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所有的文献@标签 ctcf [56 articles]

当前文献的标签分类为: ctcf.
  • Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome.
    Cell, Vol. 128, No. 6. (23 March 2007), pp. 1231-1245.
    by TH Kim, ZK Abdullaev, AD Smith, KA Ching, DI Loukinov, RD Green, MQ Zhang, VV Lobanenkov, B Ren
    posted to ctcf genomics insulator by xingxu on 2008-05-15 17:33:00 as ** along with 2 people sebastien_vigneau rschulz
  • The DXPas34 repeat regulates random and imprinted X inactivation.
    Developmental cell, Vol. 12, No. 1. (January 2007), pp. 57-71.
    by DE Cohen, LS Davidow, JA Erwin, N Xu, D Warshawsky, JT Lee
    posted to ctcf dxpas34 inactivation minisatellite repeat x-chromosome by sebastien_vigneau on 2008-05-21 15:30:39 as read
  • The Drosophila insulator proteins CTCF and CP190 link enhancer blocking to body patterning
    The EMBO Journal, Vol. aop, No. current. (06 September 2007)
    by Man Mohan, Marek Bartkuhn, Martin Herold, Angela Philippen, Nina Heinl, Imke Bardenhagen, Joerg Leers, Robert AH White, Renate Renkawitz-Pohl, Harald Saumweber, Rainer Renkawitz
    posted to cp190 development insulator ctcf drosophila by sebastien_vigneau on 2007-10-29 15:02:59 as **
  • Unusual compartmentalization of CTCF and other transcription factors in the course of terminal erythroid differentiation.
    Biochim Biophys Acta, Vol. 1773, No. 6. (June 2007), pp. 924-933.
    by OL Kantidze, OV Iarovaia, ES Philonenko, II Yakutenko, SV Razin
    posted to compartment ctcf erythrocyte nucleolus territory by sebastien_vigneau on 2007-07-25 09:09:59 as **
  • Rasgrf1 imprinting is regulated by a CTCF-dependent methylation-sensitive enhancer blocker.
    Mol Cell Biol, Vol. 25, No. 24. (December 2005), pp. 11184-11190.
    by B Yoon, H Herman, B Hu, YJ Park, A Lindroth, A Bell, AG West, Y Chang, A Stablewski, JC Piel, DI Loukinov, VV Lobanenkov, PD Soloway
    posted to ctcf icr imprinting rasgrf1 by sebastien_vigneau on 2007-08-07 13:53:07 as *****
  • CTCF is conserved from Drosophila to humans and confers enhancer blocking of the Fab-8 insulator
    EMBO Reports, Vol. aop, No. current. (21 January 2005)
    by Hanlim Moon, Galina Filippova, Dmitry Loukinov, Elena Pugacheva, Qi Chen, Sheryl T Smith, Adam Munhall, Britta Grewe, Marek Bartkuhn, Rudiger Arnold, Les J Burke, Renate Renkawitz-Pohl, Rolf Ohlsson, Jumin Zhou, Rainer Renkawitz, Victor Lobanenkov
    posted to ctcf drosophila evolution fab-8 insulator by sebastien_vigneau on 2007-10-29 14:45:55 as **** along with 1 person JeffR100
  • CTCF-dependent chromatin insulator is linked to epigenetic remodeling.
    Mol Cell, Vol. 23, No. 5. (1 September 2006), pp. 733-742.
    by K Ishihara, M Oshimura, M Nakao
    posted to brca1 chd8 c-myc ctcf h19 imprinting insulator remodelling snf2 by sebastien_vigneau on 2007-07-24 12:32:22 as read
  • The Binding Sites for the Chromatin Insulator Protein CTCF Map to DNA Methylation-Free Domains Genome-Wide
    Genome Res., Vol. 14, No. 8. (1 August 2004), pp. 1594-1602.
    by Rituparna Mukhopadhyay, Wenqiang Yu, Joanne Whitehead, Junwang Xu, Magda Lezcano, Svetlana Pack, Chandrasekhar Kanduri, Meena Kanduri, Vasudeva Ginjala, Alexander Vostrov, Wolfgang Quitschke, Igor Chernukhin, Elena Klenova, Victor Lobanenkov, Rolf Ohlsson
    posted to chip-chip ctcf genome-wide insulator mbd2 methylation by sebastien_vigneau on 2007-07-24 13:55:46 as read along with 2 people olympos clearbluespring
  • CTCF Genomic Binding Sites in Drosophila and the Organisation of the Bithorax Complex.
