppepuppan tmmurali jfr samal qfwills
  • Exon level integration of proteomics and microarray data
    BMC Bioinformatics, Vol. 9 (25 February 2008), 118.
    by Danny A Bitton, Michal J Okoniewski, Yvonne Connolly, Crispin J Miller
    posted to data_integration by phoenixzxl on 2008-04-11 03:50:06 as ** along with 5 people jo_davies jyuh thomaskelder huali jfr
  • Predicting Pathway Membership via Domain Signatures
    Bioinformatics (1 August 2008), btn403.
    by Holger Frohlich, Mark Fellmann, Holger Sultmann, Annemarie Poustka, Tim Beissbarth
    posted to data_integration machine_learning structure_aided svm by phoenixzxl on 2008-08-04 07:17:20 as *** along with 4 people barriot ptrobajo mdstobbe jyuh
  • Assessing the limits of genomic data integration for predicting protein networks.
    Genome Res, Vol. 15, No. 7. (July 2005), pp. 945-953.
    by LJ Lu, Y Xia, A Paccanaro, H Yu, M Gerstein
    posted to data_integration insight network_ppi by phoenixzxl on 2008-06-28 09:13:00 as **** along with 13 people and 2 groups okarsligil lfriedl balajis maryee opheliav wnpx mbeautru eukfn grahamc nedwards brianb iris_2001 carlk kdl Bioinformatics
  • Probabilistic model of the human protein-protein interaction network
    Nature Biotechnology, Vol. 23, No. 8., pp. 951-959.
    by Daniel R Rhodes, Scott A Tomlins, Sooryanarayana Varambally, Vasudeva Mahavisno, Terrence Barrette, Shanker Kalyana-Sundaram, Debashis Ghosh, Akhilesh Pandey, Arul M Chinnaiyan
    posted to data_integration network_ppi by phoenixzxl on 2008-04-07 09:42:16 as ** along with 12 people and 2 groups kentsis lfriedl balajis opheliav wnpx nickluscombe eukfn iris_2001 antonkratz mingzhi maralena penpen926 kdl EBI-regulation
  • A Bayesian networks approach for predicting protein-protein interactions from genomic data.
    Science, Vol. 302, No. 5644. (17 October 2003), pp. 449-453.
    by R Jansen, H Yu, D Greenbaum, Y Kluger, NJ Krogan, S Chung, A Emili, M Snyder, JF Greenblatt, M Gerstein
    posted to bayesian data_integration peruse prediction_ppi by phoenixzxl on 2008-03-17 12:28:41 as ** along with 18 people and 2 groups lfriedl balajis opheliav yuval wnpx nickluscombe ruvido raiyar massivemayhem kdang dbgrant nedwards karfunkel Evangelia shung penpen926 carlk frohike kdl EBI-regulation
  • Bayesian learning of biological pathways on genomic data assimilation
    Bioinformatics (25 September 2008), btn483.
    by Ryo Yoshida, Masao Nagasaki, Rui Yamaguchi, Seiya Imoto, Satoru Miyano, Tomoyuki Higuchi
    posted to simulation data_integration bayesian by phoenixzxl on 2008-10-06 03:23:30 as *** along with 2 people rdiaz renatomilani
  • Integrating protein-protein interactions and text mining for protein function prediction
    BMC Bioinformatics, Vol. 9, No. Suppl 8. (2008)
    by Samira Jaeger, Sylvain Gaudan, Ulf Leser, Dietrich R Schuhmann
    posted to data_integration prediction_function by phoenixzxl on 2008-07-28 07:29:25 as ** along with 6 people raiyar farzanehs jiny bootsy reyez jyuh
  • Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Andrew Bordner, Andrey Gorin
    posted to complex data_integration prediction_interface by phoenixzxl on 2008-05-13 07:28:04 as *** along with 4 people chad_davis jyuh neils bicko
  • Dynamic complex formation during the yeast cell cycle.
