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Group: csb_journal_club_public - library [32 articles]

小组成员近期录入的文献 csb_journal_club_public 兴趣小组
  • MeTis: Unstrctured Graph Partitioning and Sparse Matrix Ordering System, Version 2.0
    (1995)
    by George Karypis, Vipin Kumar
    posted to active_network graph_partition by dragonrez to the group csb_journal_club_public on 2007-11-27 20:37:18 as ** along with 1 person mpotamias
  • OSCAR: One-class SVM for Accurate Recognition of Cis-elements
    Bioinformatics (5 October 2007), btm473.
    by Bo Jiang, Michael Q Zhang, Xuegong Zhang
    posted to learning_one_class promotors by tmmurali to the group csb_journal_club_public on 2007-11-17 18:22:45 as ** along with 6 people cassj chad_davis cabbagezs maximilianh idonaldson isimpson
  • PharmGKB: the Pharmacogenetics Knowledge Base.
    Nucleic Acids Res, Vol. 30, No. 1. (1 January 2002), pp. 163-165.
    by M Hewett, DE Oliver, DL Rubin, KL Easton, JM Stuart, RB Altman, TE Klein
    posted to docking drug_target by dragonrez to the group csb_journal_club_public on 2007-11-14 18:45:28 as **
  • PharmGKB: the pharmacogenetics and pharmacogenomics knowledge base
    Pharmacogenomics J, Vol. 4, No. 1. (0000), pp. 1-1.
    by TE Klein, RB Altman
    posted to database docking drug_target by guos to the group csb_journal_club_public on 2007-11-14 18:43:24 as **
  • Exact p-value calculation for heterotypic clusters of regulatory motifs and its application in computational annotation of cis-regulatory modules
    Algorithms for Molecular Biology, Vol. 2 (10 October 2007), 13.
    by Valentina Boeva, Julien Clement, Mireille Regnier, Mikhail A Roytberg, Vsevolod J Makeev
    posted to clustering regulatory_motifs by guos to the group csb_journal_club_public on 2007-11-13 20:38:34 as ** along with 2 people idonaldson isimpson
  • Distribution of node characteristics in complex networks
    Proceedings of the National Academy of Sciences (7 November 2007), 0705081104.
    by Juyong Park, Albert-Laszlo Barabasi
    posted to network_modules network_structure by tmmurali to the group csb_journal_club_public on 2007-11-13 20:03:06 as ***** along with 6 people cjeans bootsy roys nolodie JozefK Torsten_Holmer
  • Discrimination of Direct and Indirect Interactions in a Network of Regulatory Effects
    Journal of Computational Biology, Vol. 14, No. 9. (November 2007), pp. 1217-1228.
    by A Tresch, T Beissbarth, H Sultmann, R Kuner, A Poustka, A Buness
    posted to network_module by jiny to the group csb_journal_club_public on 2007-11-13 15:02:49 as read
  • Maximizing the sum of the squares of the degrees of a graph
    Discrete Mathematics, Vol. 285, No. 1-3. (6 August 2004), pp. 57-66.
    by Kinkar C Das
    posted to graph_theory by tmmurali to the group csb_journal_club_public on 2007-11-13 14:34:29 as read
  • Learning the parts of objects by non-negative matrix factorization
    Nature, Vol. 401, No. 6755. (21 October 1999), pp. 788-791.
    by Daniel D Lee, Sebastian H Seung
    posted to nmf by dragonrez to the group csb_journal_club_public on 2007-11-09 23:10:24 as ** along with 5 people bcao giorgos phlow noa kenji4569
  • When does non-negative matrix factorization give a correct decomposition into parts
    (2003)
    by D Donoho, V Stodden
    posted to nmf by dragonrez to the group csb_journal_club_public on 2007-11-09 23:04:58 as ** along with 1 person aviad_work
  • Algorithms for Non-negative Matrix Factorization
    (2000), pp. 556-562.
    by Daniel D Lee, Sebastian H Seung
    posted to nmf by vsree007 to the group csb_journal_club_public on 2007-11-09 20:56:43 as ** along with 13 people and 2 groups ppeeling anar yas luispedro pliz walkking aviad_work atbrew sugarexpletive phlow dragonrez vlachmore cager T_lab Computer_Graphics
  • EVOLUTIONARY GENOMICS: Fruit Fly Blitz Shows the Power of Comparative Genomics
    Science, Vol. 318, No. 5852. (9 November 2007), 903.
    by Elizabeth Pennisi
    posted to evolutionary_genomics by tmmurali to the group csb_journal_club_public on 2007-11-09 15:47:45 as ***** along with 2 people cjeans wenhan
  • Information flow in interaction networks.