    PLoS Genet, Vol. 3, No. 7. (6 July 2007)
    by Eimear E E Holohan, Camilla Kwong, Boris Adryan, Marek Bartkuhn, Martin Herold, Rainer Renkawitz, Steven Russell, Robert White
    posted to ctcf drosophila evolution fab insulator by sebastien_vigneau on 2007-07-12 09:08:00 as **** along with 1 person maximilianh
  • Statistical significance of cis-regulatory modules
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Dustin Schones, Andrew Smith, Michael Zhang
    posted to bioinformatics ctcf enhancer evolution expression genome-wide by sebastien_vigneau on 2008-04-02 22:48:48 as read along with 9 people and 1 group indigoviolet dpollard dquest shigepong SeungjoonOh GustavoLacerda nklee xili03 sconlan EisenLab
  • Identification, genome mapping, and CTCF binding of potential insulators within the FXYD5-COX7A1 locus of human Chromosome 19q13.12
    Mammalian Genome, Vol. 17, No. 10. (October 2006), pp. 1042-1049.
    by Akopov, Sergey, Ruda, Vera, Batrak, Vera, Vetchinova, Anna, Chernov, Igor, Nikolaev, Lev, Bode, Jurgen, Sverdlov, Eugene
    posted to ctcf insulator by sebastien_vigneau on 2007-10-10 13:15:03 as ****
  • CTCF tethers an insulator to subnuclear sites, suggesting shared insulator mechanisms across species.
    Mol Cell, Vol. 13, No. 2. (30 January 2004), pp. 291-298.
    by TM Yusufzai, H Tagami, Y Nakatani, G Felsenfeld
    posted to ctcf insulator nucleolus nucleophosmin by sebastien_vigneau on 2007-07-25 14:27:47 as read
  • High-resolution profiling of histone methylations in the human genome.
    Cell, Vol. 129, No. 4. (18 May 2007), pp. 823-837.
    by A Barski, S Cuddapah, K Cui, TY Roh, DE Schones, Z Wang, G Wei, I Chepelev, K Zhao
    posted to ctcf genome-wide h2az h2bk5 h3h4 h3k27 h3k79 h3k9 h4k20 histone human methylation polii by sebastien_vigneau on 2007-07-16 10:40:50 as ** along with 8 people and 1 group jyuh kengg jackjackjjj ghattem epigenetics ksha inesdesantiago dquest Plantandetc
  • Cohesins localize with CTCF at the KSHV latency control region and at cellular c-myc and H19/Igf2 insulators
    The EMBO Journal, Vol. aop, No. current. (24 January 2008)
    by William Stedman, Hyojeung Kang, Shu Lin, Joseph L Kissil, Marisa S Bartolomei, Paul M Lieberman
    posted to cohesin ctcf h19 herpesvirus igf2 k14 kaposi kshv lana orf71 orf72 orf73 orf74 rad21 sarcoma smc1 vcyclin vflip vgpcr virus vmirna by sebastien_vigneau on 2008-03-21 14:52:10 as read along with 1 person clearbluespring
  • Imprinting regulation of the murine Meg1/Grb10 and human GRB10 genes; roles of brain-specific promoters and mouse-specific CTCF-binding sites.
    Nucleic Acids Res, Vol. 31, No. 5. (1 March 2003), pp. 1398-1406.
    by T Hikichi, T Kohda, T Kaneko-Ishino, F Ishino
    posted to brain ctcf grb10 icr imprinting by sebastien_vigneau on 2007-08-07 13:18:01 as ***** along with 1 person rschulz
  • A differentially methylated imprinting control region within the Kcnq1 locus harbors a methylation-sensitive chromatin insulator.
