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所有的文献@标签 coexpression [49 articles]

当前文献的标签分类为: coexpression.
  • Local coexpression domains of two to four genes in the genome of Arabidopsis.
    Plant Physiol, Vol. 138, No. 2. (June 2005), pp. 923-934.
    by XY Ren, MW Fiers, WJ Stiekema, JP Nap
    posted to arabidopsis coexpression by plofje on 2006-11-01 12:58:26 as **
  • A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules
    Science, Vol. 302, No. 5643. (10 October 2003), pp. 249-255.
    by Joshua M Stuart, Eran Segal, Daphne Koller, Stuart K Kim
    posted to coexpression expression networks by lp2 on 2008-04-07 11:21:37 as ** along with 13 people and 5 groups dragonrez textoris lfriedl balajis nuke2005 maryee tardigrade opheliav wnpx neveaire macle raylim karfunkel kdl Biostatistics Computational-Genomics Bioinformatics Neuroscience
  • Network neighborhood analysis with the multi-node topological overlap measure.
    Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. 222-231.
    by A Li, S Horvath
    posted to bioinformatics coexpression network by kengg on 2008-01-16 21:53:05 as ** along with 1 person and 1 group jeremymiller GeschwindLab
  • Conservation and evolution of gene coexpression networks in human and chimpanzee brains
    PNAS, Vol. 103, No. 47. (21 November 2006), pp. 17973-17978.
    by Michael C Oldham, Steve Horvath, Daniel H Geschwind
    posted to bioinformatics coexpression network by kengg on 2008-01-16 21:51:21 as ** along with 6 people and 2 groups balicea adepace EsepBib jeremymiller cckan nosada17 EisenLab GeschwindLab
  • Genome-wide expression profiling of the Arabidopsis female gametophyte identifies families of small, secreted proteins.
    PLoS Genet, Vol. 3, No. 10. (October 2007), pp. 1848-1861.
    by MW Jones-Rhoades, JO Borevitz, D Preuss
    posted to bioinformatics coexpression meiosis network by kengg on 2008-03-08 04:20:15 as **
  • Coexpression of Neighboring Genes in the Genome of Arabidopsis thaliana
    Genome Res., Vol. 14, No. 6. (1 June 2004), pp. 1060-1067.
    by Elizabeth J Williams, Dianna J Bowles
    posted to arabidopsis bioinformatics coexpression by kengg on 2008-03-12 17:19:33 as ** along with 2 people JeffR100 olympos
  • Annotating Genes of Known and Unknown Function by Large-Scale Coexpression Analysis
    Plant Physiol., Vol. 147, No. 1. (1 May 2008), pp. 41-57.
    by Kevin Horan, Charles Jang, Julia Bailey-Serres, Ron Mittler, Christian Shelton, Jeff F Harper, Jian-Kang Zhu, John C Cushman, Martin Gollery, Thomas Girke
    posted to coexpression bioinformatics by kengg on 2008-04-29 02:36:36 as ** along with 1 person jyuh
  • Computing topological parameters of biological networks.
    Bioinformatics (15 November 2007)
    by Yassen Assenov, Fidel Ramírez, Sven-Eric E Schelhorn, Thomas Lengauer, Mario Albrecht
    posted to bioinformatics coexpression by kengg on 2008-02-03 03:33:15 as ** along with 5 people frohike jyuh jfr grahamc mclarenv
  • Coexpression, coregulation, and cofunctionality of neighboring genes in eukaryotic genomes.
    Genomics, Vol. 91, No. 3. (March 2008), pp. 243-248.
    by P Michalak
    posted to arabidopsis coexpression review by kengg on 2008-03-13 14:17:19 as **
  • Large-scale Cis-element Detection by Analysis of Correlated Expression and Sequence Conservation between Arabidopsis and Brassica oleracea.
    Plant Physiol (6 October 2006)
    by Georg Haberer, Michael T T Mader, Peter Kosarev, Manuel Spannagl, Li Yang, Klaus Fx F Mayer
    posted to bioinformatics brassica coexpression by kengg on 2008-03-12 17:39:49 as ** along with 4 people and 1 group dpollard xwbcn nklee xili03 EisenLab
  • Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks.