    J Comput Biol, Vol. 14, No. 8. (October 2007), pp. 1115-1143.
    by A Stojmirović, YK Yu
    posted to ppi_network by tmmurali to the group csb_journal_club_public on 2007-11-08 19:10:27 as ***** along with 1 person jyuh
  • The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration
    Nat Biotech, Vol. 25, No. 11. (November 2007), pp. 1251-1255.
    by Barry Smith, Michael Ashburner, Cornelius Rosse, Jonathan Bard, William Bug, Werner Ceusters, Louis J Goldberg, Karen Eilbeck, Amelia Ireland, Christopher J Mungall, Neocles Leontis, Philippe Rocca-Serra, Alan Ruttenberg, Susanna-Assunta Sansone, Richard H Scheuermann, Nigam Shah, Patricia L Whetzel, Suzanna Lewis
    posted to ontologies by tmmurali to the group csb_journal_club_public on 2007-11-08 17:07:08 as ***** along with 14 people and 1 group jfr dullhunk jandot cjeans leechuck sgoetz PunkRock sobolevnrm lenov AlexanderPico dansullivanblk dagmar marck fgibson baker-group
  • Executable cell biology
    Nat Biotech, Vol. 25, No. 11. (November 2007), pp. 1239-1249.
    by Jasmin Fisher, Thomas A Henzinger
    posted to systems_biology by tmmurali to the group csb_journal_club_public on 2007-11-08 17:06:51 as ***** along with 10 people and 1 group austin julius dbikard neils cjeans hpaces mircea tlandrain Doug jyuh Centre de Recherches Interdisciplinaires
  • Evolutionary genomics: Come fly with us
    Nature, Vol. 450, No. 7167. (07 November 2007), pp. 184-185.
    by Ewan Birney
    posted to comparative_genomics by tmmurali to the group csb_journal_club_public on 2007-11-07 22:53:42 as ***** along with 1 person dullhunk
  • Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures
    Nature, Vol. 450, No. 7167., pp. 219-232.
    by Alexander Stark, Michael F Lin, Pouya Kheradpour, Jakob S Pedersen, Leopold Parts, Joseph W Carlson, Madeline A Crosby, Matthew D Rasmussen, Sushmita Roy, Ameya N Deoras, Graham J Ruby, Julius Brennecke, Harvard F Curators, Berkeley, Emily Hodges, Angie S Hinrichs, Anat Caspi, Benedict Paten, Seung-Won Park, Mira V Han, Morgan L Maeder, Benjamin J Polansky, Bryanne E Robson, Stein Aerts, Jacques van Helden, Bassem Hassan, Donald G Gilbert, Deborah A Eastman, Michael Rice, Michael Weir, Matthew W Hahn, Yongkyu Park, Colin N Dewey, Lior Pachter, James W Kent, David Haussler, Eric C Lai, David P Bartel, Gregory J Hannon, Thomas C Kaufman, Michael B Eisen, Andrew G Clark, Douglas Smith, Susan E Celniker, William M Gelbart, Manolis Kellis
    posted to comparative_genomics by tmmurali to the group csb_journal_club_public on 2007-11-07 22:30:04 as ***** along with 14 people and 2 groups operon djkt timflutre stajich lp2 cabbagezs nklee hpaces roys caseybrown gjuggler shuzhens PetrovLab cisevol Berkeley Mycology Drosophila-Genetics-Genomics-2008
  • Evolution of genes and genomes on the Drosophila phylogeny
    Nature, Vol. 450, No. 7167. (November 2007), pp. 203-218.
    posted to evolutionary_genomics_drosophila by tmmurali to the group csb_journal_club_public on 2007-11-07 19:26:10 as **** along with 19 people and 5 groups operon indigoviolet djkt timflutre stajich zwang Garamonfok lp2 CharlesM hpaces caseybrown emptyhb urgi noor PetrovLab isimpson balicea cisevol hdopazo Bioinformatics EisenLab Berkeley Mycology BergmanLab Drosophila-Genetics-Genomics-2008
  • Semantic integration to identify overlapping functional modules in protein interaction networks
    BMC Bioinformatics, Vol. 8 (24 July 2007), 265.
    by Young-Rae Cho, Woochang Hwang, Murali Ramanathan, Aidong Zhang
    posted to network_modules by tmmurali to the group csb_journal_club_public on 2007-11-07 14:43:05 as ** along with 4 people and 1 group jyuh grahamc carlk AbnerCYH ParkinsonLab_at_MaRS
  • Genomic analysis of human microRNA transcripts.
    Proc Natl Acad Sci U S A (26 October 2007)
    by Harpreet Kaur K Saini, Sam Griffiths-Jones, Anton James J Enright
    posted to microrna by tmmurali to the group csb_journal_club_public on 2007-11-06 19:39:08 as ** along with 13 people jfr jyuh dchughes AbnerCYH ealloza bootsy lp2 cabbagezs maximilianh RedmondSmyth gracio maralena tolot27
  • Proteins, drug targets and the mechanisms they control: the simple truth about complex networks.