    J Biol Chem, Vol. 277, No. 20. (17 May 2002), pp. 18106-18110.
    by C Kanduri, G Fitzpatrick, R Mukhopadhyay, M Kanduri, V Lobanenkov, M Higgins, R Ohlsson
    posted to ctcf icr imprinting kcnq1 by sebastien_vigneau on 2007-08-07 13:26:04 as *****
  • The many roles of the transcriptional regulator CTCF.
    Biochem Cell Biol, Vol. 81, No. 3. (June 2003), pp. 161-167.
    by KL Dunn, JR Davie
    posted to ctcf by sebastien_vigneau on 2007-07-24 11:15:07 as **** along with 1 person JeffR100
  • Identification of a tyrosine-phosphorylated CCCTC-binding nuclear factor in capacitated mouse spermatozoa
    PROTEOMICS, Vol. 6, No. 17. (2006), pp. 4800-4807.
    by Jyh-Bing Tang, Yee-Hsiung Chen
    posted to ccctc ctcf sperm testis by sebastien_vigneau on 2008-04-16 21:44:21 as read
  • Chromatin fine structure of the c-MYC insulator element/DNase I-hypersensitive site I is not preserved during mitosis.
    Proc Natl Acad Sci U S A, Vol. 104, No. 40. (2 October 2007), pp. 15741-15746.
    by J Komura, H Ikehata, T Ono
    posted to chromatin cmyc ctcf hs by sebastien_vigneau on 2008-01-17 20:35:10 as ****
  • Poly(ADP-ribosyl)ation and epigenetics. Is CTCF PARt of the plot?
    Cell Cycle, Vol. 4, No. 1. (January 2005), pp. 96-101.
    by E Klenova, R Ohlsson
    posted to ctcf par ribosylation by sebastien_vigneau on 2007-07-24 12:10:44 as read
  • The H19 gene: regulation and function of a non-coding RNA.
    Cytogenetic and genome research, Vol. 113, No. 1-4. (2006), pp. 188-193.
    by A Gabory, MA Ripoche, T Yoshimizu, L Dandolo
    posted to ctcf dmd dmr h19 icr igf2 imprinting review by sebastien_vigneau on 2008-06-28 00:38:48 as read
  • Poly(ADP-ribosyl)ation regulates CTCF-dependent chromatin insulation
    Nat Genet, Vol. 36, No. 10. (October 2004), pp. 1105-1110.
    by Wenqiang Yu, Vasudeva Ginjala, Vinod Pant, Igor Chernukhin, Joanne Whitehead, France Docquier, Dawn Farrar, Gholamreza Tavoosidana, Rituparna Mukhopadhyay, Chandrasekhar Kanduri, Mitsuo Oshimura, Andrew P Feinberg, Victor Lobanenkov, Elena Klenova, Rolf Ohlsson
    posted to ctcf ribosylation by sebastien_vigneau on 2007-10-10 13:15:35 as read along with 1 person olympos
  • The nucleotides responsible for the direct physical contact between the chromatin insulator protein CTCF and the H19 imprinting control region manifest parent of origin-specific long-distance insulation and methylation-free domains
    Genes Dev., Vol. 17, No. 5. (1 March 2003), pp. 586-590.
    by Vinod Pant, Piero Mariano, Chandrasekhar Kanduri, Anita Mattsson, Victor Lobanenkov, Rainer Heuchel, Rolf Ohlsson
    posted to boris ctcf h19 nuclear-localization pairing by sebastien_vigneau on 2008-04-16 20:48:02 as read along with 1 person olympos
  • CTCF is a uniquely versatile transcription regulator linked to epigenetics and disease
    Trends in Genetics, Vol. 17, No. 9. (1 September 2001), pp. 520-527.
    by Rolf Ohlsson, Rainer Renkawitz, Victor Lobanenkov
    posted to ctcf disease epigenetics by sebastien_vigneau on 2007-08-07 14:21:56 as *****
  • The novel BORIS + CTCF gene family is uniquely involved in the epigenetics of normal biology and cancer.