    Nature genetics (15 June 2008)
    by Jun Zhu, Bin Zhang, Erin N N Smith, Becky Drees, Rachel B B Brem, Leonid Kruglyak, Roger E E Bumgarner, Eric E E Schadt
    posted to yeast tfs systems network coexpression by kengg on 2008-06-19 21:54:39 as ** along with 8 people djkt marck roys jyuh realzhang tmmurali ptrobajo maralena
  • Understanding Network Concepts in Modules
    BMC Systems Biology, Vol. 1, No. 1. (2007)
    by Jun Dong, Steve Horvath
    posted to bioinformatics coexpression network by kengg on 2008-01-17 21:30:09 as ** along with 3 people and 1 group jfr grahamc natstreet Bioinformatics
  • Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Yuji Zhang, Jianhua Xuan, Benildo, Robert Clarke, Habtom Ressom
    posted to tfs network coexpression bioinformatics by kengg on 2008-04-24 01:35:28 as ** along with 4 people bertelsen bootsy dquest robertvandenberg
  • Systems biology: Merging data means more powerful networks
    Nat Rev Genet, Vol. 9, No. 7. (July 2008), pp. 501-501.
    by Patrick Goymer
    posted to systems review network coexpression by kengg on 2008-06-19 21:51:05 as ** along with 3 people marck renatomilani reyez
  • Hierarchical structure and the prediction of missing links in networks
    Nature, Vol. 453, No. 7191., pp. 98-101.
    by Aaron Clauset, Cristopher Moore, MEJ Newman
    posted to network coexpression bioinformatics by kengg on 2008-05-30 16:02:56 as ** along with 35 people sen_cheng jjray rds Borelli ptrobajo apwesolowski dpf cmmorel fbaroni balicea cmor pbull jago Ema gtgt15 hryk nedwards i-stevenson pinney elsantosneto markusd eyliu craigwilson06 jyuh margaritis gagliol bryanhughes akshat tmmurali cactus AbnerCYH tny briordan deanmalmgren soramame_0518
  • Topological and functional discovery in a gene coexpression meta-network of gastric cancer.
    Cancer Res, Vol. 66, No. 1. (1 January 2006), pp. 232-241.
    by A Aggarwal, DL Guo, Y Hoshida, ST Yuen, KM Chu, S So, A Boussioutas, X Chen, D Bowtell, H Aburatani, SY Leung, P Tan
    posted to bioinformatics coexpression systems by kengg on 2008-02-03 03:21:47 as ** along with 1 person jfr
  • Gene connectivity, function, and sequence conservation: predictions from modular yeast co-expression networks.
    BMC Genomics, Vol. 7 (2006)
    by MR Carlson, B Zhang, Z Fang, PS Mischel, S Horvath, SF Nelson
    posted to coexpression bioinformatics by kengg on 2008-05-24 03:19:51 as ** along with 2 people and 1 group xwbcn jeremymiller GeschwindLab
  • Gene co-expression network topology provides a framework for molecular characterization of cellular state
    Bioinformatics, Vol. 20, No. 14. (22 September 2004), pp. 2242-2250.
    by Scott L Carter, Christian M Brechbuhler, Michael Griffin, Andrew T Bond
    posted to coexpression bioinformatics by kengg on 2008-05-24 03:18:32 as **
  • Identification of a flavonol 7-O-rhamnosyltransferase gene determining flavonoid pattern in Arabidopsis by transcriptome coexpression analysis and reverse genetics.
    J Biol Chem, Vol. 282, No. 20. (18 May 2007), pp. 14932-14941.
    by K Yonekura-Sakakibara, T Tohge, R Niida, K Saito
    posted to coexpression metabolite by kengg on 2008-03-12 18:01:16 as **
  • Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut library for R
    Bioinformatics (16 November 2007), btm563.
    by Peter Langfelder, Bin Zhang, Steve Horvath
    posted to bioinformatics coexpression network by kengg on 2008-01-16 22:12:33 as **
  • A predicted interactome for Arabidopsis.