    Science, Vol. 307, No. 5710. (4 February 2005), pp. 724-727.
    by U de Lichtenberg, LJ Jensen, S Brunak, P Bork
    posted to complex data_integration gene_expression network_dynamic network_ppi peruse by phoenixzxl on 2008-04-08 04:45:53 as ** along with 11 people and 1 group mdimmic chad_davis balajis wnpx koller massivemayhem cjeans arne larsjuhljensen carlk gjuggler dIEMoSIRIS
  • Collective entity resolution in relational data
    ACM Trans. Knowl. Discov. Data, Vol. 1, No. 1. (March 2007)
    by Indrajit Bhattacharya, Lise Getoor
    posted to data_integration by meerkat on 2007-07-30 14:29:14 as ** along with 5 people and 2 groups ldietz lfriedl arjen azygmunt tbachteler kdl AGH-IISG
  • Efficient clustering of high-dimensional data sets with application to reference matching
    (2000), pp. 169-178.
    by Andrew Mccallum, Kamal Nigam, Lyle H Ungar
    posted to data_integration by meerkat on 2007-07-30 14:25:49 as ** along with 5 people and 1 group agulli lfriedl aviad_work gimbiri burtonwu kdl
  • Selective integration of multiple biological data for supervised network inference.
    Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2488-2495.
    by T Kato, K Tsuda, K Asai
    posted to data_integration systems_biology by mbeautru on 2006-08-11 00:20:10 as *** along with 2 people rabbat wnpx
  • YeastHub: a semantic web use case for integrating data in the life sciences domain.
    Bioinformatics, Vol. 21 Suppl 1 (1 June 2005)
    by KH Cheung, KY Yip, A Smith, R Deknikker, A Masiar, M Gerstein
    posted to data_integration semantic_web by mbeautru on 2006-08-11 01:10:59 as *** along with 10 people and 3 groups gorlitsky wcrosbie Schmidtc benny wnpx dullhunk caporaso agileproteomics pablomendes jyuh Wikipedia CoP_CMS biomedical-nlp
  • Data integration: a theoretical perspective
    (2002), pp. 233-246.
    by Maurizio Lenzerini
    posted to data_exchange data_integration transfer by masteraka on 2007-09-30 22:36:54 as **** along with 8 people vtanas andymaule lei brunoDE anonyox fsautomata dansullivanblk fryanpan
  • Data integration under integrity constraints
    Information Systems, Vol. 29, No. 2. (April 2004), pp. 147-163.
    by Andrea Cali, Diego Calvanese, Giuseppe De Giacomo, Maurizio Lenzerini
    posted to databases data_integration reading_list by masteraka on 2007-11-09 23:19:36 as *****
  • Information Integration Using Logical Views
    (1997), pp. 19-40.
    by Jeffrey D Ullman
    posted to databases data_integration by masteraka on 2007-10-16 15:02:39 as ** along with 2 people brunoDE anonyox
  • Impliance: A Next Generation Information Management Appliance
    (22 Dec 2006)
    by Bishwaranjan Bhattacharjee, Vuk Ercegovac, Joseph Glider, Richard Golding, Guy Lohman, Volke Markl, Hamid Pirahesh, Jun Rao, Robert Rees, Frederick Reiss, Eugene Shekita, Garret Swart
    posted to scalability integration ibm heterogeneity database data_integration by jsenn on 2008-09-30 12:33:36 as read
  • Quarrying dataspaces: Schemaless profiling of unfamiliar information sources
    Data Engineering Workshop, 2008. ICDEW 2008. IEEE 24th International Conference on (2008), pp. 270-277.
    by B Howe, D Maier, N Rayner, J Rucker
    posted to profiling data_integration by jsenn on 2008-09-24 14:28:39 as *
  • Structural characterization of components of protein assemblies by comparative modeling and electron cryo-microscopy.