    Semin Cancer Biol, Vol. 12, No. 5. (October 2002), pp. 399-414.
    by EM Klenova, HC Morse, R Ohlsson, VV Lobanenkov
    posted to boris cancer ctcf by sebastien_vigneau on 2007-09-03 22:19:05 as read
  • Epigenetic mark sequence of the H19 gene in human sperm
    Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression, Vol. 1518, No. 1-2. (19 March 2001), pp. 137-144.
    by Toshio Hamatani, Hiroyuki Sasaki, Ko Ishihara, Naoko Hida, Tetsuo Maruyama, Yasunori Yoshimura, Jun-Ichi Hata, Akihiro Umezawa
    posted to ctcf dmd dmr h19 human icr imprinting sperm by sebastien_vigneau on 2008-06-28 00:28:26 as read
  • CTCF Interacts with and Recruits the Largest Subunit of RNA Polymerase II to CTCF Target Sites Genome-Wide
    Mol. Cell. Biol., Vol. 27, No. 5. (1 March 2007), pp. 1631-1648.
    by Igor Chernukhin, Shaharum Shamsuddin, Sung Y Kang, Rosita Bergstrom, Yoo-Wook Kwon, Wenqiang Yu, Joanne Whitehead, Rituparna Mukhopadhyay, France Docquier, Dawn Farrar, Ian Morrison, Marc Vigneron, Shwu-Yuan Wu, Cheng-Ming Chiang, Dmitri Loukinov, Victor Lobanenkov, Rolf Ohlsson, Elena Klenova
    posted to chip-chip ctcf polii by sebastien_vigneau on 2008-01-17 16:51:25 as **** along with 2 people and 1 group kengg clearbluespring Plantandetc
  • Epigenetic boundaries of tumour suppressor gene promoters: the CTCF connection and its role in carcinogenesis.
    J Cell Mol Med, Vol. 10, No. 3. (p 2006), pp. 554-568.
    by F Recillas-Targa, IA De La Rosa-Velázquez, E Soto-Reyes, L Benítez-Bribiesca
    posted to cancer ctcf by sebastien_vigneau on 2007-09-03 22:16:38 as read along with 1 person JeffR100
  • Drosophila CTCF Is Required for Fab-8 Enhancer Blocking Activity in S2 Cells.
    J Mol Biol, Vol. 373, No. 2. (19 October 2007), pp. 233-239.
    by D Ciavatta, S Rogers, T Magnuson
    posted to ctcf drosophila fab-8 insulator by sebastien_vigneau on 2007-10-29 15:05:26 as **
  • Genomic imprinting: CTCF protects the boundaries.
    Current biology : CB, Vol. 14, No. 7. (6 April 2004)
    by A Lewis, A Murrell
    posted to ctcf h19 icr imprinting by sebastien_vigneau on 2008-06-28 00:48:45 as read
  • BORIS, a novel male germ-line-specific protein associated with epigenetic reprogramming events, shares the same 11-zinc-finger domain with CTCF, the insulator protein involved in reading imprinting marks in the soma.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 10. (14 May 2002), pp. 6806-6811.
    by DI Loukinov, E Pugacheva, S Vatolin, SD Pack, H Moon, I Chernukhin, P Mannan, E Larsson, C Kanduri, AA Vostrov, H Cui, EL Niemitz, JE Rasko, FM Docquier, M Kistler, JJ Breen, Z Zhuang, WW Quitschke, R Renkawitz, EM Klenova, AP Feinberg, R Ohlsson, HC Morse, VV Lobanenkov
    posted to boris ctcf imprinting by sebastien_vigneau on 2008-04-16 20:14:38 as read
  • Genetics and Epigenetics of the Multifunctional Protein CTCF.