    Plant Physiol, Vol. 145, No. 2. (October 2007), pp. 317-329.
    by J Geisler-Lee, N O'Toole, R Ammar, NJ Provart, AH Millar, M Geisler
    posted to coexpression high-throughput interaction by kengg on 2008-03-12 20:28:24 as **
  • Network-based classification of breast cancer metastasis
    Mol Syst Biol, Vol. 3 (16 October 2007)
    by Han-Yu Chuang, Eunjung Lee, Yu-Tsueng Liu, Doheon Lee, Trey Ideker
    posted to bioinformatics coexpression network systems by kengg on 2008-02-03 02:58:04 as ** along with 12 people and 2 groups jfr frohike mikaelhuss cjeans zwang cerami abhattac shikin oelemento roys ptrobajo dap5087 Bioinformatics GeneGo
  • Identification of genes required for cellulose synthesis by regression analysis of public microarray data sets.
    Proc Natl Acad Sci U S A, Vol. 102, No. 24. (14 June 2005), pp. 8633-8638.
    by S Persson, H Wei, J Milne, GP Page, CR Somerville
    posted to coexpression microarray network by kengg on 2007-11-20 03:11:05 as ** along with 1 person talponer
  • A general framework for weighted gene co-expression network analysis.
    Stat Appl Genet Mol Biol, Vol. 4, No. 1. (2005)
    by B Zhang, S Horvath
    posted to bioinformatics coexpression network by kengg on 2008-01-16 21:53:52 as ** along with 2 people and 1 group jeremymiller natstreet GeschwindLab
  • Integrating Genetic and Network Analysis to Characterize Genes Related to Mouse Weight.
    PLoS Genet, Vol. 2, No. 8. (18 August 2006)
    by Anatole Ghazalpour, Sudheer Doss, Bin Zhang, Susanna Wang, Christopher Plaisier, Ruth Castellanos, Alec Brozell, Eric E E Schadt, Thomas A A Drake, Aldons J J Lusis, Steve Horvath
    posted to bioinformatics coexpression network by kengg on 2008-01-16 21:53:34 as ** along with 6 people and 1 group Maelys koller giovanni jeremymiller natstreet jo_davies GeschwindLab
  • Extraction of correlated gene clusters from multiple genomic data by generalized kernel canonical correlation analysis.
    Bioinformatics, Vol. 19 Suppl 1 (2003)
    by Y Yamanishi, JP Vert, A Nakaya, M Kanehisa
    posted to bioinformatics coexpression network by kengg on 2008-04-17 15:51:29 as ** along with 1 person bioinfo
  • Coexpression analysis of human genes across many microarray data sets.
    Genome Res, Vol. 14, No. 6. (June 2004), pp. 1085-1094.
    by HK Lee, AK Hsu, J Sajdak, J Qin, P Pavlidis
    posted to coexpression metastudy by jeremymiller on 2006-11-13 21:48:46 as read along with 11 people and 2 groups nedwards jo_davies maryee gpalidwor giovanni hawkeyehammer grahamc macavity1g raylim sgoetz wilbur GeschwindLab Indigene
  • Data mining of gene expression changes in Alzheimer brain.
    Artif Intell Med, Vol. 31, No. 2. (June 2004), pp. 137-154.
    by PR Walker, B Smith, QY Liu, AF Famili, JJ Valdés, Z Liu, B Lach
    posted to coexpression metastudy microarray by jeremymiller on 2006-11-14 00:45:58 as ** along with 1 group GeschwindLab
  • Lethality and centrality in protein networks
    Nature, Vol. 411, No. 6833. (3 May 2001), pp. 41-42.
    by H Jeong, SP Mason, AL Barabasi, ZN Oltvai
    posted to coexpression protein yeast by jeremymiller on 2006-11-13 22:08:10 as read along with 11 people and 3 groups iris_2001 kuhn cmmorel nickluscombe gurkanbebek timflutre ruvido gcalda grahamc lpfernandes Evangelia EBI-regulation GeschwindLab ParkinsonLab_at_MaRS
  • Gene expression profiling of gliomas strongly predicts survival.