    Journal of structural biology, Vol. 149, No. 2. (February 2005), pp. 191-203.
    by M Topf, ML Baker, B John, W Chiu, A Sali
    posted to algorithm alignment complexes data_integration em modelling proj_assembly structure by chad_davis to the group structural_bioinformatics on 2008-05-28 10:37:06 as **
  • Homology-based modeling of 3D structures of protein-protein complexes using alignments of modified sequence profiles.
    International journal of biological macromolecules (21 May 2008)
    by Petras J J Kundrotas, Marc F F Lensink, Emil Alexov
    posted to algorithm alignment binding complexes data_integration modelling proj_assembly structure by chad_davis to the group structural_bioinformatics on 2008-06-29 11:15:36 as **
  • Analyzing Protein Interaction Networks Using Structural Information
    Annual Review of Biochemistry, Vol. 77, No. 1. (2008)
    by Christina Kiel, Pedro Beltrao, Luis Serrano
    posted to structure review proj_interprets proj_assembly ppi networks embl data_integration by chad_davis to the group structural_bioinformatics on 2008-09-17 16:51:19 as *** along with 8 people Borelli bicko neils Evangelia grahamc paolomarcatili phoenixzxl zwang
  • Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae.
    Nat Genet, Vol. 29, No. 4. (December 2001), pp. 482-486.
    by H Ge, Z Liu, GM Church, M Vidal
    posted to data_integration interactions model_organisms network_biology translation yeast by grahamc on 2008-03-28 19:59:46 as ** along with 10 people and 1 group BioGeek lfriedl wnpx mmt gespim bluto ruvido kintoki roys paolomarcatili kdl
  • iRefIndex: A consolidated protein interaction database with provenance
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Sabry Razick, George Magklaras, Ian Donaldson
    posted to protein-protein interactions data_integration by grahamc on 2008-10-06 20:24:56 as ** along with 2 people barriot neils
  • BNFinder: Exact and efficient method for learning Bayesian networks
    Bioinformatics (30 September 2008), btn505.
    by Bartek Wilczynski, Norbert Dojer
    posted to tools data_integration bioinformatics by grahamc on 2008-10-06 17:23:38 as ** along with 3 people phoenixzxl rdiaz renatomilani
  • Relating whole-genome expression data with protein-protein interactions.
    Genome Res, Vol. 12, No. 1. (January 2002), pp. 37-46.
    by R Jansen, D Greenbaum, M Gerstein
    posted to data_integration expression interactions protein-protein by grahamc on 2008-03-28 20:03:18 as ** along with 8 people gurkanbebek gespim cjeans iris_2001 kintoki paolomarcatili nedwards carlk
  • Computational analysis of human protein interaction networks.
    Proteomics, Vol. 7, No. 15. (August 2007), pp. 2541-2552.
    by F Ramírez, A Schlicker, Y Assenov, T Lengauer, M Albrecht
    posted to data_integration human interactions network_biology protein-protein by grahamc on 2008-03-28 20:45:02 as ** along with 4 people jyuh balicea paolomarcatili carlk
  • PROTEOMICS: Enhanced: Integrating Interactomes
    Science, Vol. 295, No. 5553. (11 January 2002), pp. 284-287.
    by Mark Gerstein, Ning Lan, Ronald Jansen
    posted to data_integration interactions by grahamc on 2008-03-28 20:25:16 as ** along with 2 people and 1 group lfriedl balajis kdl
  • Integrating physical and genetic maps: from genomes to interaction networks
    Nature Reviews Genetics, Vol. 8, No. 9., pp. 699-710.
    by Andreas Beyer, Sourav Bandyopadhyay, Trey Ideker
    posted to data_integration network_biology by grahamc on 2008-03-28 17:09:51 as ** along with 12 people and 3 groups giovenko bpcusack jyuh balicea dchughes sebastien_vigneau joepickrell zwang shikin lh1 cdeane carlk Bioinformatics G4ID Genetics-of-Gambling
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