    Curr Top Dev Biol, Vol. 80 (2007), pp. 337-360.
    by GN Filippova
    posted to ctcf epigenetics review by sebastien_vigneau on 2008-05-30 19:58:37 as read along with 2 people jyuh idonaldson
  • Cohesin mediates transcriptional insulation by CCCTC-binding factor
    Nature (30 January 2008)
    by Kerstin S Wendt, Keisuke Yoshida, Takehiko Itoh, Masashige Bando, Birgit Koch, Erika Schirghuber, Shuichi Tsutsumi, Genta Nagae, Ko Ishihara, Tsuyoshi Mishiro, Kazuhide Yahata, Fumio Imamoto, Hiroyuki Aburatani, Mitsuyoshi Nakao, Naoko Imamoto, Kazuhiro Maeshima, Katsuhiko Shirahige, Jan-Michael Peters
    posted to cohesin ctcf h19 igf2 by sebastien_vigneau on 2008-03-21 14:43:48 as read along with 3 people jackjackjjj rschulz clearbluespring
  • Maternal depletion of CTCF reveals multiple functions during oocyte and preimplantation embryo development.
    Development (Cambridge, England) (9 July 2008)
    by Le-Ben B Wan, Hua Pan, Sridhar Hannenhalli, Yong Cheng, Jun Ma, Andrew Fedoriw, Victor Lobanenkov, Keith E E Latham, Richard M M Schultz, Marisa S S Bartolomei
    posted to ctcf imprinting oocyte zygote by sebastien_vigneau on 2008-07-14 13:13:51 as read
  • Expression of the CTCF-paralogous cancer-testis gene, brother of the regulator of imprinted sites (BORIS), is regulated by three alternative promoters modulated by CpG methylation and by CTCF and p53 transcription factors.
    Nucleic acids research, Vol. 35, No. 21. (2007), pp. 7372-7388.
    by S Renaud, EM Pugacheva, MD Delgado, R Braunschweig, Z Abdullaev, D Loukinov, J Benhattar, V Lobanenkov
    posted to boris cpg ctcf methylation p53 by sebastien_vigneau on 2008-04-16 20:42:10 as read
  • Dynamic association of the mammalian insulator protein CTCF with centrosomes and the midbody.
    Exp Cell Res, Vol. 294, No. 1. (10 March 2004), pp. 86-93.
    by R Zhang, LJ Burke, JE Rasko, V Lobanenkov, R Renkawitz
    posted to centrosome ctcf localization nucleolus by sebastien_vigneau on 2007-10-19 18:56:48 as read
  • Evidence that homologous X-chromosome pairing requires transcription and Ctcf protein.
    Nat Genet (21 October 2007)
    by Na Xu, Mary E E Donohoe, Susana S S Silva, Jeannie T T Lee
    posted to ctcf dxpas34 inactivation tsix x-chromosome xite yy1 by sebastien_vigneau on 2007-10-28 10:02:51 as read along with 2 people rschulz clearbluespring
  • Raising the curtains on interchromosomal interactions.
    Trends Genet, Vol. 22, No. 12. (December 2006), pp. 637-639.
    by C Krueger, CS Osborne
    posted to ctcf interaction network by sebastien_vigneau on 2007-07-24 12:15:18 as *****
  • Large scale mapping of methylcytosines in CTCF-binding sites in the human H19 promoter and aberrant hypomethylation in human bladder cancer
    Hum. Mol. Genet., Vol. 10, No. 23. (1 November 2001), pp. 2619-2626.
    by Daiya Takai, Felicidad A Gonzales, Yvonne C Tsai, Mathew J Thayer, Peter A Jones
    posted to ctcf dmd dmr h19 human icr imprinting by sebastien_vigneau on 2008-06-28 00:21:20 as read
  • Cohesins Functionally Associate with CTCF on Mammalian Chromosome Arms.
    Cell (29 January 2008)
    by Vania Parelho, Suzana Hadjur, Mikhail Spivakov, Marion Leleu, Stephan Sauer, Heather C C Gregson, Adam Jarmuz, Claudia Canzonetta, Zoe Webster, Tatyana Nesterova, Bradley S S Cobb, Kyoko Yokomori, Niall Dillon, Luis Aragon, Amanda G G Fisher, Matthias Merkenschlager
    posted to cohesin ctcf by sebastien_vigneau on 2008-03-21 14:39:55 as read along with 2 people jackjackjjj rschulz
  • Characterization of the chicken CTCF genomic locus, and initial study of the cell cycle-regulated promoter of the gene.