    Cancer Res, Vol. 64, No. 18. (15 September 2004), pp. 6503-6510.
    by WA Freije, FE Castro-Vargas, Z Fang, S Horvath, T Cloughesy, LM Liau, PS Mischel, SF Nelson
    posted to brain_cancer cancer coexpression gliomas microarray wgcna by jeremymiller on 2006-11-14 00:36:16 as ** along with 1 person and 1 group srp33 GeschwindLab
  • Analysis of oncogenic signaling networks in glioblastoma identifies ASPM as a molecular target.
    Proc Natl Acad Sci U S A (7 November 2006)
    by S Horvath, B Zhang, M Carlson, K V V Lu, S Zhu, R M M Felciano, M F F Laurance, W Zhao, S Qi, Z Chen, Y Lee, A C C Scheck, L M M Liau, H Wu, D H H Geschwind, P G G Febbo, H I I Kornblum, T F F Cloughesy, S F F Nelson, P S S Mischel
    posted to coexpression glioblastoma microarray wgcna by jeremymiller on 2006-11-13 22:07:25 as ** along with 1 person and 1 group giovanni GeschwindLab
  • Network biology: understanding the cell's functional organization.
    Nat Rev Genet, Vol. 5, No. 2. (February 2004), pp. 101-113.
    by AL Barabási, ZN Oltvai
    posted to coexpression by jeremymiller on 2006-11-14 00:30:11 as read along with 33 people and 11 groups camster snuppepuppan dbk greg jyuh LeightonP hununu felciano mague kuhn textoris rhem1224 lfriedl balajis alexg wnpx jknabe adepace nickluscombe bundschu awooga jdiggans uprock timflutre mikaelhuss gcalda grahamc fishtank jayster4 naegele Evangelia heliopais shikin streptomyces spliceml dbk-lab kdl EisenLab TCR_Signaling EBI-regulation SysbioMPI-TCells GeschwindLab generif_paper GeneGo
  • Behavioral changes in transgenic mice expressing both amyloid precursor protein and presenilin-1 mutations: lack of association with amyloid deposits.
    Behav Genet, Vol. 29, No. 3. (May 1999), pp. 177-185.
    by LA Holcomb, MN Gordon, P Jantzen, K Hsiao, K Duff, D Morgan
    posted to alzheimers behaviour coexpression disease immunohistochemistry maze model mouse transgenic by jclau on 2007-03-18 17:28:01 as ****
  • Accelerated amyloid deposition in the brains of transgenic mice coexpressing mutant presenilin 1 and amyloid precursor proteins.
    Neuron, Vol. 19, No. 4. (October 1997), pp. 939-945.
    by DR Borchelt, T Ratovitski, J van Lare, MK Lee, V Gonzales, NA Jenkins, NG Copeland, DL Price, SS Sisodia
    posted to alzheimers coexpression disease model mouse transgenic by jclau on 2007-03-18 17:16:04 as ****
  • Genome-wide atlas of gene expression in the adult mouse brain
    Nature
    by Ed S Lein, Michael J Hawrylycz, Nancy Ao, Mikael Ayres, Amy Bensinger, Amy Bernard, Andrew F Boe, Mark S Boguski, Kevin S Brockway, Emi J Byrnes, Lin Chen, Li Chen, Tsuey-Ming Chen, Mei C Chin, Jimmy Chong, Brian E Crook, Aneta Czaplinska, Chinh N Dang, Suvro Datta, Nick R Dee, Aimee L Desaki, Tsega Desta, Ellen Diep, Tim A Dolbeare, Matthew J Donelan, Hong-Wei Dong, Jennifer G Dougherty, Ben J Duncan, Amanda J Ebbert, Gregor Eichele, Lili K Estin, Casey Faber, Benjamin A Facer, Rick Fields, Shanna R Fischer, Tim P Fliss, Cliff Frensley, Sabrina N Gates, Katie J Glattfelder, Kevin R Halverson, Matthew R Hart, John G