    Nat Rev Drug Discov (12 October 2007)
    by Robyn P P Araujo, Lance A A Liotta, Emanuel F F Petricoin
    posted to drug_discovery networks by dragonrez to the group csb_journal_club_public on 2007-11-02 18:45:35 as ** along with 7 people Yanno jyuh bicko cjeans Babysitter mingzhi stefanoallesina
  • Hostâmicrobe interactions
    Nature, Vol. 449, No. 7164. (17 October 2007), pp. 803-803.
    by Claudia Lupp
    posted to host-pathogen by tmmurali to the group csb_journal_club_public on 2007-10-31 21:03:32 as **
  • A gene harvest revealing the archeology and complexity of human disease
    Nature Genetics, Vol. 39, No. 11., pp. 1299-1301.
    by Enrico Petretto, Edison T Liu, Timothy J Aitman
    posted to genome_wide_association_studies by tmmurali to the group csb_journal_club_public on 2007-10-31 19:22:38 as ***** along with 2 people brant cjeans
  • AILUN: reannotating gene expression data automatically
    Nat Meth, Vol. 4, No. 11. (November 2007), pp. 879-879.
    by Rong Chen, Li Li, Atul J Butte
    posted to id_mapping by tmmurali to the group csb_journal_club_public on 2007-10-31 18:40:49 as ** along with 3 people jfr incovoma jyuh
  • Identifying dynamical modules from genetic regulatory systems: applications to the segment polarity network
    BMC Bioinformatics, Vol. 8 (25 October 2007), 413.
    by David J Irons, Nicholas AM Monk
    posted to no-tag by tmmurali to the group csb_journal_club_public on 2007-10-31 16:48:41 as ** along with 1 person Retchless
  • InPrePPI: an integrated evaluation method based on genomic context for predicting protein-protein interactions in prokaryotic genomes
    BMC Bioinformatics, Vol. 8 (26 October 2007), 414.
    by Jingchun Sun, Yan Sun, Guohui Ding, Qi Liu, Chuan Wang, Youyu He, Tieliu Shi, Yixue Li, Zhongming Zhao
    posted to fln_cross_species by tmmurali to the group csb_journal_club_public on 2007-10-31 16:46:57 as ** along with 2 people iris_2001 zwang
  • Pimp my cell
    Mol Syst Biol, Vol. 3 (26 June 2007)
    by Philippe Bastiaens
    posted to synthetic_biology by ironcamel to the group csb_journal_club_public on 2007-10-28 02:40:40 as **** along with 1 person grahamc
  • Maximum Likelihood from Incomplete Data via the EM Algorithm
    by AP Dempster, NM Laird, DB Rubin
    posted to em by dragonrez to the group csb_journal_club_public on 2007-10-22 03:08:19 as ** along with 43 people and 7 groups jake ingo anoopsarkar gangli rpadams wkw hoangmtbk Freyr lukec dheena songhaoyuan amirsaemi j3xucite ecome walkking nandan marrtin tvdbulck MichaelDonoser MikeDoni rwilliamson calamar qq987 ichbins81 petrposik ggorjan shiquanwang lcigler ciga kvorg ifejobi DavidSchulz ykuoka singhsh trop_wizz eddymier schulz stkhu eegilbert weymouth wenhan qwermish iansimon Statistics_and_Social_Science tulip LTN Computer_Graphics Computational_Information_Geometry Medical Image Analysis and Visualization @ OSU MBLAB
  • Logistic Regression, AdaBoost and Bregman Distances
    (2000), pp. 158-169.
    by Michael Collins, Robert E Schapire, Yoram Singer
    posted to bregman_distance nmf by dragonrez to the group csb_journal_club_public on 2007-10-18 19:44:21 as ** along with 2 people and 1 group bpacker Daniel24 vision-ng
  • When does non-negative matrix factorization give a correct decomposition into parts
    (2003)
    by D Donoho, V Stodden
    posted to nmf by dragonrez to the group csb_journal_club_public on 2007-10-18 17:40:12 as ** along with 1 person kenji4569
  • Positive matrix factorization: A non-negative factor model with optimal utilization of error estimates of data values
    Environmetrics, Vol. 5, No. 2. (1994), pp. 111-126.
    by Pentti Paatero, Unto Tapper
    posted to nmf by dragonrez to the group csb_journal_club_public on 2007-10-17 23:50:17 as ** along with 3 people tmmurali phlow pliz
  • A Novel Kernel Method for Clustering
    Pattern Analysis and Machine Intelligence, IEEE Transactions on, Vol. 27, No. 5. (2005), pp. 801-804.
    by F Camastra, A Verri
    posted to clustering kernel by dragonrez to the group csb_journal_club_public on 2007-10-17 20:30:50 as ** along with 6 people and 1 group davidr eme filippone sdvillal seudonimo_falso vplagnol astro
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