    The Journal of biological chemistry, Vol. 273, No. 41. (9 October 1998), pp. 26571-26579.
    by EM Klenova, S Fagerlie, GN Filippova, L Kretzner, GH Goodwin, G Loring, PE Neiman, VV Lobanenkov
    posted to chicken ctcf by sebastien_vigneau on 2008-04-16 19:59:06 as read
  • CTCF physically links cohesin to chromatin.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 24. (17 June 2008), pp. 8309-8314.
    by ED Rubio, DJ Reiss, PL Welcsh, CM Disteche, GN Filippova, NS Baliga, R Aebersold, JA Ranish, A Krumm
    posted to centromere cohesin ctcf by sebastien_vigneau on 2008-07-18 18:26:36 as read along with 1 person inesdesantiago
  • CTCF regulates asynchronous replication of the imprinted H19/Igf2 domain.
    Cell Cycle, Vol. 6, No. 4. (1 February 2007), pp. 450-454.
    by R Bergström, J Whitehead, S Kurukuti, R Ohlsson
    posted to ctcf h19 igf2 replication by sebastien_vigneau on 2007-07-24 12:21:42 as read
  • Cohesin and CTCF: cooperating to control chromosome conformation?
    BioEssays : news and reviews in molecular, cellular and developmental biology, Vol. 30, No. 8. (August 2008), pp. 715-718.
    by M Gause, CA Schaaf, D Dorsett
    posted to cohesin ctcf review by sebastien_vigneau on 2008-07-19 15:00:14 as read
  • We gather together: insulators and genome organization.
    Curr Opin Genet Dev (1 October 2007)
    by Julie A A Wallace, Gary Felsenfeld
    posted to ctcf h19 igf2 insulator localization nucleus by sebastien_vigneau on 2007-10-29 15:08:34 as read along with 3 people and 1 group dpollard dchughes maximilianh EisenLab
  • CTCF binding and higher order chromatin structure of the H19 locus are maintained in mitotic chromatin
    The EMBO Journal, Vol. aop, No. current. (18 August 2005)
    by Les J Burke, Ru Zhang, Marek Bartkuhn, Vijay K Tiwari, Gholamreza Tavoosidana, Sreenivasulu Kurukuti, Christine Weth, Joerg Leers, Niels Galjart, Rolf Ohlsson, Rainer Renkawitz
    posted to ctcf h19 mitosis by sebastien_vigneau on 2008-08-01 18:09:35 as read
  • Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
    Nature (07 May 2008)
    by Lars Guelen, Ludo Pagie, Emilie Brasset, Wouter Meuleman, Marius B Faza, Wendy Talhout, Bert H Eussen, Annelies de Klein, Lodewyk Wessels, Wouter de Laat, Bas van Steensel
    posted to attachment cgi chromosome ctcf expression lamina nucleus organization by rschulz on 2008-05-12 14:16:23 as ** along with 1 person vega
  • Linking Cohesin to Gene Regulation
    Cell, Vol. 132, No. 6. (21 March 2008), pp. 925-928.
    by Daniel Peric-Hupkes, Bas van Steensel
    posted to cohesin ctcf interference mechanism review termination transcription by rschulz on 2008-03-24 13:38:03 as ** along with 1 person maralena
  • Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites.
    Proc Natl Acad Sci U S A, Vol. 104, No. 17. (24 April 2007), pp. 7145-7150.
    by X Xie, TS Mikkelsen, A Gnirke, K Lindblad-Toh, M Kellis, ES Lander
    posted to binding comparative ctcf evolution genome-wide human motif by rschulz on 2008-02-26 09:08:54 as ** along with 4 people aprasad xwbcn olympos bpcusack
  • Two distinct mechanisms of silencing by the KvDMR1 imprinting control region
    The EMBO Journal, Vol. aop, No. current. (13 December 2007)
    by Jong-Yeon Shin, Galina V Fitzpatrick, Michael J Higgins
    posted to antisense ctcf dmr epigenetics imprinting kcnq mechanism rna by rschulz on 2007-12-17 10:38:22 as **
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