Hohmann, Maureen P Howell, Darren P Jeung, Rebecca A Johnson, Patrick T Karr, Reena Kawal, Jolene M Kidney, Rachel H Knapik, Chihchau L Kuan, James H Lake, Annabel R Laramee, Kirk D Larsen, Christopher Lau, Tracy A Lemon, Agnes J Liang, Ying Liu, Lon T Luong, Jesse Michaels, Judith J Morgan, Rebecca J Morgan, Marty T Mortrud, Nerick F Mosqueda, Lydia L Ng, Randy Ng, Geralyn J Orta, Caroline C Overly, Tu H Pak, Sheana E Parry, Sayan D Pathak, Owen C Pearson, Ralph B Puchalski, Zackery L Riley, Hannah R Rockett, Stephen A Rowland, Joshua J Royall, Marcos J Ruiz, Nadia R Sarno, Katherine Schaffnit, Nadiya V Shapovalova, Taz Sivisay, Clifford R Slaughterbeck, Simon C Smith, Kimberly A Smith, Bryan I Smith, Andy J Sodt, Nick N Stewart, Kenda-Ruth Stumpf, Susan M Sunkin, Madhavi Sutram, Angelene Tam, Carey D Teemer, Christina Thaller, Carol L Thompson, Lee R Varnam, Axel Visel, Ray M Whitlock, Paul E Wohnoutka, Crissa K Wolkey, Victoria Y Wong, Matthew Wood, Murat B Yaylaoglu, Rob C Young, Brian L Youngstrom, Xu F Yuan, Bin Zhang, Theresa A Zwingman, Allan R Jones
    posted to mouse expression coexpression brain by JBEgwa01 on 2007-01-16 23:31:34 as ** along with 14 people and 4 groups jonsta247 provero jeremymiller jfr dchughes adepace jclau mgaldzic nm cjeans N0131826 cmor rschulz dlmace EisenLab G4ID CHIP Genetics-of-Gambling
  • Rapid and asymmetric divergence of duplicate genes in the human gene coexpression network.
    BMC Bioinformatics, Vol. 7 (2006)
    by WY Chung, R Albert, I Albert, A Nekrutenko, KD Makova
    posted to coexpression duplication evolution expression gene by dpollard to the group EisenLab on 2006-03-21 19:16:21 as ** along with 1 person gpalidwor
  • Pathway and gene-set activation measurement from mRNA expression data: the tissue distribution of human pathways
    Genome Biology, Vol. 7 (17 October 2006), R93.
    by David M Levine, David R Haynor, John Castle, Sergey Stepaniants, Matteo Pellegrini, Mao Mao, Jason M Johnson
    posted to pathway mrna microarray gene_set_analysis gene_list_analysis expression comparison coherence coexpression by ealloza to the group BioinfoCIPF on 2007-06-04 11:07:04 as *** along with 3 people dragonrez jfr heliopais
  • Study of coordinative gene expression at the biological process level
    Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3651-3657.
    by Tianwei Yu, Wei Sun, Shinsheng Yuan, Ker-Chau Li
    posted to systems_biology microarray functional_annotation expression coexpression algorithm by ealloza to the group BioinfoCIPF on 2006-08-21 13:49:30 as read
  • Human promoter genomic composition demonstrates non-random groupings that reflect general cellular function
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by Markey Mcnutt, Ron Tongbai, Wenwu Cui, Irene Collins, Wendy Freebern, Idalia Montano, Cynthia Haggerty, GVR Chandramouli, Kevin Gardner
    posted to coexpression by gpalidwor on 2006-11-27 21:05:07 as **
  • Rates of divergence in gene expression profiles of primates, mice, and flies: stabilizing selection and variability among functional categories.
    Evolution Int J Org Evolution, Vol. 59, No. 1. (January 2005), pp. 126-137.
    by B Lemos, CD Meiklejohn, M Cáceres, DL Hartl
    posted to coevolution coexpression evolution expression go by Garamonfok on 2007-12-11 10:48:34 as ****
  • Clusters of Co-expressed Genes in Mammalian Genomes Are Conserved by Natural Selection
    Molecular Biology and Evolution, Vol. 22, No. 3. (March 2005), pp. 767-775.
    by Gregory AC Singer, Andrew T Lloyd, Lukasz B Huminiecki, Kenneth H Wolfe
    posted to coevolution coexpression evolution expression genome promotors by Garamonfok on 2007-11-09 17:17:18 as ***** along with 1 person JeffR100
  • Evolution of Proteins and Gene Expression Levels are Coupled in Drosophila and are Independently Associated with mRNA Abundance, Protein Length, and Number of Protein-Protein Interactions
    Molecular Biology and Evolution, Vol. 22, No. 5. (15 May 2005), pp. 1345-1354.
    by Bernardo Lemos, Brian R Bettencourt, Colin D Meiklejohn, Daniel L Hartl
    posted to coevolution coexpression evolution genome interaction proteinlength by Garamonfok on 2007-12-11 10:38:41 as read along with 2 people and 1 group skumagai penka Nie
  • Conservation and coevolution in the scale-free human gene coexpression network.
    Mol Biol Evol, Vol. 21, No. 11. (November 2004), pp. 2058-2070.
    by IK Jordan, L Mariño-Ramírez, YI Wolf, EV Koonin
    posted to coevolution coexpression evolution expression by Garamonfok on 2007-11-28 11:45:24 as read along with 2 people dragonrez bjorns
  • Coevolution of gene expression among interacting proteins.
    Proc Natl Acad Sci U S A, Vol. 101, No. 24. (15 June 2004), pp. 9033-9038.
    by HB Fraser, AE Hirsh, DP Wall, MB Eisen
    posted to coevolution coexpression evolution expression by Garamonfok on 2007-11-28 11:43:34 as read along with 6 people and 2 groups pradiptaray stevanspringer lfriedl dayjm radek cmm kdl FAB-lab
  • Evolutionary Origin and Maintenance of Coexpressed Gene Clusters in Mammals
    Mol Biol Evol, Vol. 23, No. 9. (1 September 2006), pp. 1715-1723.
    by Marie Semon, Laurent Duret
    posted to coevolution coexpression evolution expression by Garamonfok on 2007-11-28 11:42:20 as ***** along with 2 people and 2 groups dchughes JeffR100 G4ID Genetics-of-Gambling
  • notes miRGator: an integrated system for functional annotation of microRNAs.
    Nucleic Acids Res (16 October 2007)
    by Seungyoon Nam, Bumjin Kim, Seokmin Shin, Sanghyuk Lee
    posted to coexpression correlation database expression functional_annotation gene_set_analysis microrna webserver by ealloza on 2007-11-12 12:51:36 as read along with 2 people jfr maralena
  • Computational analysis of biological functions and pathways collectively targeted by co-expressed microRNAs in cancer
    BMC Bioinformatics, Vol. 8, No. Suppl 7. (2007)
    by Yuriy Gusev, Thomas Schmittgen, Megan Lerner, Russell Postier, Daniel Brackett
    posted to cancer coexpression functional_annotation microrna pathway by ealloza on 2007-12-13 17:58:22 as read along with 5 people jfr eckart_bindewald vinithepooh yugusev maralena
  • Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes.
    RNA, Vol. 11, No. 3. (March 2005), pp. 241-247.
    by S Baskerville, DP Bartel
    posted to block coexpression expression microarray microrna by ealloza on 2007-11-26 12:53:09 as read along with 4 people and 1 group jfr mtagaya lp2 heliopais microRNA
  • Global similarity and local divergence in human and mouse gene co-expression networks
    BMC Evolutionary Biology, Vol. 6 (12 September 2006), 70.
    by Panayiotis Tsaparas, Leonardo Marino-Ramirez, Olivier Bodenreider, Eugene V Koonin, King I Jordan
    posted to coexpression networks by dionjw on 2006-11-03 13:58:36 as **
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